Wall clock time and date at job start Tue Mar 31 2020 19:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00209 * 2 1 4 4 C 1.53000 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47042 * 180.02562 * 4 3 2 6 6 C 1.35847 * 126.05610 * 125.28679 * 5 4 3 7 7 C 1.35729 * 107.55845 * 180.15957 * 6 5 4 8 8 N 1.40849 * 126.07131 * 179.84375 * 7 6 5 9 9 C 1.34784 * 119.99774 * 179.71686 * 8 7 6 10 10 O 1.21598 * 120.00096 * 5.19591 * 9 8 7 11 11 N 1.34781 * 119.99820 * 184.92349 * 9 8 7 12 12 C 1.46926 * 120.62932 * 354.95602 * 11 9 8 13 13 C 1.53624 * 108.53994 * 126.36936 * 12 11 9 14 14 C 1.53039 * 109.24334 * 54.85371 * 13 12 11 15 15 C 1.53002 * 109.46109 * 178.48883 * 14 13 12 16 16 C 1.50697 * 109.46889 * 295.07035 * 15 14 13 17 17 H 1.07999 * 120.00796 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99715 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47139 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46966 * 120.00299 * 20 18 16 23 23 H 1.48497 * 109.47187 * 239.99671 * 20 18 16 24 24 C 1.53037 * 109.53946 * 298.51340 * 14 13 12 25 25 C 1.46925 * 120.62842 * 175.23542 * 11 9 8 26 26 C 1.40230 * 107.85345 * 359.57696 * 7 6 5 27 27 N 1.30844 * 108.34173 * 0.26486 * 26 7 6 28 28 H 1.08993 * 109.47357 * 300.00069 * 1 2 3 29 29 H 1.09003 * 109.46707 * 60.00002 * 1 2 3 30 30 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47001 * 59.99943 * 3 2 1 32 32 H 1.08994 * 109.47080 * 300.00049 * 3 2 1 33 33 H 1.09003 * 109.46969 * 60.00158 * 4 3 2 34 34 H 1.08997 * 109.47024 * 300.00598 * 4 3 2 35 35 H 1.07994 * 126.22279 * 0.03516 * 6 5 4 36 36 H 0.96995 * 120.00488 * 359.70577 * 8 7 6 37 37 H 1.08997 * 109.58326 * 246.19899 * 12 11 9 38 38 H 1.08996 * 109.58657 * 6.62744 * 12 11 9 39 39 H 1.09001 * 109.63478 * 294.86379 * 13 12 11 40 40 H 1.09003 * 109.45880 * 174.73845 * 13 12 11 41 41 H 1.09005 * 109.44715 * 58.52517 * 14 13 12 42 42 H 1.08997 * 109.46837 * 55.06976 * 15 14 13 43 43 H 1.09001 * 109.47001 * 175.07325 * 15 14 13 44 44 H 0.97003 * 119.99630 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.49578 * 301.40856 * 24 14 13 46 46 H 1.09004 * 109.52492 * 181.33044 * 24 14 13 47 47 H 1.08996 * 109.58626 * 353.37771 * 25 11 9 48 48 H 1.09000 * 109.58389 * 113.65215 * 25 11 9 49 49 H 1.07999 * 125.83401 * 180.28373 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0357 2.9951 0.8982 7 6 5.3295 4.2734 0.5493 8 7 6.2236 5.1313 1.2189 9 6 6.4285 6.3821 0.7605 10 8 5.7728 6.8023 -0.1734 11 7 7.3564 7.1689 1.3406 12 6 8.0744 6.7193 2.5410 13 6 9.5838 6.8324 2.2784 14 6 9.9149 8.2630 1.8471 15 6 11.4227 8.3910 1.6206 16 6 12.1458 8.1892 2.9272 17 1 11.5862 7.9901 3.8291 18 6 13.5222 8.2589 2.9713 19 7 14.2038 8.5010 1.8729 20 14 14.4186 8.0095 4.5910 21 1 13.4303 7.7532 5.6694 22 1 15.3365 6.8479 4.4750 23 1 15.2018 9.2286 4.9162 24 6 9.1745 8.5904 0.5485 25 6 7.6646 8.4950 0.7882 26 6 4.5893 4.5863 -0.5999 27 7 3.8741 3.5404 -0.9264 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8575 0.6435 -0.8892 34 1 3.8567 0.6438 0.8908 35 1 5.4449 2.4527 1.7377 36 1 6.6919 4.8220 2.0101 37 1 7.8000 7.3482 3.3879 38 1 7.8159 5.6822 2.7544 39 1 9.8711 6.1386 1.4883 40 1 10.1301 6.5917 3.1904 41 1 9.6046 8.9582 2.6273 42 1 11.7479 7.6360 0.9049 43 1 11.6484 9.3832 1.2298 44 1 15.1722 8.5496 1.9039 45 1 9.4657 7.8801 -0.2253 46 1 9.4290 9.6011 0.2289 47 1 7.1355 8.6298 -0.1552 48 1 7.3550 9.2658 1.4939 49 1 4.6067 5.5294 -1.1259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520806327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:44 Heat of formation + Delta-G solvation = 6.533349 kcal Electronic energy + Delta-G solvation = -28468.100933 eV Core-core repulsion = 24432.337690 eV Total energy + Delta-G solvation = -4035.763243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52124 -40.15585 -38.44190 -37.54783 -35.03147 -34.15109 -33.47875 -32.09976 -30.77914 -30.12848 -28.71246 -27.77719 -26.54985 -24.66040 -23.79772 -22.99050 -22.37307 -21.38972 -21.03965 -19.87322 -19.03797 -17.99993 -17.63779 -16.78740 -16.73237 -16.31622 -15.84487 -15.79970 -15.48865 -14.91871 -14.71705 -14.55313 -14.32505 -13.92838 -13.74517 -13.71282 -13.25711 -13.14958 -12.91885 -12.83396 -12.50330 -12.28235 -12.10435 -11.85848 -11.82494 -11.23014 -11.00903 -10.92456 -10.86145 -10.83646 -10.71713 -10.49289 -10.22684 -10.13823 -9.96578 -9.67564 -9.56213 -9.31396 -8.99127 -8.47052 -8.38348 -7.74155 -6.02846 -4.05041 1.59671 1.99330 2.59560 2.68569 3.27435 3.33274 3.35704 3.37872 3.41191 3.84129 4.25450 4.42273 4.44750 4.59848 4.75527 4.83472 4.84934 4.92690 5.01572 5.14205 5.16958 5.22023 5.26439 5.31511 5.40767 5.45746 5.50791 5.55103 5.63123 5.70824 5.96627 6.04184 6.13075 6.32060 6.35859 6.45891 6.49919 6.60472 6.71396 6.84449 6.92526 6.96242 6.98106 7.07779 7.53041 7.64414 7.78659 7.90305 7.97004 8.38924 8.56305 9.01817 9.58982 11.08342 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.001856 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.887820 B =15085.606390 C =15910.038349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.147 3.853 5 N -0.376 5.376 6 C 0.009 3.991 7 C 0.033 3.967 8 N -0.663 5.663 9 C 0.712 3.288 10 O -0.587 6.587 11 N -0.618 5.618 12 C 0.108 3.892 13 C -0.119 4.119 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.131 4.131 25 C 0.130 3.870 26 C 0.057 3.943 27 N -0.288 5.288 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.406 0.594 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.667 -13.800 -0.352 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.025 3.975 5 N -0.164 5.164 6 C -0.137 4.137 7 C -0.072 4.072 8 N -0.313 5.313 9 C 0.414 3.586 10 O -0.465 6.465 11 N -0.354 5.354 12 C -0.015 4.015 13 C -0.157 4.157 14 C -0.099 4.099 15 C -0.010 4.010 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.169 4.169 25 C 0.008 3.992 26 C -0.130 4.130 27 N -0.109 5.109 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.194 0.806 36 H 0.244 0.756 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -24.704 -14.207 -1.887 28.560 hybrid contribution 1.455 0.218 2.030 2.507 sum -23.249 -13.989 0.144 27.134 Atomic orbital electron populations 1.22774 0.80042 1.03042 1.00383 1.87774 1.20510 1.27120 1.95612 1.22698 0.92889 0.85145 1.02029 1.21265 0.92188 0.78938 1.05090 1.48060 1.34603 1.11779 1.21929 1.21772 0.98664 0.94631 0.98662 1.17502 1.00643 0.90679 0.98402 1.42099 1.45645 1.11923 1.31606 1.15662 0.80744 0.80028 0.82206 1.90761 1.50614 1.73667 1.31461 1.47334 1.39622 1.18344 1.30094 1.21943 0.94270 0.98501 0.86800 1.21985 0.91945 0.98820 1.02923 1.21179 0.98980 0.94803 0.94905 1.19133 0.87750 0.97183 0.96966 1.21272 0.91325 1.48258 0.94633 0.92551 1.25029 0.97887 0.95459 0.96106 1.69975 1.06836 1.49615 1.26940 0.86596 0.79855 0.77730 0.84146 1.19785 1.21129 1.21093 1.22055 0.93152 1.02098 0.99586 1.21590 0.96769 0.81425 0.99415 1.24569 0.94295 0.98687 0.95497 1.77363 1.23967 0.96279 1.13310 0.93849 0.93706 0.89223 0.92683 0.91534 0.88921 0.87825 0.80634 0.75599 0.91185 0.91605 0.92180 0.89704 0.92291 0.96628 0.96534 0.93093 0.92025 0.90977 0.89426 0.91847 0.77537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.06 10.70 -35.23 -0.38 -3.43 16 3 C 0.05 0.38 6.13 37.16 0.23 0.60 16 4 C 0.15 1.06 6.89 -4.04 -0.03 1.03 16 5 N -0.38 -3.84 3.70 -61.03 -0.23 -4.06 16 6 C 0.01 0.09 11.52 -16.67 -0.19 -0.10 16 7 C 0.03 0.40 6.90 -83.86 -0.58 -0.17 16 8 N -0.66 -7.87 5.39 -14.39 -0.08 -7.95 16 9 C 0.71 10.47 8.27 -86.91 -0.72 9.75 16 10 O -0.59 -10.11 12.96 5.28 0.07 -10.04 16 11 N -0.62 -8.62 2.97 -178.24 -0.53 -9.15 16 12 C 0.11 1.34 6.46 -3.49 -0.02 1.32 16 13 C -0.12 -1.91 5.21 -26.39 -0.14 -2.05 16 14 C -0.08 -1.48 2.10 -90.58 -0.19 -1.67 16 15 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 16 C -0.52 -13.65 8.39 -34.44 -0.29 -13.94 16 17 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 20 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.13 -2.11 5.36 -26.62 -0.14 -2.25 16 25 C 0.13 1.87 6.42 -3.71 -0.02 1.84 16 26 C 0.06 0.79 10.84 -17.22 -0.19 0.61 16 27 N -0.29 -3.76 12.41 30.70 0.38 -3.38 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.41 3.72 6.28 -40.82 -0.26 3.47 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.63 5.56 -51.93 -0.29 0.34 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.45 6.91 -51.93 -0.36 1.09 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.09 1.29 7.03 -51.93 -0.37 0.93 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.21 3.10 5.93 -52.49 -0.31 2.79 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -33.04 394.86 -8.33 -41.37 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.85 Total: 2.05 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.39 Total: -1.76 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.29 Total: -49.99 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.31 Total: -13.47 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.04 -8.33 -41.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520806327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.906 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds