Wall clock time and date at job start Tue Mar 31 2020 20:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47258 * 2 1 4 4 C 1.52998 * 109.47373 * 239.99630 * 2 1 3 5 5 N 1.46499 * 109.47145 * 119.99940 * 2 1 3 6 6 N 1.28784 * 125.45333 * 240.00399 * 5 2 1 7 7 N 1.28988 * 108.72910 * 179.72807 * 6 5 2 8 8 C 1.33319 * 107.35378 * 0.42606 * 7 6 5 9 9 C 1.50706 * 126.54752 * 179.84006 * 8 7 6 10 10 N 1.46494 * 109.46863 * 269.68916 * 9 8 7 11 11 C 1.34779 * 119.99736 * 180.02562 * 10 9 8 12 12 O 1.21592 * 120.00111 * 5.06875 * 11 10 9 13 13 N 1.34774 * 119.99867 * 185.07135 * 11 10 9 14 14 C 1.46925 * 120.63404 * 354.96042 * 13 11 10 15 15 C 1.53188 * 108.89442 * 126.33992 * 14 13 11 16 16 C 1.53350 * 109.14976 * 54.58200 * 15 14 13 17 17 C 1.53040 * 109.60348 * 298.70833 * 16 15 14 18 18 H 1.08994 * 109.50096 * 301.42086 * 17 16 15 19 19 C 1.50702 * 109.49866 * 181.32428 * 17 16 15 20 20 H 1.08000 * 119.99677 * 0.16470 * 19 17 16 21 21 C 1.37873 * 120.00593 * 180.15967 * 19 17 16 22 22 N 1.31514 * 120.00464 * 180.02562 * 21 19 17 23 23 Si 1.86796 * 119.99732 * 0.02562 * 21 19 17 24 24 H 1.48504 * 109.47630 * 89.99695 * 23 21 19 25 25 H 1.48505 * 109.47538 * 209.99737 * 23 21 19 26 26 H 1.48505 * 109.47034 * 329.99696 * 23 21 19 27 27 C 1.46925 * 120.62866 * 174.97892 * 13 11 10 28 28 N 1.28884 * 125.44891 * 59.99849 * 5 2 1 29 29 H 1.08998 * 109.47579 * 300.00207 * 1 2 3 30 30 H 1.09003 * 109.47175 * 60.00549 * 1 2 3 31 31 H 1.09006 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46898 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46880 * 299.99360 * 3 2 1 34 34 H 1.08995 * 109.46999 * 60.00199 * 3 2 1 35 35 H 1.09001 * 109.47428 * 300.00311 * 4 2 1 36 36 H 1.09012 * 109.47179 * 60.00408 * 4 2 1 37 37 H 1.08997 * 109.47542 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.46757 * 149.68487 * 9 8 7 39 39 H 1.08995 * 109.47065 * 29.68980 * 9 8 7 40 40 H 0.96991 * 120.00272 * 359.97438 * 10 9 8 41 41 H 1.09000 * 109.58338 * 246.20397 * 14 13 11 42 42 H 1.09003 * 109.58342 * 6.48320 * 14 13 11 43 43 H 1.09005 * 109.49489 * 174.65811 * 15 14 13 44 44 H 1.09002 * 109.50067 * 294.75474 * 15 14 13 45 45 H 1.08997 * 109.41756 * 178.67577 * 16 15 14 46 46 H 1.08998 * 109.42514 * 58.74811 * 16 15 14 47 47 H 0.96999 * 120.00059 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.58931 * 353.37858 * 27 13 11 49 49 H 1.09003 * 109.58713 * 113.80262 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 7 2.7617 -0.1685 2.1090 7 7 2.9938 -1.0584 3.0133 8 6 2.3750 -2.1780 2.6376 9 6 2.3651 -3.4900 3.3790 10 7 3.4896 -4.3138 2.9286 11 6 3.6817 -5.5388 3.4570 12 8 2.8712 -5.9976 4.2387 13 7 4.7722 -6.2550 3.1189 14 6 5.7029 -5.7630 2.0941 15 6 7.1195 -5.7476 2.6769 16 6 7.4560 -7.1424 3.2181 17 6 6.4756 -7.5105 4.3340 18 1 6.5338 -6.7674 5.1293 19 6 6.8283 -8.8676 4.8862 20 1 7.6696 -9.4123 4.4836 21 6 6.0774 -9.4139 5.9053 22 7 6.3855 -10.5980 6.3874 23 14 4.6221 -8.4720 6.6011 24 1 3.3952 -8.8252 5.8425 25 1 4.4396 -8.8286 8.0311 26 1 4.8743 -7.0133 6.4830 27 6 5.0525 -7.5430 3.7679 28 7 1.7724 -1.9179 1.5034 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1299 -0.7209 -1.2494 38 1 1.4293 -4.0125 3.1803 39 1 2.4569 -3.3035 4.4489 40 1 4.0955 -3.9781 2.2497 41 1 5.6720 -6.4215 1.2260 42 1 5.4190 -4.7534 1.7971 43 1 7.8308 -5.4749 1.8972 44 1 7.1715 -5.0209 3.4877 45 1 8.4720 -7.1426 3.6127 46 1 7.3794 -7.8722 2.4121 47 1 5.8569 -10.9824 7.1041 48 1 4.3409 -7.7071 4.5771 49 1 4.9686 -8.3468 3.0363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595652674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:30 Heat of formation + Delta-G solvation = 105.924295 kcal Electronic energy + Delta-G solvation = -29752.303877 eV Core-core repulsion = 25753.143300 eV Total energy + Delta-G solvation = -3999.160577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.68937 -40.04034 -38.20333 -37.20401 -35.10895 -33.74161 -33.43151 -32.37745 -31.79551 -30.45613 -28.40893 -28.20609 -27.45031 -25.19072 -24.93567 -24.34282 -22.35599 -22.03163 -21.03273 -20.21310 -19.08717 -18.05706 -17.57736 -17.39110 -16.70882 -16.05327 -15.36999 -15.16900 -14.85800 -14.76143 -14.50501 -14.04612 -13.99841 -13.82194 -13.75103 -13.50396 -13.20394 -13.14289 -12.99062 -12.88436 -12.74330 -12.50237 -12.40512 -12.17045 -12.14403 -12.12603 -11.71073 -11.30633 -11.19762 -11.17932 -11.02104 -10.64127 -10.54177 -10.36835 -10.06423 -9.79903 -9.67895 -9.20718 -9.09399 -9.03733 -8.54327 -7.96221 -6.05870 -4.07516 0.92000 1.45802 1.72006 3.00801 3.43933 3.44797 3.52749 3.53008 3.64681 3.74947 3.87675 3.98190 4.14476 4.26038 4.48194 4.75505 4.78190 4.81349 4.94774 4.98058 5.01069 5.09021 5.10436 5.26779 5.29580 5.33688 5.36738 5.42759 5.44871 5.51941 5.54676 5.62979 5.80423 5.90038 5.99929 6.11993 6.18059 6.42542 6.43593 6.58146 6.62007 6.75649 6.88839 7.13377 7.30288 7.49424 7.77198 8.08656 8.22372 8.52162 8.89710 8.97027 9.55860 11.05952 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.002552 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.926826 B =10967.227496 C =11588.092005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.178 3.822 3 C -0.153 4.153 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.062 5.062 7 N -0.270 5.270 8 C 0.151 3.849 9 C 0.241 3.759 10 N -0.749 5.749 11 C 0.707 3.293 12 O -0.588 6.588 13 N -0.622 5.622 14 C 0.117 3.883 15 C -0.137 4.137 16 C -0.099 4.099 17 C 0.003 3.997 18 H 0.031 0.969 19 C -0.516 4.516 20 H 0.077 0.923 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.297 1.297 26 H -0.263 1.263 27 C 0.120 3.880 28 N -0.288 5.288 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.395 0.605 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.265 0.735 48 H 0.080 0.920 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.019 24.840 -18.551 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.097 3.903 3 C -0.211 4.211 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.054 5.054 7 N -0.141 5.141 8 C -0.132 4.132 9 C 0.114 3.886 10 N -0.410 5.410 11 C 0.409 3.591 12 O -0.466 6.466 13 N -0.358 5.358 14 C -0.007 4.007 15 C -0.175 4.175 16 C -0.137 4.137 17 C -0.016 4.016 18 H 0.049 0.951 19 C -0.554 4.554 20 H 0.095 0.905 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.710 3.290 24 H -0.198 1.198 25 H -0.224 1.224 26 H -0.188 1.188 27 C -0.001 4.001 28 N -0.139 5.139 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.529 24.997 -17.965 32.533 hybrid contribution -0.648 0.160 0.160 0.687 sum -11.178 25.156 -17.805 32.784 Atomic orbital electron populations 1.22242 0.90755 1.04667 1.04098 1.21433 0.96229 0.93059 0.79573 1.22099 1.03231 0.91450 1.04340 1.22246 1.02497 1.02051 0.94987 1.50594 1.30132 1.05625 1.18081 1.78973 1.08630 1.22349 0.95448 1.75934 1.20101 0.98659 1.19418 1.25596 0.97438 0.98125 0.92015 1.19110 0.91381 0.81162 0.96977 1.45118 1.32351 1.16901 1.46583 1.15782 0.82369 0.80005 0.80948 1.90922 1.45434 1.70681 1.39562 1.47646 1.23108 1.23190 1.41856 1.21547 0.90338 0.97944 0.90885 1.22050 0.95004 1.00050 1.00416 1.21477 0.99922 0.93549 0.98710 1.19514 0.89890 0.98294 0.93931 0.95109 1.20942 1.15475 1.00736 1.18217 0.90491 1.25046 0.97305 0.94655 0.96004 1.69892 1.40085 1.16232 1.27202 0.86973 0.83174 0.81269 0.77578 1.19759 1.22417 1.18805 1.22531 1.00019 0.80737 0.96830 1.74651 1.23222 0.99424 1.16596 0.91360 0.89085 0.90309 0.90527 0.89181 0.90572 0.90300 0.89083 0.91310 0.88608 0.88365 0.76899 0.91487 0.92039 0.91728 0.91925 0.92225 0.92505 0.92539 0.90219 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 8.66 37.15 0.32 -0.36 16 2 C 0.18 0.99 1.30 -131.82 -0.17 0.82 16 3 C -0.15 -0.61 7.91 37.16 0.29 -0.31 16 4 C -0.16 -0.69 8.66 37.16 0.32 -0.37 16 5 N -0.13 -1.26 3.73 0.48 0.00 -1.26 16 6 N -0.06 -0.72 12.24 60.35 0.74 0.02 16 7 N -0.27 -3.64 12.50 32.45 0.41 -3.23 16 8 C 0.15 1.89 7.74 -156.62 -1.21 0.68 16 9 C 0.24 3.21 6.30 -5.19 -0.03 3.18 16 10 N -0.75 -11.05 5.46 -66.41 -0.36 -11.41 16 11 C 0.71 13.69 8.30 -86.92 -0.72 12.97 16 12 O -0.59 -13.75 15.79 5.28 0.08 -13.67 16 13 N -0.62 -11.86 2.97 -178.50 -0.53 -12.39 16 14 C 0.12 1.68 6.42 -3.71 -0.02 1.66 16 15 C -0.14 -2.05 6.11 -26.45 -0.16 -2.21 16 16 C -0.10 -1.87 5.11 -26.53 -0.14 -2.01 16 17 C 0.00 0.08 1.84 -91.65 -0.17 -0.09 16 18 H 0.03 0.78 7.21 -51.93 -0.37 0.40 16 19 C -0.52 -14.42 9.15 -34.44 -0.31 -14.73 16 20 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 21 C 0.07 2.13 5.45 -17.82 -0.10 2.04 16 22 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 23 Si 0.88 23.65 24.31 -169.99 -4.13 19.52 16 24 H -0.27 -7.37 6.92 56.52 0.39 -6.98 16 25 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 26 H -0.26 -7.10 6.53 56.52 0.37 -6.73 16 27 C 0.12 2.74 5.09 -3.71 -0.02 2.72 16 28 N -0.29 -3.25 11.83 32.47 0.38 -2.87 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.16 8.14 -51.92 -0.42 -0.27 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.39 5.02 5.92 -40.82 -0.24 4.78 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.72 5.56 -51.93 -0.29 0.43 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 48 H 0.08 2.06 2.35 -51.93 -0.12 1.93 16 49 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -35.73 387.13 -6.74 -42.47 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.81 Total: -0.06 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.12 Total: 3.99 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 1.41 Total: -58.08 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.13 Total: 19.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.73 -6.74 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.391 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds