Wall clock time and date at job start Tue Mar 31 2020 19:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46990 * 2 1 4 4 C 1.52999 * 109.47031 * 120.00193 * 2 1 3 5 5 C 1.53004 * 109.47119 * 64.99717 * 4 2 1 6 6 N 1.46494 * 109.47182 * 180.02562 * 5 4 2 7 7 C 1.46500 * 120.00232 * 270.00550 * 6 5 4 8 8 C 1.50700 * 109.46981 * 262.66256 * 7 6 5 9 9 H 1.08003 * 120.00041 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00253 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99909 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47227 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47286 * 120.00271 * 12 10 8 15 15 H 1.48501 * 109.47015 * 240.00139 * 12 10 8 16 16 C 1.34772 * 120.00143 * 89.99852 * 6 5 4 17 17 O 1.21433 * 119.99859 * 3.25840 * 16 6 5 18 18 C 1.48836 * 120.00302 * 183.25815 * 16 6 5 19 19 N 1.32731 * 119.98326 * 352.46739 * 18 16 6 20 20 C 1.33020 * 120.01552 * 179.72498 * 19 18 16 21 21 N 1.38019 * 120.00740 * 180.27559 * 20 19 18 22 22 N 1.32854 * 119.98248 * 0.55437 * 20 19 18 23 23 C 1.32835 * 119.97176 * 359.72067 * 22 20 19 24 24 N 1.38020 * 120.00914 * 179.97438 * 23 22 20 25 25 C 1.46506 * 119.99612 * 180.02562 * 24 23 22 26 26 C 1.46493 * 120.00233 * 0.03135 * 24 23 22 27 27 N 1.32702 * 119.98432 * 172.74930 * 18 16 6 28 28 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46975 * 300.00353 * 1 2 3 30 30 H 1.09002 * 109.46984 * 59.99645 * 1 2 3 31 31 H 1.08996 * 109.46950 * 240.00430 * 2 1 3 32 32 H 1.09009 * 109.47140 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47547 * 300.00010 * 3 2 1 34 34 H 1.08999 * 109.47419 * 60.00475 * 3 2 1 35 35 H 1.08998 * 109.46857 * 305.00161 * 4 2 1 36 36 H 1.08995 * 109.46908 * 185.00253 * 4 2 1 37 37 H 1.09002 * 109.46766 * 59.99985 * 5 4 2 38 38 H 1.08994 * 109.47084 * 300.00557 * 5 4 2 39 39 H 1.09005 * 109.47266 * 22.66421 * 7 6 5 40 40 H 1.08996 * 109.47884 * 142.66356 * 7 6 5 41 41 H 0.96997 * 120.00400 * 180.02562 * 11 10 8 42 42 H 0.97000 * 120.00378 * 180.27451 * 21 20 19 43 43 H 0.97005 * 120.00426 * 0.27904 * 21 20 19 44 44 H 1.08995 * 109.47365 * 0.02562 * 25 24 23 45 45 H 1.09001 * 109.46489 * 120.00290 * 25 24 23 46 46 H 1.09003 * 109.47215 * 240.00411 * 25 24 23 47 47 H 1.08997 * 109.47299 * 89.99489 * 26 24 23 48 48 H 1.08996 * 109.47029 * 209.99622 * 26 24 23 49 49 H 1.09004 * 109.47182 * 329.98991 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1229 -2.8860 2.3843 7 6 3.4512 -3.5040 2.3831 8 6 3.3201 -4.9758 2.0870 9 1 2.3450 -5.4076 1.9164 10 6 4.4452 -5.7711 2.0329 11 7 5.6327 -5.2453 2.2402 12 14 4.2827 -7.5953 1.6652 13 1 2.8502 -7.9358 1.4727 14 1 5.0398 -7.9206 0.4297 15 1 4.8291 -8.3798 2.8015 16 6 1.3498 -2.9526 3.4862 17 8 0.2263 -2.4923 3.4683 18 6 1.8730 -3.5904 4.7250 19 7 3.0387 -4.2248 4.7030 20 6 3.5095 -4.7903 5.8112 21 7 4.7244 -5.4450 5.7895 22 7 2.8075 -4.7296 6.9374 23 6 1.6384 -4.0993 6.9574 24 7 0.9081 -4.0363 8.1269 25 6 -0.3816 -3.3415 8.1485 26 6 1.4226 -4.6638 9.3465 27 7 1.1712 -3.5295 5.8496 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6443 1.2951 37 1 2.0698 -2.6550 0.3001 38 1 0.5489 -2.2724 1.1419 39 1 4.0702 -3.0335 1.6192 40 1 3.9154 -3.3700 3.3601 41 1 6.4243 -5.8046 2.2018 42 1 5.0658 -5.8608 6.5966 43 1 5.2370 -5.4893 4.9671 44 1 -0.5961 -2.9426 7.1572 45 1 -1.1663 -4.0413 8.4358 46 1 -0.3420 -2.5242 8.8687 47 1 2.0262 -3.9437 9.8989 48 1 0.5881 -4.9902 9.9670 49 1 2.0364 -5.5247 9.0811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579368349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:53 Heat of formation + Delta-G solvation = 60.618351 kcal Electronic energy + Delta-G solvation = -30611.964618 eV Core-core repulsion = 26610.839428 eV Total energy + Delta-G solvation = -4001.125190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03271 -38.95024 -37.01878 -36.52950 -34.82688 -34.69255 -32.56127 -32.35608 -31.03693 -29.22769 -28.05531 -26.99318 -26.94769 -26.00305 -24.98465 -23.00738 -22.46025 -21.84814 -19.77403 -19.23632 -18.53365 -17.34078 -16.49374 -16.00828 -15.88352 -15.63125 -15.24497 -15.07023 -14.91428 -14.54158 -14.33641 -14.18684 -14.03083 -13.66545 -13.42268 -13.19291 -13.01921 -12.48945 -12.30651 -12.22053 -12.15351 -12.04563 -11.90751 -11.66648 -11.50303 -11.33674 -10.98055 -10.93337 -10.78347 -10.72752 -10.46325 -10.42974 -10.22774 -10.01288 -9.64708 -9.50086 -8.86779 -8.57415 -8.44446 -8.14913 -7.93566 -7.59134 -6.02720 -4.00758 1.29725 1.95636 2.72350 3.23956 3.33338 3.38716 3.52276 3.58151 3.66462 4.40443 4.58660 4.71511 4.84304 5.08911 5.15631 5.16749 5.27927 5.29655 5.32074 5.40931 5.45277 5.65861 5.67478 5.75384 5.80725 5.85448 5.91857 5.95006 6.00597 6.03841 6.13426 6.27253 6.33858 6.37879 6.41703 6.64440 6.68492 6.70265 6.85543 6.99171 7.26824 7.45663 7.61995 7.69083 7.86562 7.91706 8.12450 8.29185 8.30174 8.83820 9.01927 9.15324 9.58086 11.04770 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007813 B = 0.005166 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.933741 B = 5418.600415 C = 8185.652543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.570 5.570 7 C 0.225 3.775 8 C -0.484 4.484 9 H 0.050 0.950 10 C 0.067 3.933 11 N -0.896 5.896 12 Si 0.879 3.121 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.582 3.418 17 O -0.539 6.539 18 C 0.395 3.605 19 N -0.531 5.531 20 C 0.618 3.382 21 N -0.802 5.802 22 N -0.655 5.655 23 C 0.614 3.386 24 N -0.588 5.588 25 C 0.096 3.904 26 C 0.106 3.894 27 N -0.601 5.601 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.084 0.916 41 H 0.258 0.742 42 H 0.406 0.594 43 H 0.431 0.569 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.065 0.935 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 5.560 6.847 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.005 4.005 6 N -0.300 5.300 7 C 0.106 3.894 8 C -0.524 4.524 9 H 0.069 0.931 10 C -0.133 4.133 11 N -0.538 5.538 12 Si 0.708 3.292 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.212 1.212 16 C 0.365 3.635 17 O -0.415 6.415 18 C 0.113 3.887 19 N -0.265 5.265 20 C 0.252 3.748 21 N -0.352 5.352 22 N -0.396 5.396 23 C 0.250 3.750 24 N -0.307 5.307 25 C -0.047 4.047 26 C -0.037 4.037 27 N -0.336 5.336 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.236 0.764 43 H 0.266 0.734 44 H 0.118 0.882 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.084 0.916 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.945 5.743 6.947 10.281 hybrid contribution 0.543 -1.591 -0.041 1.682 sum -4.402 4.151 6.906 9.182 Atomic orbital electron populations 1.21885 0.95331 1.02126 1.01171 1.21044 0.95849 0.95899 0.98444 1.21823 1.00916 0.96205 1.01276 1.22008 1.01264 0.95683 0.97743 1.21482 1.00168 0.91132 0.87728 1.48193 1.19706 1.51594 1.10491 1.20156 0.76566 0.92205 1.00481 1.21314 0.92829 0.93199 1.45023 0.93140 1.24697 0.95271 0.97419 0.95928 1.69956 0.97388 1.35037 1.51396 0.86740 0.78050 0.86490 0.77907 1.20193 1.21148 1.21219 1.17220 0.84703 0.79674 0.81882 1.90677 1.18741 1.48656 1.83458 1.22775 0.85495 0.88504 0.91929 1.69886 1.14835 1.16009 1.25781 1.19361 0.86622 0.85010 0.83854 1.41885 1.18135 1.58146 1.17016 1.67766 1.10448 1.30989 1.30401 1.18795 0.84858 0.85104 0.86284 1.45688 1.20564 1.58389 1.06095 1.21719 0.82338 0.95835 1.04810 1.21550 0.99171 0.98260 0.84751 1.68275 1.37242 1.29006 0.99105 0.92193 0.92714 0.93317 0.91120 0.92762 0.93071 0.92906 0.91923 0.91623 0.90160 0.90513 0.95438 0.89865 0.93261 0.76401 0.73350 0.88226 0.92712 0.92749 0.93277 0.91602 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.95 37.16 0.33 -1.49 16 2 C -0.09 -1.19 2.92 -90.62 -0.26 -1.46 16 3 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 4 C -0.13 -2.01 5.01 -26.73 -0.13 -2.15 16 5 C 0.12 2.14 5.15 -4.04 -0.02 2.12 16 6 N -0.57 -12.31 2.48 -175.81 -0.44 -12.75 16 7 C 0.23 5.32 4.77 -5.19 -0.02 5.30 16 8 C -0.48 -12.39 7.94 -34.44 -0.27 -12.66 16 9 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.90 -22.78 13.29 55.43 0.74 -22.05 16 12 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.58 13.31 7.64 -11.88 -0.09 13.22 16 17 O -0.54 -12.79 16.47 5.42 0.09 -12.70 16 18 C 0.39 8.94 7.51 -156.49 -1.17 7.77 16 19 N -0.53 -11.90 5.23 -11.88 -0.06 -11.96 16 20 C 0.62 12.52 8.76 -322.22 -2.82 9.70 16 21 N -0.80 -13.96 9.05 29.84 0.27 -13.69 16 22 N -0.65 -12.40 9.28 -14.78 -0.14 -12.53 16 23 C 0.61 11.67 8.19 -322.20 -2.64 9.03 16 24 N -0.59 -8.75 3.36 -191.77 -0.64 -9.39 16 25 C 0.10 1.18 10.71 59.85 0.64 1.82 16 26 C 0.11 1.19 10.50 59.84 0.63 1.81 16 27 N -0.60 -12.73 8.74 -11.88 -0.10 -12.83 16 28 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.08 1.40 5.80 -51.93 -0.30 1.10 16 39 H 0.03 0.68 8.02 -51.93 -0.42 0.26 16 40 H 0.08 2.08 5.29 -51.95 -0.27 1.81 16 41 H 0.26 6.28 8.31 -40.82 -0.34 5.94 16 42 H 0.41 5.63 8.95 -40.82 -0.37 5.26 16 43 H 0.43 8.24 8.95 -40.82 -0.37 7.87 16 44 H 0.10 1.48 6.80 -51.93 -0.35 1.13 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.55 8.07 -51.93 -0.42 0.14 16 49 H 0.08 0.97 7.37 -51.93 -0.38 0.59 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -29.70 401.01 -12.70 -42.40 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.83 Total: 10.76 kcal Atomic # 6 Polarization: 38.91 SS G_CDS: -5.60 Total: 33.31 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -0.38 Total: -95.19 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.70 -12.70 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579368349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.016 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds