Wall clock time and date at job start Tue Mar 31 2020 19:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47418 * 180.02562 * 5 3 2 7 7 C 1.35308 * 125.86871 * 124.99928 * 6 5 3 8 8 C 1.35348 * 106.17156 * 180.02562 * 7 6 5 9 9 C 1.50703 * 126.75182 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47275 * 124.99669 * 9 8 7 11 11 N 1.46898 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.46842 * 111.00180 * 45.79305 * 11 10 9 13 13 C 1.53035 * 109.52383 * 185.83898 * 12 11 10 14 14 C 1.53121 * 109.28082 * 300.81912 * 13 12 11 15 15 C 1.52997 * 109.52582 * 177.55873 * 14 13 12 16 16 C 1.50697 * 109.47303 * 65.31729 * 15 14 13 17 17 H 1.08000 * 119.99579 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00452 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99533 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00498 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47405 * 120.00072 * 20 18 16 23 23 H 1.48497 * 109.47250 * 240.00295 * 20 18 16 24 24 C 1.53117 * 109.15926 * 57.64935 * 14 13 12 25 25 C 1.46850 * 110.99646 * 170.00420 * 11 10 9 26 26 N 1.33773 * 106.49959 * 359.97438 * 8 7 6 27 27 N 1.28630 * 108.88238 * 359.73733 * 26 8 7 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 32 32 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 33 33 H 1.08000 * 126.91429 * 0.02562 * 7 6 5 34 34 H 1.08994 * 109.47649 * 244.99946 * 9 8 7 35 35 H 1.08998 * 109.46864 * 5.00098 * 9 8 7 36 36 H 1.09007 * 109.46884 * 300.00395 * 10 9 8 37 37 H 1.08994 * 109.46671 * 59.99926 * 10 9 8 38 38 H 1.09001 * 109.46046 * 305.85257 * 12 11 10 39 39 H 1.08991 * 109.46552 * 65.82115 * 12 11 10 40 40 H 1.09001 * 109.50597 * 180.87778 * 13 12 11 41 41 H 1.09004 * 109.50251 * 60.75815 * 13 12 11 42 42 H 1.08998 * 109.51688 * 297.75240 * 14 13 12 43 43 H 1.08999 * 109.46812 * 185.31947 * 15 14 13 44 44 H 1.09004 * 109.47000 * 305.31550 * 15 14 13 45 45 H 0.97001 * 120.00208 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.50693 * 182.40827 * 24 14 13 47 47 H 1.09006 * 109.53373 * 62.30867 * 24 14 13 48 48 H 1.09008 * 109.46016 * 294.16873 * 25 11 10 49 49 H 1.08993 * 109.46651 * 54.14951 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.8100 3.2612 0.8984 8 6 4.9198 4.5577 0.5258 9 6 5.7346 5.6261 1.2083 10 6 6.6877 6.2652 0.1962 11 7 7.4823 7.3062 0.8616 12 6 8.0040 6.8282 2.1483 13 6 8.7006 7.9795 2.8773 14 6 9.8434 8.5107 2.0076 15 6 10.5051 9.7014 2.7041 16 6 11.1653 9.2358 3.9763 17 1 11.1181 8.1947 4.2594 18 6 11.8306 10.1387 4.7782 19 7 11.8886 11.4065 4.4331 20 14 12.6496 9.5615 6.3546 21 1 12.4404 8.1000 6.5147 22 1 14.1049 9.8497 6.2907 23 1 12.0539 10.2759 7.5122 24 6 9.2803 8.9570 0.6555 25 6 8.5668 7.7775 -0.0091 26 7 4.1637 4.7040 -0.5680 27 7 3.6261 3.5717 -0.8570 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 0.8893 32 1 3.9558 0.7809 -0.8907 33 1 5.2874 2.7862 1.7427 34 1 5.0686 6.3887 1.6119 35 1 6.3110 5.1810 2.0192 36 1 7.3537 5.5025 -0.2074 37 1 6.1112 6.7103 -0.6147 38 1 7.1807 6.4571 2.7587 39 1 8.7182 6.0235 1.9743 40 1 9.1013 7.6205 3.8253 41 1 7.9835 8.7789 3.0639 42 1 10.5801 7.7224 1.8530 43 1 11.2550 10.1375 2.0442 44 1 9.7491 10.4503 2.9402 45 1 12.3569 12.0417 4.9970 46 1 10.0952 9.2965 0.0160 47 1 8.5725 9.7721 0.8066 48 1 9.2785 6.9682 -0.1730 49 1 8.1524 8.0959 -0.9655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592135552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:16 Heat of formation + Delta-G solvation = 12.526264 kcal Electronic energy + Delta-G solvation = -28136.887217 eV Core-core repulsion = 24101.383846 eV Total energy + Delta-G solvation = -4035.503371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.63043 -41.08981 -38.84447 -37.33125 -35.66457 -34.74406 -33.01045 -31.89281 -30.43092 -30.27170 -29.13903 -27.78663 -27.15185 -24.41399 -23.31200 -22.85399 -22.51120 -21.72758 -20.84668 -20.17306 -18.85179 -18.62994 -18.04506 -17.31265 -16.96582 -16.24934 -16.17938 -15.78857 -15.31247 -14.83657 -14.59641 -14.45637 -14.25106 -14.19203 -13.78312 -13.43942 -13.21222 -13.11596 -13.03449 -12.77430 -12.22165 -12.04970 -11.93900 -11.74484 -11.55441 -11.50824 -11.41502 -11.21128 -11.10386 -10.84441 -10.73559 -10.57947 -10.50018 -10.41309 -10.20614 -9.85977 -9.46128 -9.38425 -8.97374 -8.80976 -8.28954 -7.98577 -5.93620 -3.94834 1.04390 1.37372 1.52516 2.16463 2.32150 3.33580 3.41189 3.44346 3.68297 3.89078 4.05431 4.14213 4.17381 4.47998 4.50347 4.57515 4.64101 4.72216 4.90885 5.07038 5.15631 5.34325 5.40318 5.41890 5.48244 5.55485 5.57566 5.66534 5.77866 5.85804 5.95634 6.02718 6.04155 6.08937 6.14605 6.21643 6.32777 6.52512 6.66222 6.75164 6.92615 7.05479 7.17559 7.26615 7.42247 7.47651 7.75989 7.93249 8.08007 8.22796 8.51051 9.12144 9.68377 11.17784 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.001668 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.428936 B =16778.013082 C =17567.090358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.447 3.553 4 O -0.472 6.472 5 C 0.131 3.869 6 N -0.297 5.297 7 C -0.048 4.048 8 C -0.005 4.005 9 C -0.038 4.038 10 C 0.064 3.936 11 N -0.536 5.536 12 C 0.048 3.952 13 C -0.100 4.100 14 C -0.081 4.081 15 C 0.027 3.973 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.112 4.112 25 C 0.061 3.939 26 N -0.254 5.254 27 N -0.062 5.062 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.194 0.806 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.028 0.972 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.014 0.986 44 H 0.017 0.983 45 H 0.258 0.742 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.438 -26.468 -9.025 34.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.286 3.714 4 O -0.356 6.356 5 C 0.007 3.993 6 N -0.092 5.092 7 C -0.197 4.197 8 C -0.142 4.142 9 C -0.077 4.077 10 C -0.064 4.064 11 N -0.261 5.261 12 C -0.080 4.080 13 C -0.138 4.138 14 C -0.100 4.100 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.150 4.150 25 C -0.067 4.067 26 N -0.122 5.122 27 N -0.042 5.042 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.211 0.789 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.767 -25.336 -10.133 34.290 hybrid contribution 1.387 -1.350 1.716 2.586 sum -19.380 -26.686 -8.418 34.038 Atomic orbital electron populations 1.23380 0.74893 1.04233 1.03108 1.86442 1.24448 1.32072 1.84216 1.23263 0.91392 0.82438 0.74347 1.90839 1.66217 1.36029 1.42510 1.21255 0.89974 0.78694 1.09357 1.46749 1.32582 1.09768 1.20127 1.23397 1.01548 0.94909 0.99802 1.22067 1.01520 0.94279 0.96331 1.20135 0.96228 0.94409 0.96974 1.22000 0.95057 0.92800 0.96539 1.62023 1.23864 1.35828 1.04362 1.22339 0.97656 0.97367 0.90592 1.21553 0.97144 0.96701 0.98401 1.21231 0.95802 0.99798 0.93172 1.19124 0.95145 0.92093 0.94621 1.21299 1.33036 0.94426 1.06338 0.92677 1.25020 0.96592 0.94956 0.97975 1.69978 1.43360 1.02041 1.38169 0.86604 0.79202 0.78770 0.83809 1.19841 1.21175 1.21121 1.21694 0.98918 0.96924 0.97450 1.22087 0.91583 0.97467 0.95540 1.75128 1.09070 1.14299 1.13723 1.78425 1.18924 0.92781 1.14029 0.91530 0.91396 0.87455 0.83294 0.83942 0.78902 0.88851 0.89564 0.95421 0.90104 0.91032 0.95596 0.91009 0.91819 0.93161 0.96813 0.96471 0.93193 0.92216 0.91543 0.95506 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 10.56 101.05 1.07 1.20 16 2 O -0.36 -1.84 10.57 -39.24 -0.41 -2.26 16 3 C 0.45 3.06 7.97 36.00 0.29 3.34 16 4 O -0.47 -5.42 15.44 -18.76 -0.29 -5.71 16 5 C 0.13 0.50 7.05 -5.19 -0.04 0.46 16 6 N -0.30 -2.59 3.19 -62.44 -0.20 -2.79 16 7 C -0.05 -0.39 11.49 -17.05 -0.20 -0.58 16 8 C 0.00 -0.05 6.50 -82.78 -0.54 -0.59 16 9 C -0.04 -0.41 5.04 -27.88 -0.14 -0.55 16 10 C 0.06 0.81 5.25 -3.82 -0.02 0.79 16 11 N -0.54 -7.93 4.81 -234.67 -1.13 -9.05 16 12 C 0.05 0.71 4.85 -3.84 -0.02 0.69 16 13 C -0.10 -1.87 5.15 -26.65 -0.14 -2.00 16 14 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 15 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 16 C -0.51 -14.31 8.44 -34.44 -0.29 -14.60 16 17 H 0.06 1.49 7.08 -52.49 -0.37 1.12 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 C -0.11 -1.99 5.38 -26.65 -0.14 -2.14 16 25 C 0.06 0.93 5.42 -3.83 -0.02 0.91 16 26 N -0.25 -3.58 12.40 33.29 0.41 -3.16 16 27 N -0.06 -0.81 12.15 60.35 0.73 -0.07 16 28 H 0.07 0.26 8.13 -51.93 -0.42 -0.16 16 29 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 30 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.15 -0.07 8.07 -51.92 -0.42 -0.48 16 32 H 0.14 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.79 6.19 -51.93 -0.32 0.47 16 36 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.92 5.81 -51.93 -0.30 0.61 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.41 7.05 -51.93 -0.37 1.04 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 49 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 398.66 15.07 6.01 6.01 Total: -1.00 -37.08 398.66 -7.87 -44.95 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -8.10 Total: -5.31 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.61 Total: -12.88 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.56 Total: -41.42 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.70 Total: -7.96 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.08 -7.87 -44.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.478 kcal (2) G-P(sol) polarization free energy of solvation -37.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds