Wall clock time and date at job start Tue Mar 31 2020 19:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00320 * 2 1 4 4 C 1.38030 * 119.99723 * 179.97438 * 2 1 3 5 5 N 1.32863 * 120.00613 * 180.02562 * 4 2 1 6 6 C 1.32825 * 119.96369 * 179.97438 * 5 4 2 7 7 N 1.38030 * 120.00584 * 180.02562 * 6 5 4 8 8 N 1.33050 * 119.98786 * 359.74938 * 6 5 4 9 9 C 1.32701 * 120.00941 * 0.50585 * 8 6 5 10 10 C 1.48835 * 119.97729 * 179.77068 * 9 8 6 11 11 O 1.21442 * 119.99865 * 172.38145 * 10 9 8 12 12 N 1.34778 * 120.00301 * 352.37152 * 10 9 8 13 13 C 1.46501 * 120.00036 * 185.32071 * 12 10 9 14 14 C 1.50704 * 109.46869 * 90.00379 * 13 12 10 15 15 H 1.07995 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00118 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99993 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47119 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47418 * 119.99752 * 18 16 14 21 21 H 1.48502 * 109.47020 * 240.00361 * 18 16 14 22 22 C 1.46496 * 119.99949 * 5.32770 * 12 10 9 23 23 C 1.53006 * 109.47133 * 89.80290 * 22 12 10 24 24 C 1.53000 * 109.46894 * 66.03178 * 23 22 12 25 25 C 1.53004 * 109.46944 * 186.03042 * 23 22 12 26 26 C 1.52999 * 109.47070 * 306.02858 * 23 22 12 27 27 N 1.32728 * 120.03685 * 359.49193 * 9 8 6 28 28 H 1.09007 * 109.46712 * 270.00160 * 1 2 3 29 29 H 1.08995 * 109.46872 * 29.99565 * 1 2 3 30 30 H 1.08994 * 109.47607 * 150.00280 * 1 2 3 31 31 H 1.09002 * 109.47637 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47436 * 300.00249 * 3 2 1 33 33 H 1.09007 * 109.47145 * 60.00173 * 3 2 1 34 34 H 0.96996 * 119.99769 * 359.97438 * 7 6 5 35 35 H 0.97004 * 119.99799 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47448 * 210.00313 * 13 12 10 37 37 H 1.09001 * 109.47330 * 330.01047 * 13 12 10 38 38 H 0.96997 * 120.00460 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47091 * 209.80216 * 22 12 10 40 40 H 1.08996 * 109.46876 * 329.80698 * 22 12 10 41 41 H 1.09001 * 109.47426 * 59.99822 * 24 23 22 42 42 H 1.09002 * 109.46819 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.46768 * 299.99400 * 24 23 22 44 44 H 1.08994 * 109.47320 * 59.99937 * 25 23 22 45 45 H 1.09000 * 109.46418 * 180.02562 * 25 23 22 46 46 H 1.09001 * 109.47025 * 299.99963 * 25 23 22 47 47 H 1.09005 * 109.47381 * 49.42191 * 26 23 22 48 48 H 1.08994 * 109.47022 * 169.41687 * 26 23 22 49 49 H 1.08997 * 109.47144 * 289.42033 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1551 -1.1954 0.0005 5 7 3.4837 -1.1956 0.0010 6 6 4.1469 -2.3464 0.0021 7 7 5.5272 -2.3477 0.0031 8 7 3.4806 -3.4980 0.0076 9 6 2.1536 -3.4969 0.0020 10 6 1.4088 -4.7856 0.0031 11 8 0.2019 -4.7892 0.1374 12 7 2.0739 -5.9484 -0.1453 13 6 1.3325 -7.2067 -0.2612 14 6 1.0354 -7.4826 -1.7127 15 1 1.3661 -6.7903 -2.4727 16 6 0.3422 -8.6196 -2.0704 17 7 -0.0592 -9.4634 -1.1451 18 14 -0.0254 -8.9620 -3.8695 19 1 0.5314 -7.8682 -4.7055 20 1 0.5957 -10.2516 -4.2650 21 1 -1.4951 -9.0387 -4.0686 22 6 3.5381 -5.9542 -0.1903 23 6 4.0915 -6.1092 1.2277 24 6 3.7201 -7.4901 1.7719 25 6 5.6144 -5.9648 1.1995 26 6 3.4932 -5.0277 2.1296 27 7 1.4901 -2.3474 0.0010 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5137 31 1 3.2692 1.0695 -0.0005 32 1 1.9343 1.8403 -0.8899 33 1 1.9343 1.8403 0.8901 34 1 6.0129 -1.5081 0.0028 35 1 6.0115 -3.1882 0.0035 36 1 1.9312 -8.0203 0.1481 37 1 0.3969 -7.1295 0.2927 38 1 -0.5472 -10.2631 -1.3966 39 1 3.8794 -6.7861 -0.8064 40 1 3.8921 -5.0162 -0.6179 41 1 4.1462 -8.2606 1.1294 42 1 4.1139 -7.6004 2.7823 43 1 2.6351 -7.5929 1.7920 44 1 5.8790 -4.9812 0.8118 45 1 6.0085 -6.0757 2.2097 46 1 6.0406 -6.7353 0.5570 47 1 2.4105 -5.0085 2.0048 48 1 3.7352 -5.2471 3.1695 49 1 3.9077 -4.0572 1.8571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593894595.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:57 Heat of formation + Delta-G solvation = 81.460337 kcal Electronic energy + Delta-G solvation = -31428.580596 eV Core-core repulsion = 27428.359182 eV Total energy + Delta-G solvation = -4000.221414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63425 -39.22644 -37.42321 -36.89156 -35.28312 -33.86526 -33.11906 -32.25669 -31.54318 -28.40910 -27.92231 -26.98394 -26.74034 -26.47622 -25.52348 -24.73784 -22.59159 -22.19102 -19.64006 -19.04586 -18.69220 -17.47248 -16.61098 -16.31686 -16.14557 -16.11564 -15.63669 -15.17277 -15.06711 -14.63180 -14.50896 -14.42693 -13.99159 -13.66799 -13.54104 -13.13678 -12.68317 -12.65074 -12.38609 -12.31078 -12.16226 -11.99154 -11.93260 -11.86315 -11.38247 -11.26622 -11.15504 -10.95797 -10.73064 -10.62836 -10.41912 -10.29178 -10.18020 -10.09131 -9.69442 -9.49030 -9.10808 -9.01580 -8.62857 -8.38228 -8.28235 -7.53463 -6.00578 -4.04855 0.89931 1.44486 2.37882 3.03827 3.32877 3.35140 3.40822 3.45861 3.48055 4.18773 4.28642 4.45991 4.59912 4.82954 5.06339 5.17472 5.19787 5.27614 5.28819 5.33956 5.44981 5.51955 5.56403 5.71144 5.87379 5.93317 5.95853 6.02782 6.13599 6.20899 6.26555 6.29073 6.40501 6.42795 6.48321 6.60896 6.70546 6.76763 6.84061 6.90387 7.09250 7.18452 7.22610 7.47116 7.54840 7.62218 7.96115 8.26711 8.37038 8.57642 8.89538 9.06008 9.59693 11.07230 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004339 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.437576 B = 6451.122203 C = 7945.029542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.581 5.581 3 C 0.096 3.904 4 C 0.622 3.378 5 N -0.652 5.652 6 C 0.616 3.384 7 N -0.809 5.809 8 N -0.591 5.591 9 C 0.413 3.587 10 C 0.570 3.430 11 O -0.506 6.506 12 N -0.562 5.562 13 C 0.241 3.759 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.091 3.909 23 C -0.070 4.070 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.134 4.134 27 N -0.587 5.587 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.413 0.587 35 H 0.416 0.584 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.069 0.931 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.038 0.962 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 17.701 4.659 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.298 5.298 3 C -0.047 4.047 4 C 0.258 3.742 5 N -0.393 5.393 6 C 0.250 3.750 7 N -0.360 5.360 8 N -0.329 5.329 9 C 0.132 3.868 10 C 0.351 3.649 11 O -0.379 6.379 12 N -0.292 5.292 13 C 0.123 3.877 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.033 4.033 23 C -0.071 4.071 24 C -0.203 4.203 25 C -0.184 4.184 26 C -0.192 4.192 27 N -0.321 5.321 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.249 0.751 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.144 0.856 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.808 17.690 4.754 21.794 hybrid contribution 0.244 -0.187 -0.949 0.997 sum 12.052 17.502 3.805 21.588 Atomic orbital electron populations 1.21728 0.76790 1.03690 1.02249 1.45856 1.06264 1.01704 1.75979 1.21724 0.98841 0.83178 1.00985 1.18922 0.84164 0.86575 0.84521 1.67733 1.08352 1.30091 1.33078 1.19306 0.87466 0.84420 0.83829 1.41728 1.00714 1.12641 1.80877 1.69389 1.09397 1.25923 1.28204 1.23463 0.85429 0.93563 0.84329 1.17211 0.86163 0.81427 0.80089 1.90774 1.12812 1.85425 1.48876 1.48039 1.07050 1.06993 1.67105 1.19544 0.92495 0.78268 0.97425 1.21479 1.35980 1.06653 0.92373 0.92387 1.24900 0.95435 0.95941 0.97658 1.69936 1.38503 1.12244 1.32533 0.86464 0.78141 0.77956 0.84991 1.19843 1.21000 1.20895 1.22520 0.79825 1.05389 0.95521 1.20712 0.94721 0.95182 0.96495 1.22029 1.02823 0.95961 0.99468 1.21713 0.95020 1.00774 1.00935 1.22089 1.00577 0.98887 0.97617 1.68492 1.40199 0.97108 1.26271 0.92605 0.91187 0.89275 0.88874 0.92336 0.92377 0.75550 0.75071 0.93550 0.93769 0.92794 0.91247 0.85552 0.92682 0.93915 0.91486 0.93352 0.93283 0.92761 0.93408 0.94313 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.50 59.85 0.63 1.70 16 2 N -0.58 -7.21 3.36 -191.77 -0.64 -7.85 16 3 C 0.10 0.82 10.71 59.84 0.64 1.46 16 4 C 0.62 9.77 8.19 -322.20 -2.64 7.13 16 5 N -0.65 -9.16 9.01 -14.78 -0.13 -9.29 16 6 C 0.62 8.24 8.32 -322.20 -2.68 5.56 16 7 N -0.81 -6.84 9.05 29.84 0.27 -6.57 16 8 N -0.59 -9.27 3.33 -11.88 -0.04 -9.31 16 9 C 0.41 7.97 6.52 -156.49 -1.02 6.95 16 10 C 0.57 13.03 5.81 -11.87 -0.07 12.96 16 11 O -0.51 -13.47 16.46 5.42 0.09 -13.38 16 12 N -0.56 -12.35 1.98 -175.80 -0.35 -12.70 16 13 C 0.24 6.28 4.31 -5.19 -0.02 6.26 16 14 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.09 1.61 4.39 -4.04 -0.02 1.59 16 23 C -0.07 -1.05 0.77 -154.50 -0.12 -1.17 16 24 C -0.15 -2.35 7.50 37.16 0.28 -2.07 16 25 C -0.13 -1.44 8.45 37.16 0.31 -1.12 16 26 C -0.13 -2.11 6.97 37.16 0.26 -1.85 16 27 N -0.59 -11.02 9.01 -11.88 -0.11 -11.13 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.09 1.20 7.36 -51.93 -0.38 0.82 16 31 H 0.09 0.85 6.80 -51.93 -0.35 0.49 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.41 2.53 8.95 -40.82 -0.37 2.17 16 35 H 0.42 2.95 7.33 -40.82 -0.30 2.65 16 36 H 0.05 1.20 5.98 -51.93 -0.31 0.89 16 37 H 0.04 1.30 7.35 -51.93 -0.38 0.92 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.13 2.11 4.55 -72.23 -0.33 1.78 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.28 5.89 -51.93 -0.31 0.97 16 44 H 0.05 0.47 6.52 -51.93 -0.34 0.13 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.90 5.33 -51.93 -0.28 0.63 16 48 H 0.04 0.56 8.11 -51.93 -0.42 0.14 16 49 H 0.06 0.91 5.38 -51.93 -0.28 0.63 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -34.38 382.45 -11.69 -46.07 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.39 Total: 3.25 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: -4.87 Total: 23.83 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -0.27 Total: -82.50 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.38 -11.69 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593894595.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.527 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds