Wall clock time and date at job start Tue Mar 31 2020 19:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99911 * 2 1 4 4 C 1.53002 * 109.47342 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.34960 * 125.97224 * 124.99890 * 5 4 3 7 7 C 1.35249 * 107.85851 * 179.97438 * 6 5 4 8 8 C 1.40400 * 107.86564 * 0.02562 * 7 6 5 9 9 N 1.40194 * 125.97009 * 179.97438 * 8 7 6 10 10 C 1.34768 * 120.00293 * 359.71804 * 9 8 7 11 11 O 1.21598 * 119.99757 * 355.14504 * 10 9 8 12 12 N 1.34776 * 120.00360 * 175.14363 * 10 9 8 13 13 C 1.46926 * 120.62780 * 4.94907 * 12 10 9 14 14 C 1.53627 * 108.54334 * 126.36794 * 13 12 10 15 15 C 1.53039 * 109.24113 * 54.85618 * 14 13 12 16 16 C 1.53001 * 109.46003 * 178.48795 * 15 14 13 17 17 C 1.50700 * 109.47198 * 295.06865 * 16 15 14 18 18 H 1.07995 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99607 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48511 * 109.46892 * 60.00552 * 21 19 17 23 23 H 1.48499 * 109.47221 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47579 * 300.00901 * 21 19 17 25 25 C 1.53034 * 109.53954 * 298.51423 * 15 14 13 26 26 C 1.46920 * 120.63386 * 185.22914 * 12 10 9 27 27 N 1.31209 * 108.05434 * 0.25597 * 8 7 6 28 28 H 1.08994 * 109.47745 * 300.00044 * 1 2 3 29 29 H 1.08998 * 109.46762 * 60.00410 * 1 2 3 30 30 H 1.09005 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46864 * 59.99794 * 3 2 1 32 32 H 1.08999 * 109.47146 * 299.99756 * 3 2 1 33 33 H 1.08995 * 109.46702 * 60.00250 * 4 3 2 34 34 H 1.08999 * 109.47137 * 300.00173 * 4 3 2 35 35 H 1.07999 * 126.07377 * 359.97438 * 6 5 4 36 36 H 1.07999 * 126.06774 * 179.97438 * 7 6 5 37 37 H 0.96999 * 119.99336 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.58757 * 246.19984 * 13 12 10 39 39 H 1.08999 * 109.59120 * 6.62576 * 13 12 10 40 40 H 1.08998 * 109.63485 * 294.86744 * 14 13 12 41 41 H 1.09004 * 109.45786 * 174.74112 * 14 13 12 42 42 H 1.09005 * 109.44963 * 58.52669 * 15 14 13 43 43 H 1.09003 * 109.46822 * 55.06909 * 16 15 14 44 44 H 1.09004 * 109.46960 * 175.06602 * 16 15 14 45 45 H 0.96999 * 120.00204 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.49393 * 301.41000 * 25 15 14 47 47 H 1.08999 * 109.53048 * 181.33498 * 25 15 14 48 48 H 1.08997 * 109.58985 * 353.37327 * 26 12 10 49 49 H 1.08998 * 109.58880 * 113.65669 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1313 2.5232 0.0000 6 6 5.0256 2.9932 0.8948 7 6 5.3286 4.2652 0.5493 8 6 4.5907 4.5865 -0.6011 9 7 4.6169 5.8126 -1.2804 10 6 5.3988 6.8147 -0.8324 11 8 6.0135 6.6871 0.2090 12 7 5.4995 7.9582 -1.5386 13 6 4.6813 8.1703 -2.7404 14 6 3.9262 9.4996 -2.5890 15 6 4.9294 10.6202 -2.3062 16 6 4.1864 11.9527 -2.1919 17 6 3.5655 12.2974 -3.5211 18 1 3.6889 11.6327 -4.3633 19 6 2.8399 13.4613 -3.6619 20 7 2.6901 14.2709 -2.6365 21 14 2.0709 13.8888 -5.3097 22 1 1.1161 12.8212 -5.7022 23 1 1.3496 15.1821 -5.1987 24 1 3.1358 14.0031 -6.3383 25 6 5.6632 10.3313 -0.9947 26 6 6.4339 9.0138 -1.1248 27 7 3.8679 3.5407 -0.9258 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6438 -0.8891 34 1 3.8568 0.6440 0.8908 35 1 5.4280 2.4501 1.7371 36 1 6.0156 4.9183 1.0670 37 1 4.0693 5.9409 -2.0707 38 1 5.3256 8.2109 -3.6186 39 1 3.9677 7.3531 -2.8456 40 1 3.2193 9.4272 -1.7625 41 1 3.3870 9.7180 -3.5108 42 1 5.6510 10.6756 -3.1214 43 1 3.4050 11.8693 -1.4365 44 1 4.8876 12.7362 -1.9043 45 1 2.1799 15.0900 -2.7356 46 1 4.9399 10.2511 -0.1832 47 1 6.3608 11.1413 -0.7814 48 1 6.8772 8.7533 -0.1637 49 1 7.2196 9.1200 -1.8727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566008026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:48 Heat of formation + Delta-G solvation = 10.773616 kcal Electronic energy + Delta-G solvation = -28561.324801 eV Core-core repulsion = 24525.745430 eV Total energy + Delta-G solvation = -4035.579371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53763 -40.24468 -38.41572 -37.59527 -35.22580 -34.15293 -33.20076 -32.05279 -30.76881 -30.17693 -28.92397 -27.97232 -26.52030 -24.82838 -23.58832 -22.96445 -22.40182 -21.52674 -20.82164 -19.83994 -19.12071 -17.98851 -17.61152 -16.90124 -16.40931 -16.33128 -16.20912 -15.73218 -15.60049 -14.98112 -14.68404 -14.54475 -14.17677 -13.94985 -13.75254 -13.42465 -13.40058 -13.19545 -12.97505 -12.82491 -12.45999 -12.23888 -12.06601 -11.85669 -11.80217 -11.21018 -11.02093 -10.93280 -10.86656 -10.82303 -10.70275 -10.49630 -10.19925 -10.15871 -9.93832 -9.66753 -9.30581 -9.00627 -8.98548 -8.57041 -8.36939 -8.16773 -6.01522 -4.03823 1.65279 1.84275 2.58100 2.63830 3.30517 3.36040 3.36327 3.37271 3.40095 3.77997 4.25088 4.43397 4.47050 4.63191 4.77137 4.86753 4.88350 4.97474 5.03990 5.20086 5.22396 5.24540 5.32538 5.40030 5.41828 5.47385 5.53018 5.63134 5.68856 5.73281 5.95402 6.01723 6.12446 6.31585 6.36381 6.45193 6.53324 6.58103 6.74885 6.83732 6.89381 6.93881 6.96738 7.08185 7.47399 7.64819 7.79458 7.92056 7.97985 8.39871 8.47620 9.02498 9.59979 11.09573 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.002062 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.118281 B =13574.939140 C =15068.577761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.049 3.951 4 C 0.146 3.854 5 N -0.373 5.373 6 C 0.063 3.937 7 C -0.261 4.261 8 C 0.327 3.673 9 N -0.651 5.651 10 C 0.717 3.283 11 O -0.573 6.573 12 N -0.614 5.614 13 C 0.105 3.895 14 C -0.118 4.118 15 C -0.080 4.080 16 C 0.027 3.973 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.130 4.130 26 C 0.130 3.870 27 N -0.331 5.331 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.017 0.983 45 H 0.261 0.739 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -26.508 5.665 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.024 3.976 5 N -0.159 5.159 6 C -0.082 4.082 7 C -0.291 4.291 8 C 0.069 3.931 9 N -0.304 5.304 10 C 0.418 3.582 11 O -0.450 6.450 12 N -0.350 5.350 13 C -0.017 4.017 14 C -0.157 4.157 15 C -0.099 4.099 16 C -0.010 4.010 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.169 4.169 26 C 0.008 3.992 27 N -0.161 5.161 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.194 0.806 36 H 0.192 0.808 37 H 0.250 0.750 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.579 -27.129 5.648 27.756 hybrid contribution -0.614 1.009 -0.836 1.447 sum 0.965 -26.121 4.812 26.578 Atomic orbital electron populations 1.22776 0.80007 1.03021 1.00454 1.87765 1.20546 1.27154 1.95627 1.22709 0.92887 0.85130 1.02097 1.21303 0.92328 0.78978 1.05005 1.47896 1.35217 1.11005 1.21771 1.22612 0.94224 0.95447 0.95914 1.21910 1.09736 0.96741 1.00754 1.18875 0.95355 0.85959 0.92871 1.41911 1.47280 1.09608 1.31608 1.15552 0.79643 0.79820 0.83206 1.90819 1.50277 1.80763 1.23147 1.47357 1.43408 1.15812 1.28473 1.21993 0.93745 0.99137 0.86861 1.21986 0.98150 0.92194 1.03325 1.21187 0.96556 0.97210 0.94951 1.19126 0.94906 0.89913 0.97027 1.21193 1.32276 1.05559 0.96553 0.92655 1.25027 0.96555 0.96524 0.96385 1.69949 1.41113 1.12280 1.30048 0.86705 0.79447 0.77632 0.84466 1.20312 1.21388 1.20297 1.22051 0.99716 0.95362 0.99740 1.21633 0.90504 0.86046 1.01065 1.77305 1.26332 0.96555 1.15908 0.93822 0.93671 0.89237 0.92653 0.91535 0.89030 0.87680 0.80582 0.80767 0.75025 0.90991 0.91518 0.92151 0.89590 0.92236 0.96629 0.96508 0.92979 0.91945 0.90914 0.89284 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.18 10.70 -35.23 -0.38 -3.55 16 3 C 0.05 0.39 6.12 37.16 0.23 0.62 16 4 C 0.15 1.05 6.88 -4.04 -0.03 1.03 16 5 N -0.37 -3.86 3.68 -61.38 -0.23 -4.09 16 6 C 0.06 0.62 11.44 -17.24 -0.20 0.42 16 7 C -0.26 -3.42 9.61 -39.83 -0.38 -3.80 16 8 C 0.33 4.57 8.11 -154.36 -1.25 3.32 16 9 N -0.65 -8.76 5.36 -15.51 -0.08 -8.84 16 10 C 0.72 10.92 8.26 -86.93 -0.72 10.20 16 11 O -0.57 -10.00 12.91 5.28 0.07 -9.93 16 12 N -0.61 -8.76 2.97 -178.24 -0.53 -9.29 16 13 C 0.11 1.37 6.42 -3.48 -0.02 1.35 16 14 C -0.12 -1.96 5.21 -26.39 -0.14 -2.10 16 15 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 16 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 17 C -0.52 -13.78 8.39 -34.44 -0.29 -14.07 16 18 H 0.06 1.41 7.06 -52.49 -0.37 1.04 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.13 -2.12 5.36 -26.61 -0.14 -2.26 16 26 C 0.13 1.85 6.44 -3.71 -0.02 1.83 16 27 N -0.33 -4.35 12.43 31.44 0.39 -3.96 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.18 2.51 5.93 -52.49 -0.31 2.20 16 37 H 0.41 4.72 6.31 -40.82 -0.26 4.46 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.72 5.64 -51.93 -0.29 0.43 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.51 6.91 -51.93 -0.36 1.15 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -33.10 394.68 -9.21 -42.30 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.85 Total: 2.82 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.26 Total: -1.85 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.29 Total: -51.78 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.31 Total: -13.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.10 -9.21 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566008026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.078 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds