Wall clock time and date at job start Tue Mar 31 2020 19:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99911 * 2 1 4 4 C 1.53002 * 109.47342 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.34960 * 125.97224 * 124.99890 * 5 4 3 7 7 C 1.35249 * 107.85851 * 179.97438 * 6 5 4 8 8 C 1.40400 * 107.86564 * 0.02562 * 7 6 5 9 9 N 1.40194 * 125.97009 * 179.97438 * 8 7 6 10 10 C 1.34768 * 120.00293 * 359.71804 * 9 8 7 11 11 O 1.21598 * 119.99757 * 355.14504 * 10 9 8 12 12 N 1.34776 * 120.00360 * 175.14363 * 10 9 8 13 13 C 1.46926 * 120.62780 * 4.94907 * 12 10 9 14 14 C 1.53627 * 108.54334 * 126.36794 * 13 12 10 15 15 C 1.53039 * 109.24113 * 54.85618 * 14 13 12 16 16 C 1.53001 * 109.46003 * 178.48795 * 15 14 13 17 17 C 1.50700 * 109.47198 * 295.06865 * 16 15 14 18 18 H 1.07995 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99607 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00325 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48511 * 109.46892 * 60.00552 * 21 19 17 23 23 H 1.48499 * 109.47221 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47579 * 300.00901 * 21 19 17 25 25 C 1.53034 * 109.53954 * 298.51423 * 15 14 13 26 26 C 1.46920 * 120.63386 * 185.22914 * 12 10 9 27 27 N 1.31209 * 108.05434 * 0.25597 * 8 7 6 28 28 H 1.08994 * 109.47745 * 300.00044 * 1 2 3 29 29 H 1.08998 * 109.46762 * 60.00410 * 1 2 3 30 30 H 1.09005 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46864 * 59.99794 * 3 2 1 32 32 H 1.08999 * 109.47146 * 299.99756 * 3 2 1 33 33 H 1.08995 * 109.46702 * 60.00250 * 4 3 2 34 34 H 1.08999 * 109.47137 * 300.00173 * 4 3 2 35 35 H 1.07999 * 126.07377 * 359.97438 * 6 5 4 36 36 H 1.07999 * 126.06774 * 179.97438 * 7 6 5 37 37 H 0.96999 * 119.99336 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.58757 * 246.19984 * 13 12 10 39 39 H 1.08999 * 109.59120 * 6.62576 * 13 12 10 40 40 H 1.08998 * 109.63485 * 294.86744 * 14 13 12 41 41 H 1.09004 * 109.45786 * 174.74112 * 14 13 12 42 42 H 1.09005 * 109.44963 * 58.52669 * 15 14 13 43 43 H 1.09003 * 109.46822 * 55.06909 * 16 15 14 44 44 H 1.09004 * 109.46960 * 175.06602 * 16 15 14 45 45 H 0.96999 * 120.00204 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.49393 * 301.41000 * 25 15 14 47 47 H 1.08999 * 109.53048 * 181.33498 * 25 15 14 48 48 H 1.08997 * 109.58985 * 353.37327 * 26 12 10 49 49 H 1.08998 * 109.58880 * 113.65669 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1313 2.5232 0.0000 6 6 5.0256 2.9932 0.8948 7 6 5.3286 4.2652 0.5493 8 6 4.5907 4.5865 -0.6011 9 7 4.6169 5.8126 -1.2804 10 6 5.3988 6.8147 -0.8324 11 8 6.0135 6.6871 0.2090 12 7 5.4995 7.9582 -1.5386 13 6 4.6813 8.1703 -2.7404 14 6 3.9262 9.4996 -2.5890 15 6 4.9294 10.6202 -2.3062 16 6 4.1864 11.9527 -2.1919 17 6 3.5655 12.2974 -3.5211 18 1 3.6889 11.6327 -4.3633 19 6 2.8399 13.4613 -3.6619 20 7 2.6901 14.2709 -2.6365 21 14 2.0709 13.8888 -5.3097 22 1 1.1161 12.8212 -5.7022 23 1 1.3496 15.1821 -5.1987 24 1 3.1358 14.0031 -6.3383 25 6 5.6632 10.3313 -0.9947 26 6 6.4339 9.0138 -1.1248 27 7 3.8679 3.5407 -0.9258 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6438 -0.8891 34 1 3.8568 0.6440 0.8908 35 1 5.4280 2.4501 1.7371 36 1 6.0156 4.9183 1.0670 37 1 4.0693 5.9409 -2.0707 38 1 5.3256 8.2109 -3.6186 39 1 3.9677 7.3531 -2.8456 40 1 3.2193 9.4272 -1.7625 41 1 3.3870 9.7180 -3.5108 42 1 5.6510 10.6756 -3.1214 43 1 3.4050 11.8693 -1.4365 44 1 4.8876 12.7362 -1.9043 45 1 2.1799 15.0900 -2.7356 46 1 4.9399 10.2511 -0.1832 47 1 6.3608 11.1413 -0.7814 48 1 6.8772 8.7533 -0.1637 49 1 7.2196 9.1200 -1.8727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566008026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:47 Heat of formation + Delta-G solvation = -9.590779 kcal Electronic energy + Delta-G solvation = -28562.207867 eV Core-core repulsion = 24525.745430 eV Total energy + Delta-G solvation = -4036.462438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.46301 -41.34899 -39.07253 -38.83179 -36.25434 -35.74134 -34.30852 -33.62675 -31.96443 -31.10055 -29.98571 -29.36401 -27.11614 -26.39296 -24.53518 -24.21272 -23.66406 -22.59693 -21.88542 -21.09257 -20.33106 -19.09966 -18.42214 -18.38352 -17.65182 -17.14714 -17.02124 -16.71787 -16.55145 -16.41039 -15.95705 -15.45526 -15.30845 -15.20302 -14.78617 -14.67202 -14.54703 -14.28998 -14.13339 -14.03485 -13.74676 -13.37534 -13.09142 -12.95329 -12.76607 -12.65443 -12.47537 -12.35439 -12.31799 -12.14985 -11.83688 -11.75655 -11.73420 -11.34875 -11.18245 -10.95325 -10.82714 -10.76951 -10.49797 -9.93392 -9.70486 -9.15576 -8.14445 -6.23849 0.79601 0.96193 1.42686 1.44803 1.52167 1.58758 1.72134 2.29872 2.44031 2.62128 2.91539 3.19194 3.66024 3.87361 3.90360 3.91300 4.04828 4.08233 4.17697 4.20144 4.25963 4.41841 4.45742 4.47604 4.50466 4.59388 4.67576 4.68743 4.73380 4.82191 4.82396 4.85147 4.91205 4.95164 5.10002 5.16343 5.33314 5.34903 5.40618 5.55983 5.59477 5.71287 5.80269 5.84981 5.92367 5.99111 6.13854 6.30913 6.47896 6.90835 6.93257 7.33962 7.44742 8.97173 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.002062 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.118281 B =13574.939140 C =15068.577761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.142 3.858 5 N -0.368 5.368 6 C 0.089 3.911 7 C -0.297 4.297 8 C 0.304 3.696 9 N -0.644 5.644 10 C 0.715 3.285 11 O -0.599 6.599 12 N -0.615 5.615 13 C 0.114 3.886 14 C -0.113 4.113 15 C -0.073 4.073 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.937 5.937 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.266 1.266 25 C -0.122 4.122 26 C 0.137 3.863 27 N -0.351 5.351 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.223 0.777 36 H 0.157 0.843 37 H 0.419 0.581 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.068 0.932 43 H -0.017 1.017 44 H -0.012 1.012 45 H 0.260 0.740 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 -29.339 4.647 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.023 4.023 4 C 0.021 3.979 5 N -0.153 5.153 6 C -0.057 4.057 7 C -0.327 4.327 8 C 0.048 3.952 9 N -0.298 5.298 10 C 0.416 3.584 11 O -0.477 6.477 12 N -0.351 5.351 13 C -0.008 4.008 14 C -0.152 4.152 15 C -0.091 4.091 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.578 5.578 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.191 1.191 25 C -0.161 4.161 26 C 0.015 3.985 27 N -0.182 5.182 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.239 0.761 36 H 0.175 0.825 37 H 0.259 0.741 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.001 0.999 44 H 0.006 0.994 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.105 0.895 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.795 -29.994 4.595 30.397 hybrid contribution -0.736 1.812 -0.438 2.004 sum 1.059 -28.182 4.158 28.507 Atomic orbital electron populations 1.22956 0.78938 1.04257 1.00753 1.87743 1.21778 1.27023 1.95647 1.22596 0.93447 0.85074 1.01189 1.21601 0.91732 0.77557 1.06982 1.48180 1.34812 1.11321 1.20968 1.23174 0.92359 0.94348 0.95843 1.21890 1.11009 0.98345 1.01495 1.19114 0.96224 0.86238 0.93598 1.41753 1.46901 1.09373 1.31754 1.15637 0.79655 0.80216 0.82916 1.90810 1.51358 1.81310 1.24230 1.47379 1.43435 1.15574 1.28695 1.21990 0.94179 0.97650 0.87002 1.21861 0.97601 0.93574 1.02120 1.21035 0.96745 0.94841 0.96511 1.19034 0.93793 0.92424 0.95351 1.21652 1.31605 1.05535 0.97564 0.91331 1.25980 0.97381 0.96673 1.00204 1.70108 1.42359 1.12863 1.32498 0.85575 0.78764 0.77298 0.79850 1.19078 1.21660 1.19116 1.21933 0.99381 0.97039 0.97737 1.21558 0.90502 0.84561 1.01883 1.77241 1.26679 0.97016 1.17219 0.93261 0.93668 0.87600 0.92836 0.93235 0.88472 0.84300 0.76099 0.82534 0.74132 0.88808 0.88991 0.93863 0.90411 0.91395 0.99911 0.99396 0.93132 0.93747 0.90592 0.89477 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -5.79 10.70 -148.98 -1.59 -7.38 16 3 C 0.05 0.78 6.12 71.98 0.44 1.22 16 4 C 0.14 1.66 6.88 86.38 0.59 2.26 16 5 N -0.37 -6.80 3.68 -348.11 -1.28 -8.08 16 6 C 0.09 1.52 11.44 83.52 0.96 2.47 16 7 C -0.30 -7.57 9.61 22.11 0.21 -7.36 16 8 C 0.30 8.33 8.11 133.31 1.08 9.42 16 9 N -0.64 -16.89 5.36 -321.24 -1.72 -18.61 16 10 C 0.71 21.36 8.26 179.06 1.48 22.84 16 11 O -0.60 -20.95 12.91 -4.02 -0.05 -21.00 16 12 N -0.61 -16.80 2.97 -836.07 -2.48 -19.28 16 13 C 0.11 2.74 6.42 86.51 0.56 3.30 16 14 C -0.11 -3.70 5.21 30.82 0.16 -3.54 16 15 C -0.07 -2.72 2.10 -10.77 -0.02 -2.74 16 16 C 0.03 1.57 4.45 29.85 0.13 1.71 16 17 C -0.53 -28.30 8.39 25.60 0.21 -28.08 16 18 H 0.07 3.43 7.06 -2.91 -0.02 3.41 16 19 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 20 N -0.94 -56.82 13.29 21.45 0.28 -56.54 16 21 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 C -0.12 -4.01 5.36 30.67 0.16 -3.85 16 26 C 0.14 3.77 6.44 86.36 0.56 4.32 16 27 N -0.35 -8.85 12.43 -54.44 -0.68 -9.53 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.14 0.73 8.07 -2.39 -0.02 0.71 16 35 H 0.22 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.16 4.57 5.93 -2.91 -0.02 4.55 16 37 H 0.42 9.09 6.31 -92.71 -0.59 8.51 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 1.77 5.64 -2.39 -0.01 1.76 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 2.67 6.91 -2.39 -0.02 2.66 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 46 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 47 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.09 2.48 7.00 -2.39 -0.02 2.46 16 49 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.36 394.68 3.11 -71.26 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.37 Total: 20.22 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 8.23 Total: 3.63 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -5.87 Total: -112.05 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.65 Total: -28.38 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -74.36 3.11 -71.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566008026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.667 kcal (2) G-P(sol) polarization free energy of solvation -74.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds