Wall clock time and date at job start Tue Mar 31 2020 19:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47418 * 180.02562 * 5 3 2 7 7 C 1.35308 * 125.86871 * 124.99928 * 6 5 3 8 8 C 1.35348 * 106.17156 * 180.02562 * 7 6 5 9 9 C 1.50703 * 126.75182 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47275 * 124.99669 * 9 8 7 11 11 N 1.46898 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.46842 * 111.00180 * 45.79305 * 11 10 9 13 13 C 1.53035 * 109.52383 * 185.83898 * 12 11 10 14 14 C 1.53121 * 109.28082 * 300.81912 * 13 12 11 15 15 C 1.52997 * 109.52582 * 177.55873 * 14 13 12 16 16 C 1.50697 * 109.47303 * 65.31729 * 15 14 13 17 17 H 1.08000 * 119.99579 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00452 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99533 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00498 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46937 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47405 * 120.00072 * 20 18 16 23 23 H 1.48497 * 109.47250 * 240.00295 * 20 18 16 24 24 C 1.53117 * 109.15926 * 57.64935 * 14 13 12 25 25 C 1.46850 * 110.99646 * 170.00420 * 11 10 9 26 26 N 1.33773 * 106.49959 * 359.97438 * 8 7 6 27 27 N 1.28630 * 108.88238 * 359.73733 * 26 8 7 28 28 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 32 32 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 33 33 H 1.08000 * 126.91429 * 0.02562 * 7 6 5 34 34 H 1.08994 * 109.47649 * 244.99946 * 9 8 7 35 35 H 1.08998 * 109.46864 * 5.00098 * 9 8 7 36 36 H 1.09007 * 109.46884 * 300.00395 * 10 9 8 37 37 H 1.08994 * 109.46671 * 59.99926 * 10 9 8 38 38 H 1.09001 * 109.46046 * 305.85257 * 12 11 10 39 39 H 1.08991 * 109.46552 * 65.82115 * 12 11 10 40 40 H 1.09001 * 109.50597 * 180.87778 * 13 12 11 41 41 H 1.09004 * 109.50251 * 60.75815 * 13 12 11 42 42 H 1.08998 * 109.51688 * 297.75240 * 14 13 12 43 43 H 1.08999 * 109.46812 * 185.31947 * 15 14 13 44 44 H 1.09004 * 109.47000 * 305.31550 * 15 14 13 45 45 H 0.97001 * 120.00208 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.50693 * 182.40827 * 24 14 13 47 47 H 1.09006 * 109.53373 * 62.30867 * 24 14 13 48 48 H 1.09008 * 109.46016 * 294.16873 * 25 11 10 49 49 H 1.08993 * 109.46651 * 54.14951 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.8100 3.2612 0.8984 8 6 4.9198 4.5577 0.5258 9 6 5.7346 5.6261 1.2083 10 6 6.6877 6.2652 0.1962 11 7 7.4823 7.3062 0.8616 12 6 8.0040 6.8282 2.1483 13 6 8.7006 7.9795 2.8773 14 6 9.8434 8.5107 2.0076 15 6 10.5051 9.7014 2.7041 16 6 11.1653 9.2358 3.9763 17 1 11.1181 8.1947 4.2594 18 6 11.8306 10.1387 4.7782 19 7 11.8886 11.4065 4.4331 20 14 12.6496 9.5615 6.3546 21 1 12.4404 8.1000 6.5147 22 1 14.1049 9.8497 6.2907 23 1 12.0539 10.2759 7.5122 24 6 9.2803 8.9570 0.6555 25 6 8.5668 7.7775 -0.0091 26 7 4.1637 4.7040 -0.5680 27 7 3.6261 3.5717 -0.8570 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 0.8893 32 1 3.9558 0.7809 -0.8907 33 1 5.2874 2.7862 1.7427 34 1 5.0686 6.3887 1.6119 35 1 6.3110 5.1810 2.0192 36 1 7.3537 5.5025 -0.2074 37 1 6.1112 6.7103 -0.6147 38 1 7.1807 6.4571 2.7587 39 1 8.7182 6.0235 1.9743 40 1 9.1013 7.6205 3.8253 41 1 7.9835 8.7789 3.0639 42 1 10.5801 7.7224 1.8530 43 1 11.2550 10.1375 2.0442 44 1 9.7491 10.4503 2.9402 45 1 12.3569 12.0417 4.9970 46 1 10.0952 9.2965 0.0160 47 1 8.5725 9.7721 0.8066 48 1 9.2785 6.9682 -0.1730 49 1 8.1524 8.0959 -0.9655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592135552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:15 Heat of formation + Delta-G solvation = -13.204683 kcal Electronic energy + Delta-G solvation = -28138.002994 eV Core-core repulsion = 24101.383846 eV Total energy + Delta-G solvation = -4036.619149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.31793 -41.59096 -40.13740 -37.83857 -36.79837 -35.74764 -34.60601 -33.25987 -31.70092 -30.90745 -30.30643 -28.72487 -28.07423 -25.99099 -24.42669 -23.89873 -23.53706 -22.57092 -22.01919 -21.15581 -20.37626 -19.09623 -18.61141 -18.38165 -17.78980 -17.45899 -17.07328 -16.66552 -16.43326 -16.10353 -15.84689 -15.39799 -15.11084 -14.93660 -14.74212 -14.64021 -14.44368 -14.39415 -13.89843 -13.72707 -13.42992 -13.21878 -13.09854 -12.93493 -12.82275 -12.70496 -12.50470 -12.34368 -12.20079 -12.08279 -11.98904 -11.93692 -11.92078 -11.64979 -11.53949 -11.17943 -11.09936 -10.77304 -10.64813 -10.48191 -10.10740 -9.13095 -8.13678 -6.23351 0.47059 0.91307 1.07653 1.42345 1.42572 1.52084 1.55558 1.77007 2.44907 2.97753 3.19616 3.32964 3.53768 3.67184 3.90920 4.01284 4.05163 4.10893 4.13409 4.19806 4.24020 4.26703 4.28505 4.39320 4.48165 4.57317 4.64157 4.67472 4.72780 4.74116 4.83262 4.88612 5.00228 5.02439 5.15247 5.16723 5.20423 5.23490 5.28151 5.42839 5.47750 5.52638 5.53309 5.62645 5.86163 5.93874 6.24961 6.28271 6.35599 6.47299 6.93433 7.45083 7.49036 8.98589 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.001668 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.428936 B =16778.013082 C =17567.090358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.448 3.552 4 O -0.528 6.528 5 C 0.125 3.875 6 N -0.291 5.291 7 C -0.021 4.021 8 C -0.034 4.034 9 C -0.029 4.029 10 C 0.073 3.927 11 N -0.549 5.549 12 C 0.058 3.942 13 C -0.096 4.096 14 C -0.075 4.075 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.064 0.936 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.962 3.038 21 H -0.258 1.258 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.107 4.107 25 C 0.068 3.932 26 N -0.300 5.300 27 N -0.105 5.105 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.139 0.861 31 H 0.203 0.797 32 H 0.173 0.827 33 H 0.245 0.755 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.050 0.950 43 H -0.017 1.017 44 H -0.014 1.014 45 H 0.261 0.739 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.035 0.965 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.193 -30.565 -7.758 36.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C 0.290 3.710 4 O -0.416 6.416 5 C 0.004 3.996 6 N -0.086 5.086 7 C -0.170 4.170 8 C -0.172 4.172 9 C -0.068 4.068 10 C -0.055 4.055 11 N -0.274 5.274 12 C -0.069 4.069 13 C -0.134 4.134 14 C -0.093 4.093 15 C -0.005 4.005 16 C -0.564 4.564 17 H 0.082 0.918 18 C -0.202 4.202 19 N -0.579 5.579 20 Si 0.787 3.213 21 H -0.182 1.182 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.145 4.145 25 C -0.060 4.060 26 N -0.167 5.167 27 N -0.084 5.084 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.157 0.843 31 H 0.220 0.780 32 H 0.190 0.810 33 H 0.261 0.739 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.001 0.999 44 H 0.004 0.996 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.548 -29.486 -8.900 37.025 hybrid contribution 1.271 -0.119 1.310 1.829 sum -19.277 -29.606 -7.590 36.135 Atomic orbital electron populations 1.23584 0.74242 1.06041 1.02374 1.86454 1.25154 1.31224 1.83602 1.23914 0.92640 0.81924 0.72529 1.90832 1.67645 1.37779 1.45374 1.21917 0.87768 0.76572 1.13355 1.47104 1.31573 1.10889 1.19050 1.24100 0.99604 0.93726 0.99608 1.22262 1.02407 0.95925 0.96602 1.20036 0.95708 0.94234 0.96849 1.21911 0.94878 0.92132 0.96601 1.61958 1.23751 1.37189 1.04494 1.22234 0.98494 0.95603 0.90584 1.21446 0.96167 0.97693 0.98075 1.21090 0.96352 0.97405 0.94501 1.19024 0.93726 0.93428 0.94296 1.21696 1.32863 0.94880 1.06969 0.91791 1.25990 0.97343 0.94978 1.01864 1.70128 1.44439 1.03470 1.39817 0.85433 0.77866 0.79011 0.78950 1.18159 1.20779 1.20699 1.21600 0.98823 0.97865 0.96244 1.21979 0.91837 0.96379 0.95784 1.75051 1.10437 1.15630 1.15598 1.78338 1.20502 0.93465 1.16059 0.92113 0.92401 0.84331 0.78034 0.80986 0.73924 0.90133 0.87165 0.94778 0.91558 0.88289 0.94495 0.92080 0.93523 0.93202 0.99863 0.99570 0.93068 0.92241 0.92932 0.94676 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.35 -2.91 10.57 -51.35 -0.54 -3.45 16 3 C 0.45 5.37 7.97 71.23 0.57 5.94 16 4 O -0.53 -12.16 15.44 21.94 0.34 -11.82 16 5 C 0.12 0.48 7.05 85.63 0.60 1.08 16 6 N -0.29 -4.30 3.19 -351.46 -1.12 -5.42 16 7 C -0.02 -0.25 11.49 83.49 0.96 0.70 16 8 C -0.03 -0.69 6.50 41.60 0.27 -0.42 16 9 C -0.03 -0.56 5.04 29.85 0.15 -0.41 16 10 C 0.07 1.71 5.25 86.31 0.45 2.16 16 11 N -0.55 -15.33 4.81 -896.37 -4.31 -19.64 16 12 C 0.06 1.59 4.85 86.33 0.42 2.01 16 13 C -0.10 -3.53 5.15 30.65 0.16 -3.37 16 14 C -0.07 -3.11 2.20 -10.71 -0.02 -3.13 16 15 C 0.03 1.74 4.45 29.85 0.13 1.87 16 16 C -0.53 -29.79 8.44 25.60 0.22 -29.57 16 17 H 0.06 3.43 7.08 -2.91 -0.02 3.41 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 20 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C -0.11 -3.87 5.38 30.65 0.16 -3.70 16 25 C 0.07 1.99 5.42 86.33 0.47 2.46 16 26 N -0.30 -8.42 12.40 -48.60 -0.60 -9.02 16 27 N -0.10 -2.67 12.15 37.02 0.45 -2.22 16 28 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 30 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.20 -1.40 8.07 -2.38 -0.02 -1.42 16 32 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.24 0.23 8.06 -2.91 -0.02 0.20 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 1.55 6.19 -2.39 -0.01 1.54 16 36 H 0.03 0.77 8.08 -2.38 -0.02 0.75 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 2.19 5.81 -2.39 -0.01 2.17 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.06 2.35 7.05 -2.39 -0.02 2.33 16 41 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 46 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 Total: -1.00 -86.53 398.66 3.65 -82.87 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 0.93 Total: 2.97 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 6.20 Total: -22.82 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -5.30 Total: -94.15 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.20 Total: -15.28 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -86.53 3.65 -82.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592135552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.667 kcal (2) G-P(sol) polarization free energy of solvation -86.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds