Wall clock time and date at job start Tue Mar 31 2020 19:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00320 * 2 1 4 4 C 1.38030 * 119.99723 * 179.97438 * 2 1 3 5 5 N 1.32863 * 120.00613 * 180.02562 * 4 2 1 6 6 C 1.32825 * 119.96369 * 179.97438 * 5 4 2 7 7 N 1.38030 * 120.00584 * 180.02562 * 6 5 4 8 8 N 1.33050 * 119.98786 * 359.74938 * 6 5 4 9 9 C 1.32701 * 120.00941 * 0.50585 * 8 6 5 10 10 C 1.48835 * 119.97729 * 179.77068 * 9 8 6 11 11 O 1.21442 * 119.99865 * 172.38145 * 10 9 8 12 12 N 1.34778 * 120.00301 * 352.37152 * 10 9 8 13 13 C 1.46501 * 120.00036 * 185.32071 * 12 10 9 14 14 C 1.50704 * 109.46869 * 90.00379 * 13 12 10 15 15 H 1.07995 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00118 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99993 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47119 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47418 * 119.99752 * 18 16 14 21 21 H 1.48502 * 109.47020 * 240.00361 * 18 16 14 22 22 C 1.46496 * 119.99949 * 5.32770 * 12 10 9 23 23 C 1.53006 * 109.47133 * 89.80290 * 22 12 10 24 24 C 1.53000 * 109.46894 * 66.03178 * 23 22 12 25 25 C 1.53004 * 109.46944 * 186.03042 * 23 22 12 26 26 C 1.52999 * 109.47070 * 306.02858 * 23 22 12 27 27 N 1.32728 * 120.03685 * 359.49193 * 9 8 6 28 28 H 1.09007 * 109.46712 * 270.00160 * 1 2 3 29 29 H 1.08995 * 109.46872 * 29.99565 * 1 2 3 30 30 H 1.08994 * 109.47607 * 150.00280 * 1 2 3 31 31 H 1.09002 * 109.47637 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47436 * 300.00249 * 3 2 1 33 33 H 1.09007 * 109.47145 * 60.00173 * 3 2 1 34 34 H 0.96996 * 119.99769 * 359.97438 * 7 6 5 35 35 H 0.97004 * 119.99799 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47448 * 210.00313 * 13 12 10 37 37 H 1.09001 * 109.47330 * 330.01047 * 13 12 10 38 38 H 0.96997 * 120.00460 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47091 * 209.80216 * 22 12 10 40 40 H 1.08996 * 109.46876 * 329.80698 * 22 12 10 41 41 H 1.09001 * 109.47426 * 59.99822 * 24 23 22 42 42 H 1.09002 * 109.46819 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.46768 * 299.99400 * 24 23 22 44 44 H 1.08994 * 109.47320 * 59.99937 * 25 23 22 45 45 H 1.09000 * 109.46418 * 180.02562 * 25 23 22 46 46 H 1.09001 * 109.47025 * 299.99963 * 25 23 22 47 47 H 1.09005 * 109.47381 * 49.42191 * 26 23 22 48 48 H 1.08994 * 109.47022 * 169.41687 * 26 23 22 49 49 H 1.08997 * 109.47144 * 289.42033 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1551 -1.1954 0.0005 5 7 3.4837 -1.1956 0.0010 6 6 4.1469 -2.3464 0.0021 7 7 5.5272 -2.3477 0.0031 8 7 3.4806 -3.4980 0.0076 9 6 2.1536 -3.4969 0.0020 10 6 1.4088 -4.7856 0.0031 11 8 0.2019 -4.7892 0.1374 12 7 2.0739 -5.9484 -0.1453 13 6 1.3325 -7.2067 -0.2612 14 6 1.0354 -7.4826 -1.7127 15 1 1.3661 -6.7903 -2.4727 16 6 0.3422 -8.6196 -2.0704 17 7 -0.0592 -9.4634 -1.1451 18 14 -0.0254 -8.9620 -3.8695 19 1 0.5314 -7.8682 -4.7055 20 1 0.5957 -10.2516 -4.2650 21 1 -1.4951 -9.0387 -4.0686 22 6 3.5381 -5.9542 -0.1903 23 6 4.0915 -6.1092 1.2277 24 6 3.7201 -7.4901 1.7719 25 6 5.6144 -5.9648 1.1995 26 6 3.4932 -5.0277 2.1296 27 7 1.4901 -2.3474 0.0010 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5137 31 1 3.2692 1.0695 -0.0005 32 1 1.9343 1.8403 -0.8899 33 1 1.9343 1.8403 0.8901 34 1 6.0129 -1.5081 0.0028 35 1 6.0115 -3.1882 0.0035 36 1 1.9312 -8.0203 0.1481 37 1 0.3969 -7.1295 0.2927 38 1 -0.5472 -10.2631 -1.3966 39 1 3.8794 -6.7861 -0.8064 40 1 3.8921 -5.0162 -0.6179 41 1 4.1462 -8.2606 1.1294 42 1 4.1139 -7.6004 2.7823 43 1 2.6351 -7.5929 1.7920 44 1 5.8790 -4.9812 0.8118 45 1 6.0085 -6.0757 2.2097 46 1 6.0406 -6.7353 0.5570 47 1 2.4105 -5.0085 2.0048 48 1 3.7352 -5.2471 3.1695 49 1 3.9077 -4.0572 1.8571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593894595.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:56 Heat of formation + Delta-G solvation = 62.493119 kcal Electronic energy + Delta-G solvation = -31429.403076 eV Core-core repulsion = 27428.359182 eV Total energy + Delta-G solvation = -4001.043894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.88081 -40.81609 -38.64363 -38.19963 -36.39874 -35.70727 -34.50186 -34.00035 -32.66538 -30.00233 -29.08587 -28.21053 -28.05384 -27.63354 -26.84457 -26.36281 -24.29934 -23.33453 -21.13992 -20.25167 -19.96176 -18.78440 -18.60087 -17.59541 -17.42733 -17.37434 -16.86080 -16.68827 -16.43884 -16.19007 -15.70026 -15.52551 -15.42496 -15.02608 -14.91349 -14.55720 -14.34741 -14.12340 -13.54561 -13.39819 -13.20798 -13.18663 -13.08529 -12.99804 -12.93625 -12.83049 -12.62891 -12.56172 -12.44278 -12.17568 -12.03322 -11.79702 -11.61625 -11.55132 -11.47717 -11.23585 -10.61468 -10.50124 -10.01768 -9.94564 -9.36493 -9.26095 -8.20456 -6.34957 -0.47443 0.30870 1.33851 1.37141 1.39610 1.51334 1.79584 1.93606 2.06106 2.39493 2.91028 2.94899 3.09134 3.35162 3.64776 4.02523 4.05326 4.18061 4.19490 4.41617 4.51428 4.61508 4.67539 4.75157 4.75889 4.84784 4.85634 4.93217 4.97550 4.99616 5.05131 5.09437 5.14268 5.18135 5.24524 5.27350 5.41075 5.42208 5.45272 5.51903 5.63687 5.65310 5.87192 5.91273 6.04552 6.07802 6.21321 6.58901 6.72709 6.74845 7.15879 7.36336 7.46356 8.86658 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004339 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.437576 B = 6451.122203 C = 7945.029542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.577 5.577 3 C 0.092 3.908 4 C 0.607 3.393 5 N -0.639 5.639 6 C 0.610 3.390 7 N -0.776 5.776 8 N -0.587 5.587 9 C 0.406 3.594 10 C 0.564 3.436 11 O -0.563 6.563 12 N -0.561 5.561 13 C 0.261 3.739 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.966 3.034 19 H -0.270 1.270 20 H -0.267 1.267 21 H -0.281 1.281 22 C 0.088 3.912 23 C -0.065 4.065 24 C -0.143 4.143 25 C -0.119 4.119 26 C -0.124 4.124 27 N -0.619 5.619 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.429 0.571 35 H 0.427 0.573 36 H 0.044 0.956 37 H -0.003 1.003 38 H 0.268 0.732 39 H 0.061 0.939 40 H 0.144 0.856 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.025 0.975 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.006 0.994 48 H 0.051 0.949 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.942 19.883 3.970 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.293 5.293 3 C -0.049 4.049 4 C 0.243 3.757 5 N -0.381 5.381 6 C 0.243 3.757 7 N -0.329 5.329 8 N -0.326 5.326 9 C 0.123 3.877 10 C 0.347 3.653 11 O -0.440 6.440 12 N -0.290 5.290 13 C 0.140 3.860 14 C -0.584 4.584 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.192 1.192 21 H -0.207 1.207 22 C -0.034 4.034 23 C -0.066 4.066 24 C -0.200 4.200 25 C -0.177 4.177 26 C -0.181 4.181 27 N -0.355 5.355 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.264 0.736 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.025 0.975 48 H 0.070 0.930 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.120 19.939 4.071 25.353 hybrid contribution -0.722 -0.759 -0.669 1.243 sum 14.399 19.180 3.401 24.223 Atomic orbital electron populations 1.21798 0.76286 1.03900 1.02561 1.46280 1.06914 1.01811 1.74290 1.21981 0.98264 0.81585 1.03055 1.19273 0.84922 0.86706 0.84759 1.67897 1.07351 1.29710 1.33143 1.19619 0.88957 0.83629 0.83518 1.41686 0.98523 1.14249 1.78440 1.69137 1.07658 1.27218 1.28624 1.22407 0.86508 0.92062 0.86685 1.17716 0.85871 0.82862 0.78816 1.90713 1.15305 1.86614 1.51358 1.47986 1.08740 1.05680 1.66558 1.19013 0.90972 0.80177 0.95807 1.21706 1.36688 1.06895 0.93076 0.93196 1.25782 0.94908 0.95568 1.02384 1.70049 1.38836 1.12699 1.34762 0.85397 0.77912 0.78386 0.79274 1.19448 1.19177 1.20676 1.22848 0.77034 1.05887 0.97593 1.20711 0.97580 0.94104 0.94226 1.21989 1.00113 0.96930 1.00980 1.21663 0.91146 1.02415 1.02473 1.21997 0.97920 0.99633 0.98582 1.68362 1.41504 0.97958 1.27686 0.92271 0.87445 0.92504 0.89240 0.90175 0.90271 0.73620 0.73792 0.93801 0.98522 0.92343 0.92016 0.83962 0.92704 0.91675 0.95589 0.91221 0.91599 0.91892 0.97458 0.92990 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 10.50 127.77 1.34 3.38 16 2 N -0.58 -13.45 3.36 -760.62 -2.56 -16.01 16 3 C 0.09 1.30 10.71 127.77 1.37 2.67 16 4 C 0.61 18.68 8.19 261.27 2.14 20.82 16 5 N -0.64 -16.68 9.01 -200.66 -1.81 -18.49 16 6 C 0.61 14.90 8.32 261.28 2.17 17.07 16 7 N -0.78 -10.12 9.05 -59.49 -0.54 -10.66 16 8 N -0.59 -17.97 3.33 -191.49 -0.64 -18.60 16 9 C 0.41 16.17 6.52 137.62 0.90 17.06 16 10 C 0.56 27.63 5.81 87.08 0.51 28.13 16 11 O -0.56 -32.71 16.46 -3.53 -0.06 -32.77 16 12 N -0.56 -26.24 1.98 -828.43 -1.64 -27.87 16 13 C 0.26 14.61 4.31 85.63 0.37 14.98 16 14 C -0.55 -32.44 9.39 25.60 0.24 -32.20 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.76 5.46 84.66 0.46 1.22 16 17 N -0.92 -56.47 13.29 21.45 0.28 -56.18 16 18 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C 0.09 3.16 4.39 86.38 0.38 3.54 16 23 C -0.07 -1.91 0.77 -52.18 -0.04 -1.95 16 24 C -0.14 -4.67 7.50 71.98 0.54 -4.13 16 25 C -0.12 -2.30 8.45 71.98 0.61 -1.70 16 26 C -0.12 -3.86 6.97 71.98 0.50 -3.36 16 27 N -0.62 -24.01 9.01 -191.49 -1.73 -25.74 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 30 H 0.06 1.59 7.36 -2.39 -0.02 1.58 16 31 H 0.09 1.35 6.80 -2.39 -0.02 1.34 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.43 3.36 8.95 -92.71 -0.83 2.53 16 35 H 0.43 4.11 7.33 -92.71 -0.68 3.43 16 36 H 0.04 2.45 5.98 -2.39 -0.01 2.43 16 37 H 0.00 -0.22 7.35 -2.39 -0.02 -0.23 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 40 H 0.14 4.65 4.55 -42.47 -0.19 4.45 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.02 1.04 5.89 -2.39 -0.01 1.02 16 44 H 0.07 1.04 6.52 -2.39 -0.02 1.02 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.01 0.26 5.33 -2.38 -0.01 0.25 16 48 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16 49 H 0.07 2.01 5.38 -2.39 -0.01 2.00 16 Total: -1.00 -81.67 382.45 4.15 -77.52 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.69 Total: 15.32 kcal Atomic # 6 Polarization: 54.06 SS G_CDS: 11.49 Total: 65.55 kcal Atomic # 7 Polarization: -164.93 SS G_CDS: -8.62 Total: -173.55 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.06 Total: -32.77 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -81.67 4.15 -77.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593894595.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.016 kcal (2) G-P(sol) polarization free energy of solvation -81.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds