Wall clock time and date at job start Tue Mar 31 2020 19:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00209 * 2 1 4 4 C 1.53000 * 109.47261 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47042 * 180.02562 * 4 3 2 6 6 C 1.35847 * 126.05610 * 125.28679 * 5 4 3 7 7 C 1.35729 * 107.55845 * 180.15957 * 6 5 4 8 8 N 1.40849 * 126.07131 * 179.84375 * 7 6 5 9 9 C 1.34784 * 119.99774 * 179.71686 * 8 7 6 10 10 O 1.21598 * 120.00096 * 5.19591 * 9 8 7 11 11 N 1.34781 * 119.99820 * 184.92349 * 9 8 7 12 12 C 1.46926 * 120.62932 * 354.95602 * 11 9 8 13 13 C 1.53624 * 108.53994 * 126.36936 * 12 11 9 14 14 C 1.53039 * 109.24334 * 54.85371 * 13 12 11 15 15 C 1.53002 * 109.46109 * 178.48883 * 14 13 12 16 16 C 1.50697 * 109.46889 * 295.07035 * 15 14 13 17 17 H 1.07999 * 120.00796 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99715 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99891 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47139 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46966 * 120.00299 * 20 18 16 23 23 H 1.48497 * 109.47187 * 239.99671 * 20 18 16 24 24 C 1.53037 * 109.53946 * 298.51340 * 14 13 12 25 25 C 1.46925 * 120.62842 * 175.23542 * 11 9 8 26 26 C 1.40230 * 107.85345 * 359.57696 * 7 6 5 27 27 N 1.30844 * 108.34173 * 0.26486 * 26 7 6 28 28 H 1.08993 * 109.47357 * 300.00069 * 1 2 3 29 29 H 1.09003 * 109.46707 * 60.00002 * 1 2 3 30 30 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47001 * 59.99943 * 3 2 1 32 32 H 1.08994 * 109.47080 * 300.00049 * 3 2 1 33 33 H 1.09003 * 109.46969 * 60.00158 * 4 3 2 34 34 H 1.08997 * 109.47024 * 300.00598 * 4 3 2 35 35 H 1.07994 * 126.22279 * 0.03516 * 6 5 4 36 36 H 0.96995 * 120.00488 * 359.70577 * 8 7 6 37 37 H 1.08997 * 109.58326 * 246.19899 * 12 11 9 38 38 H 1.08996 * 109.58657 * 6.62744 * 12 11 9 39 39 H 1.09001 * 109.63478 * 294.86379 * 13 12 11 40 40 H 1.09003 * 109.45880 * 174.73845 * 13 12 11 41 41 H 1.09005 * 109.44715 * 58.52517 * 14 13 12 42 42 H 1.08997 * 109.46837 * 55.06976 * 15 14 13 43 43 H 1.09001 * 109.47001 * 175.07325 * 15 14 13 44 44 H 0.97003 * 119.99630 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.49578 * 301.40856 * 24 14 13 46 46 H 1.09004 * 109.52492 * 181.33044 * 24 14 13 47 47 H 1.08996 * 109.58626 * 353.37771 * 25 11 9 48 48 H 1.09000 * 109.58389 * 113.65215 * 25 11 9 49 49 H 1.07999 * 125.83401 * 180.28373 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0357 2.9951 0.8982 7 6 5.3295 4.2734 0.5493 8 7 6.2236 5.1313 1.2189 9 6 6.4285 6.3821 0.7605 10 8 5.7728 6.8023 -0.1734 11 7 7.3564 7.1689 1.3406 12 6 8.0744 6.7193 2.5410 13 6 9.5838 6.8324 2.2784 14 6 9.9149 8.2630 1.8471 15 6 11.4227 8.3910 1.6206 16 6 12.1458 8.1892 2.9272 17 1 11.5862 7.9901 3.8291 18 6 13.5222 8.2589 2.9713 19 7 14.2038 8.5010 1.8729 20 14 14.4186 8.0095 4.5910 21 1 13.4303 7.7532 5.6694 22 1 15.3365 6.8479 4.4750 23 1 15.2018 9.2286 4.9162 24 6 9.1745 8.5904 0.5485 25 6 7.6646 8.4950 0.7882 26 6 4.5893 4.5863 -0.5999 27 7 3.8741 3.5404 -0.9264 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8575 0.6435 -0.8892 34 1 3.8567 0.6438 0.8908 35 1 5.4449 2.4527 1.7377 36 1 6.6919 4.8220 2.0101 37 1 7.8000 7.3482 3.3879 38 1 7.8159 5.6822 2.7544 39 1 9.8711 6.1386 1.4883 40 1 10.1301 6.5917 3.1904 41 1 9.6046 8.9582 2.6273 42 1 11.7479 7.6360 0.9049 43 1 11.6484 9.3832 1.2298 44 1 15.1722 8.5496 1.9039 45 1 9.4657 7.8801 -0.2253 46 1 9.4290 9.6011 0.2289 47 1 7.1355 8.6298 -0.1552 48 1 7.3550 9.2658 1.4939 49 1 4.6067 5.5294 -1.1259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520806327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:43 Heat of formation + Delta-G solvation = -14.931812 kcal Electronic energy + Delta-G solvation = -28469.031732 eV Core-core repulsion = 24432.337690 eV Total energy + Delta-G solvation = -4036.694042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41184 -41.22617 -39.03822 -38.77786 -36.00883 -35.69186 -34.44488 -33.77532 -31.96955 -30.93418 -29.96605 -28.99799 -27.11537 -26.25164 -24.48881 -24.20318 -23.82076 -22.28842 -22.13818 -21.12280 -20.19672 -19.05190 -18.44327 -18.37171 -17.51970 -17.32268 -16.70121 -16.67513 -16.49585 -16.31411 -15.85815 -15.50845 -15.32150 -15.17695 -14.89020 -14.62749 -14.48879 -14.33299 -14.22986 -13.85678 -13.76441 -13.36685 -13.06401 -12.96766 -12.71070 -12.66610 -12.50083 -12.33242 -12.27838 -12.11522 -11.78856 -11.74718 -11.67952 -11.34709 -11.16607 -10.93456 -10.80072 -10.76387 -10.50103 -10.40655 -9.65164 -8.63436 -8.13538 -6.22944 0.78895 1.24082 1.43213 1.44420 1.56313 1.58934 1.70932 2.36889 2.45217 2.78468 2.89044 3.20655 3.68511 3.89616 3.91040 3.95117 4.05978 4.10010 4.11987 4.23889 4.25146 4.39248 4.45168 4.46674 4.51930 4.55751 4.57499 4.67913 4.72241 4.80484 4.82952 4.85895 4.93927 5.01041 5.13480 5.18387 5.35601 5.36665 5.43634 5.59054 5.63418 5.77666 5.85897 5.92984 5.95555 5.99574 6.10404 6.32271 6.63273 6.92429 6.94844 7.46034 7.50738 8.98574 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.001856 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.887820 B =15085.606390 C =15910.038349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.142 3.858 5 N -0.371 5.371 6 C 0.040 3.960 7 C 0.002 3.998 8 N -0.648 5.648 9 C 0.705 3.295 10 O -0.618 6.618 11 N -0.620 5.620 12 C 0.116 3.884 13 C -0.113 4.113 14 C -0.073 4.073 15 C 0.031 3.969 16 C -0.523 4.523 17 H 0.070 0.930 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.960 3.040 21 H -0.255 1.255 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.122 4.122 25 C 0.138 3.862 26 C 0.036 3.964 27 N -0.314 5.314 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.224 0.776 36 H 0.420 0.580 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.065 0.935 42 H -0.017 1.017 43 H -0.015 1.015 44 H 0.259 0.741 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.965 -15.963 2.628 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.022 4.022 4 C 0.021 3.979 5 N -0.157 5.157 6 C -0.108 4.108 7 C -0.103 4.103 8 N -0.299 5.299 9 C 0.407 3.593 10 O -0.499 6.499 11 N -0.355 5.355 12 C -0.006 4.006 13 C -0.151 4.151 14 C -0.092 4.092 15 C -0.006 4.006 16 C -0.561 4.561 17 H 0.088 0.912 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.786 3.214 21 H -0.178 1.178 22 H -0.210 1.210 23 H -0.212 1.212 24 C -0.161 4.161 25 C 0.015 3.985 26 C -0.151 4.151 27 N -0.137 5.137 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.240 0.760 36 H 0.261 0.739 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -26.031 -16.404 1.114 30.789 hybrid contribution 1.809 0.804 1.035 2.234 sum -24.222 -15.600 2.149 28.891 Atomic orbital electron populations 1.22962 0.78861 1.04251 1.00831 1.87748 1.21868 1.27041 1.95656 1.22579 0.93217 0.85094 1.01304 1.21560 0.91872 0.77567 1.06874 1.48380 1.34176 1.12043 1.21110 1.22453 0.96472 0.93464 0.98397 1.17672 1.01846 0.91988 0.98798 1.41839 1.45445 1.10823 1.31801 1.15832 0.80703 0.80793 0.81941 1.90758 1.51796 1.74483 1.32834 1.47341 1.39638 1.18076 1.30494 1.21973 0.90952 1.01175 0.86500 1.21861 0.94995 0.96402 1.01872 1.21031 0.94958 0.96962 0.96201 1.19040 0.91974 0.94181 0.95442 1.21720 0.91738 1.47012 0.95667 0.91178 1.25981 0.99129 0.95365 0.99723 1.70130 1.07065 1.51264 1.29511 0.85465 0.78620 0.77359 0.79990 1.17826 1.20999 1.21151 1.21931 0.94659 1.01575 0.97912 1.21456 0.94617 0.82485 0.99903 1.24345 0.95653 0.98445 0.96660 1.77313 1.24661 0.97006 1.14750 0.93075 0.93620 0.87697 0.92495 0.93248 0.88705 0.84462 0.75971 0.73893 0.89310 0.88092 0.93668 0.90376 0.91657 0.99847 0.99699 0.93178 0.93746 0.91014 0.90026 0.89983 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.58 10.70 -148.98 -1.59 -7.18 16 3 C 0.06 0.75 6.13 71.98 0.44 1.19 16 4 C 0.14 1.66 6.89 86.38 0.59 2.26 16 5 N -0.37 -6.71 3.70 -346.99 -1.29 -8.00 16 6 C 0.04 0.62 11.52 83.49 0.96 1.58 16 7 C 0.00 0.04 6.90 37.59 0.26 0.30 16 8 N -0.65 -13.94 5.39 -317.70 -1.71 -15.65 16 9 C 0.71 19.98 8.27 179.05 1.48 21.46 16 10 O -0.62 -21.57 12.96 -4.02 -0.05 -21.62 16 11 N -0.62 -16.25 2.97 -836.07 -2.48 -18.73 16 12 C 0.12 2.53 6.46 86.51 0.56 3.09 16 13 C -0.11 -3.49 5.21 30.82 0.16 -3.33 16 14 C -0.07 -2.68 2.10 -10.77 -0.02 -2.71 16 15 C 0.03 1.54 4.45 29.85 0.13 1.67 16 16 C -0.52 -27.79 8.39 25.60 0.21 -27.57 16 17 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 18 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.94 -56.47 13.29 21.45 0.28 -56.19 16 20 Si 0.96 42.65 29.54 68.60 2.03 44.67 16 21 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 24 C -0.12 -4.01 5.36 30.67 0.16 -3.85 16 25 C 0.14 3.84 6.42 86.36 0.55 4.39 16 26 C 0.04 1.00 10.84 85.32 0.92 1.92 16 27 N -0.31 -8.16 12.41 -56.78 -0.70 -8.86 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 0.73 8.07 -2.39 -0.02 0.71 16 35 H 0.22 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.42 6.13 6.28 -92.71 -0.58 5.54 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.50 5.56 -2.39 -0.01 1.49 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.53 6.91 -2.39 -0.02 2.51 16 41 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 44 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 47 H 0.08 2.41 7.03 -2.39 -0.02 2.39 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.19 5.93 5.93 -2.91 -0.02 5.91 16 Total: -1.00 -75.29 394.86 2.99 -72.31 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.37 Total: 17.16 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 8.13 Total: 2.09 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -5.90 Total: -107.43 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.65 Total: -28.80 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -75.29 2.99 -72.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520806327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.375 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds