Wall clock time and date at job start Tue Mar 31 2020 19:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46990 * 2 1 4 4 C 1.52999 * 109.47031 * 120.00193 * 2 1 3 5 5 C 1.53004 * 109.47119 * 64.99717 * 4 2 1 6 6 N 1.46494 * 109.47182 * 180.02562 * 5 4 2 7 7 C 1.46500 * 120.00232 * 270.00550 * 6 5 4 8 8 C 1.50700 * 109.46981 * 262.66256 * 7 6 5 9 9 H 1.08003 * 120.00041 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00253 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99909 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47227 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47286 * 120.00271 * 12 10 8 15 15 H 1.48501 * 109.47015 * 240.00139 * 12 10 8 16 16 C 1.34772 * 120.00143 * 89.99852 * 6 5 4 17 17 O 1.21433 * 119.99859 * 3.25840 * 16 6 5 18 18 C 1.48836 * 120.00302 * 183.25815 * 16 6 5 19 19 N 1.32731 * 119.98326 * 352.46739 * 18 16 6 20 20 C 1.33020 * 120.01552 * 179.72498 * 19 18 16 21 21 N 1.38019 * 120.00740 * 180.27559 * 20 19 18 22 22 N 1.32854 * 119.98248 * 0.55437 * 20 19 18 23 23 C 1.32835 * 119.97176 * 359.72067 * 22 20 19 24 24 N 1.38020 * 120.00914 * 179.97438 * 23 22 20 25 25 C 1.46506 * 119.99612 * 180.02562 * 24 23 22 26 26 C 1.46493 * 120.00233 * 0.03135 * 24 23 22 27 27 N 1.32702 * 119.98432 * 172.74930 * 18 16 6 28 28 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46975 * 300.00353 * 1 2 3 30 30 H 1.09002 * 109.46984 * 59.99645 * 1 2 3 31 31 H 1.08996 * 109.46950 * 240.00430 * 2 1 3 32 32 H 1.09009 * 109.47140 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47547 * 300.00010 * 3 2 1 34 34 H 1.08999 * 109.47419 * 60.00475 * 3 2 1 35 35 H 1.08998 * 109.46857 * 305.00161 * 4 2 1 36 36 H 1.08995 * 109.46908 * 185.00253 * 4 2 1 37 37 H 1.09002 * 109.46766 * 59.99985 * 5 4 2 38 38 H 1.08994 * 109.47084 * 300.00557 * 5 4 2 39 39 H 1.09005 * 109.47266 * 22.66421 * 7 6 5 40 40 H 1.08996 * 109.47884 * 142.66356 * 7 6 5 41 41 H 0.96997 * 120.00400 * 180.02562 * 11 10 8 42 42 H 0.97000 * 120.00378 * 180.27451 * 21 20 19 43 43 H 0.97005 * 120.00426 * 0.27904 * 21 20 19 44 44 H 1.08995 * 109.47365 * 0.02562 * 25 24 23 45 45 H 1.09001 * 109.46489 * 120.00290 * 25 24 23 46 46 H 1.09003 * 109.47215 * 240.00411 * 25 24 23 47 47 H 1.08997 * 109.47299 * 89.99489 * 26 24 23 48 48 H 1.08996 * 109.47029 * 209.99622 * 26 24 23 49 49 H 1.09004 * 109.47182 * 329.98991 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1229 -2.8860 2.3843 7 6 3.4512 -3.5040 2.3831 8 6 3.3201 -4.9758 2.0870 9 1 2.3450 -5.4076 1.9164 10 6 4.4452 -5.7711 2.0329 11 7 5.6327 -5.2453 2.2402 12 14 4.2827 -7.5953 1.6652 13 1 2.8502 -7.9358 1.4727 14 1 5.0398 -7.9206 0.4297 15 1 4.8291 -8.3798 2.8015 16 6 1.3498 -2.9526 3.4862 17 8 0.2263 -2.4923 3.4683 18 6 1.8730 -3.5904 4.7250 19 7 3.0387 -4.2248 4.7030 20 6 3.5095 -4.7903 5.8112 21 7 4.7244 -5.4450 5.7895 22 7 2.8075 -4.7296 6.9374 23 6 1.6384 -4.0993 6.9574 24 7 0.9081 -4.0363 8.1269 25 6 -0.3816 -3.3415 8.1485 26 6 1.4226 -4.6638 9.3465 27 7 1.1712 -3.5295 5.8496 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1263 -0.6443 1.2951 37 1 2.0698 -2.6550 0.3001 38 1 0.5489 -2.2724 1.1419 39 1 4.0702 -3.0335 1.6192 40 1 3.9154 -3.3700 3.3601 41 1 6.4243 -5.8046 2.2018 42 1 5.0658 -5.8608 6.5966 43 1 5.2370 -5.4893 4.9671 44 1 -0.5961 -2.9426 7.1572 45 1 -1.1663 -4.0413 8.4358 46 1 -0.3420 -2.5242 8.8687 47 1 2.0262 -3.9437 9.8989 48 1 0.5881 -4.9902 9.9670 49 1 2.0364 -5.5247 9.0811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579368349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:52 Heat of formation + Delta-G solvation = 48.068143 kcal Electronic energy + Delta-G solvation = -30612.508836 eV Core-core repulsion = 26610.839428 eV Total energy + Delta-G solvation = -4001.669408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57230 -40.62718 -38.29188 -37.86211 -36.40473 -36.23199 -34.33938 -33.92002 -32.53061 -30.67714 -29.13509 -28.74076 -27.96275 -27.34714 -26.40652 -24.84439 -23.95559 -23.20203 -20.95066 -20.74741 -20.05098 -18.90911 -18.35517 -17.60786 -17.41315 -17.09180 -16.72094 -16.53479 -16.20311 -16.17016 -15.88595 -15.35523 -15.31620 -15.23768 -14.80365 -14.51183 -14.43156 -14.12366 -13.67809 -13.35308 -13.28773 -13.14535 -13.07193 -12.96538 -12.90846 -12.78605 -12.72595 -12.57232 -12.21352 -12.09052 -11.99544 -11.90030 -11.50070 -11.45283 -11.38577 -11.28328 -10.48005 -10.43736 -9.87833 -9.83143 -9.40993 -9.18019 -7.98901 -6.02171 -0.34370 0.44633 1.38341 1.42594 1.44705 1.51920 1.79940 1.99517 2.22041 2.49438 3.00667 3.11518 3.32660 3.46071 3.75585 3.98024 3.99806 4.11254 4.24866 4.36187 4.46016 4.55338 4.58587 4.70477 4.75406 4.79071 4.81926 4.86030 4.94986 4.97026 5.00939 5.07329 5.08052 5.16788 5.22047 5.34693 5.41575 5.48562 5.51452 5.55030 5.60437 5.89343 5.92423 6.02006 6.17048 6.27968 6.35943 6.46864 6.74138 6.97896 7.16011 7.58407 7.60291 9.08090 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.007813 B = 0.005166 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.933741 B = 5418.600415 C = 8185.652543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.117 4.117 5 C 0.114 3.886 6 N -0.570 5.570 7 C 0.243 3.757 8 C -0.494 4.494 9 H 0.027 0.973 10 C 0.045 3.955 11 N -0.906 5.906 12 Si 0.924 3.076 13 H -0.292 1.292 14 H -0.281 1.281 15 H -0.277 1.277 16 C 0.576 3.424 17 O -0.557 6.557 18 C 0.378 3.622 19 N -0.555 5.555 20 C 0.605 3.395 21 N -0.788 5.788 22 N -0.645 5.645 23 C 0.599 3.401 24 N -0.581 5.581 25 C 0.093 3.907 26 C 0.102 3.898 27 N -0.613 5.613 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.016 0.984 40 H 0.075 0.925 41 H 0.263 0.737 42 H 0.422 0.578 43 H 0.425 0.575 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.101 0.899 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 5.547 7.825 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.156 4.156 5 C -0.008 4.008 6 N -0.299 5.299 7 C 0.123 3.877 8 C -0.533 4.533 9 H 0.045 0.955 10 C -0.155 4.155 11 N -0.547 5.547 12 Si 0.753 3.247 13 H -0.218 1.218 14 H -0.206 1.206 15 H -0.202 1.202 16 C 0.359 3.641 17 O -0.435 6.435 18 C 0.096 3.904 19 N -0.291 5.291 20 C 0.238 3.762 21 N -0.338 5.338 22 N -0.387 5.387 23 C 0.234 3.766 24 N -0.299 5.299 25 C -0.049 4.049 26 C -0.040 4.040 27 N -0.350 5.350 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.034 0.966 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.255 0.745 43 H 0.259 0.741 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.120 0.880 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.054 5.723 7.992 11.053 hybrid contribution 0.535 -1.602 -0.237 1.706 sum -4.519 4.121 7.755 9.876 Atomic orbital electron populations 1.21864 0.94885 1.01626 1.01920 1.21044 0.96189 0.96726 0.96923 1.21793 1.00973 0.94969 1.02146 1.21904 1.00781 0.94016 0.98866 1.21684 0.99996 0.92510 0.86574 1.48234 1.19006 1.51413 1.11229 1.19807 0.77209 0.91298 0.99360 1.21232 0.91915 0.94144 1.46005 0.95500 1.25051 0.95077 0.99685 0.95663 1.69991 0.97635 1.35956 1.51090 0.86059 0.76957 0.83615 0.78101 1.21807 1.20649 1.20234 1.17421 0.84630 0.79628 0.82388 1.90641 1.19288 1.49629 1.83894 1.22722 0.86116 0.89235 0.92346 1.69760 1.15093 1.17069 1.27139 1.19612 0.87407 0.85238 0.83932 1.41802 1.17089 1.57467 1.17464 1.67889 1.10409 1.31073 1.29358 1.19291 0.85297 0.84898 0.87087 1.46177 1.20637 1.57487 1.05585 1.21886 0.81847 0.97215 1.03980 1.21807 1.00694 0.97980 0.83524 1.68299 1.37428 1.29819 0.99466 0.93332 0.93411 0.91096 0.90350 0.92690 0.91142 0.93099 0.93350 0.92182 0.89838 0.90728 0.96637 0.90835 0.92742 0.74464 0.74115 0.91177 0.90054 0.89965 0.92012 0.88044 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 71.98 0.64 -2.84 16 2 C -0.09 -2.23 2.92 -10.79 -0.03 -2.26 16 3 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 4 C -0.12 -3.73 5.01 30.60 0.15 -3.58 16 5 C 0.11 4.27 5.15 86.38 0.45 4.72 16 6 N -0.57 -25.50 2.48 -828.46 -2.05 -27.56 16 7 C 0.24 11.83 4.77 85.63 0.41 12.24 16 8 C -0.49 -25.78 7.94 25.60 0.20 -25.57 16 9 H 0.03 1.51 7.81 -2.91 -0.02 1.48 16 10 C 0.04 2.26 5.46 84.65 0.46 2.72 16 11 N -0.91 -45.75 13.29 21.45 0.28 -45.46 16 12 Si 0.92 41.71 29.54 68.60 2.03 43.73 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.58 27.32 7.64 87.08 0.67 27.99 16 17 O -0.56 -27.35 16.47 -3.50 -0.06 -27.41 16 18 C 0.38 17.65 7.51 137.62 1.03 18.69 16 19 N -0.55 -25.44 5.23 -191.50 -1.00 -26.44 16 20 C 0.61 24.61 8.76 261.28 2.29 26.90 16 21 N -0.79 -27.10 9.05 -59.50 -0.54 -27.64 16 22 N -0.65 -24.13 9.28 -200.67 -1.86 -25.99 16 23 C 0.60 22.52 8.19 261.28 2.14 24.66 16 24 N -0.58 -16.20 3.36 -760.62 -2.56 -18.76 16 25 C 0.09 2.09 10.71 127.77 1.37 3.46 16 26 C 0.10 1.98 10.50 127.77 1.34 3.32 16 27 N -0.61 -26.45 8.74 -191.49 -1.67 -28.12 16 28 H 0.05 1.26 6.57 -2.39 -0.02 1.24 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 3.03 8.07 -2.39 -0.02 3.01 16 38 H 0.07 2.82 5.80 -2.39 -0.01 2.80 16 39 H 0.02 0.79 8.02 -2.38 -0.02 0.77 16 40 H 0.07 3.79 5.29 -2.42 -0.01 3.78 16 41 H 0.26 12.59 8.31 -92.71 -0.77 11.82 16 42 H 0.42 11.28 8.95 -92.71 -0.83 10.45 16 43 H 0.42 16.13 8.95 -92.70 -0.83 15.30 16 44 H 0.07 2.05 6.80 -2.39 -0.02 2.04 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 1.29 8.07 -2.39 -0.02 1.27 16 49 H 0.07 1.53 7.37 -2.38 -0.02 1.51 16 Total: -1.00 -64.67 401.01 3.67 -61.00 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.68 Total: 34.52 kcal Atomic # 6 Polarization: 76.35 SS G_CDS: 11.78 Total: 88.14 kcal Atomic # 7 Polarization: -190.58 SS G_CDS: -9.40 Total: -199.98 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -64.67 3.67 -61.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579368349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.069 kcal (2) G-P(sol) polarization free energy of solvation -64.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds