Wall clock time and date at job start Tue Mar 31 2020 20:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47258 * 2 1 4 4 C 1.52998 * 109.47373 * 239.99630 * 2 1 3 5 5 N 1.46499 * 109.47145 * 119.99940 * 2 1 3 6 6 N 1.28784 * 125.45333 * 240.00399 * 5 2 1 7 7 N 1.28988 * 108.72910 * 179.72807 * 6 5 2 8 8 C 1.33319 * 107.35378 * 0.42606 * 7 6 5 9 9 C 1.50706 * 126.54752 * 179.84006 * 8 7 6 10 10 N 1.46494 * 109.46863 * 269.68916 * 9 8 7 11 11 C 1.34779 * 119.99736 * 180.02562 * 10 9 8 12 12 O 1.21592 * 120.00111 * 5.06875 * 11 10 9 13 13 N 1.34774 * 119.99867 * 185.07135 * 11 10 9 14 14 C 1.46925 * 120.63404 * 354.96042 * 13 11 10 15 15 C 1.53188 * 108.89442 * 126.33992 * 14 13 11 16 16 C 1.53350 * 109.14976 * 54.58200 * 15 14 13 17 17 C 1.53040 * 109.60348 * 298.70833 * 16 15 14 18 18 H 1.08994 * 109.50096 * 301.42086 * 17 16 15 19 19 C 1.50702 * 109.49866 * 181.32428 * 17 16 15 20 20 H 1.08000 * 119.99677 * 0.16470 * 19 17 16 21 21 C 1.37873 * 120.00593 * 180.15967 * 19 17 16 22 22 N 1.31514 * 120.00464 * 180.02562 * 21 19 17 23 23 Si 1.86796 * 119.99732 * 0.02562 * 21 19 17 24 24 H 1.48504 * 109.47630 * 89.99695 * 23 21 19 25 25 H 1.48505 * 109.47538 * 209.99737 * 23 21 19 26 26 H 1.48505 * 109.47034 * 329.99696 * 23 21 19 27 27 C 1.46925 * 120.62866 * 174.97892 * 13 11 10 28 28 N 1.28884 * 125.44891 * 59.99849 * 5 2 1 29 29 H 1.08998 * 109.47579 * 300.00207 * 1 2 3 30 30 H 1.09003 * 109.47175 * 60.00549 * 1 2 3 31 31 H 1.09006 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46898 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46880 * 299.99360 * 3 2 1 34 34 H 1.08995 * 109.46999 * 60.00199 * 3 2 1 35 35 H 1.09001 * 109.47428 * 300.00311 * 4 2 1 36 36 H 1.09012 * 109.47179 * 60.00408 * 4 2 1 37 37 H 1.08997 * 109.47542 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.46757 * 149.68487 * 9 8 7 39 39 H 1.08995 * 109.47065 * 29.68980 * 9 8 7 40 40 H 0.96991 * 120.00272 * 359.97438 * 10 9 8 41 41 H 1.09000 * 109.58338 * 246.20397 * 14 13 11 42 42 H 1.09003 * 109.58342 * 6.48320 * 14 13 11 43 43 H 1.09005 * 109.49489 * 174.65811 * 15 14 13 44 44 H 1.09002 * 109.50067 * 294.75474 * 15 14 13 45 45 H 1.08997 * 109.41756 * 178.67577 * 16 15 14 46 46 H 1.08998 * 109.42514 * 58.74811 * 16 15 14 47 47 H 0.96999 * 120.00059 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.58931 * 353.37858 * 27 13 11 49 49 H 1.09003 * 109.58713 * 113.80262 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 7 2.7617 -0.1685 2.1090 7 7 2.9938 -1.0584 3.0133 8 6 2.3750 -2.1780 2.6376 9 6 2.3651 -3.4900 3.3790 10 7 3.4896 -4.3138 2.9286 11 6 3.6817 -5.5388 3.4570 12 8 2.8712 -5.9976 4.2387 13 7 4.7722 -6.2550 3.1189 14 6 5.7029 -5.7630 2.0941 15 6 7.1195 -5.7476 2.6769 16 6 7.4560 -7.1424 3.2181 17 6 6.4756 -7.5105 4.3340 18 1 6.5338 -6.7674 5.1293 19 6 6.8283 -8.8676 4.8862 20 1 7.6696 -9.4123 4.4836 21 6 6.0774 -9.4139 5.9053 22 7 6.3855 -10.5980 6.3874 23 14 4.6221 -8.4720 6.6011 24 1 3.3952 -8.8252 5.8425 25 1 4.4396 -8.8286 8.0311 26 1 4.8743 -7.0133 6.4830 27 6 5.0525 -7.5430 3.7679 28 7 1.7724 -1.9179 1.5034 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1299 -0.7209 -1.2494 38 1 1.4293 -4.0125 3.1803 39 1 2.4569 -3.3035 4.4489 40 1 4.0955 -3.9781 2.2497 41 1 5.6720 -6.4215 1.2260 42 1 5.4190 -4.7534 1.7971 43 1 7.8308 -5.4749 1.8972 44 1 7.1715 -5.0209 3.4877 45 1 8.4720 -7.1426 3.6127 46 1 7.3794 -7.8722 2.4121 47 1 5.8569 -10.9824 7.1041 48 1 4.3409 -7.7071 4.5771 49 1 4.9686 -8.3468 3.0363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595652674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:29 Heat of formation + Delta-G solvation = 79.845375 kcal Electronic energy + Delta-G solvation = -29753.434744 eV Core-core repulsion = 25753.143300 eV Total energy + Delta-G solvation = -4000.291444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.55104 -41.52218 -38.89617 -38.57809 -36.38968 -35.30418 -34.56806 -33.80072 -33.10148 -32.16289 -29.13483 -28.51776 -28.23127 -26.99292 -25.98257 -25.64007 -23.59637 -23.33724 -21.78383 -21.67788 -20.60749 -19.43852 -18.87686 -18.42823 -17.97729 -17.41776 -16.81237 -16.66275 -15.96928 -15.51088 -15.42517 -15.35372 -15.24730 -15.11854 -14.90412 -14.83260 -14.57175 -14.32189 -13.99752 -13.79092 -13.58449 -13.46275 -13.22804 -13.13972 -12.98547 -12.91162 -12.83952 -12.59636 -12.30993 -12.20912 -12.13622 -12.02764 -12.01138 -11.88111 -11.58951 -11.51492 -11.27354 -11.05107 -10.99134 -10.77986 -10.41663 -9.48482 -8.36936 -6.38604 0.07682 0.69298 0.84370 1.26656 1.33048 1.44971 1.68297 2.04037 2.23866 2.56578 2.87577 3.01045 3.03627 3.51316 3.54144 3.65115 3.92515 4.00797 4.12013 4.14681 4.35001 4.43080 4.43750 4.49134 4.49646 4.52811 4.53261 4.61310 4.61566 4.68559 4.69584 4.72782 4.73777 4.85745 4.98167 5.03233 5.10429 5.12128 5.18400 5.20473 5.22277 5.27132 5.39030 5.53011 5.61978 5.69316 5.87257 6.28502 6.69772 6.86251 7.20261 7.27159 7.41854 8.78932 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.002552 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.926826 B =10967.227496 C =11588.092005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 C -0.150 4.150 4 C -0.156 4.156 5 N -0.114 5.114 6 N -0.069 5.069 7 N -0.297 5.297 8 C 0.146 3.854 9 C 0.244 3.756 10 N -0.728 5.728 11 C 0.704 3.296 12 O -0.634 6.634 13 N -0.625 5.625 14 C 0.111 3.889 15 C -0.127 4.127 16 C -0.096 4.096 17 C 0.003 3.997 18 H 0.013 0.987 19 C -0.509 4.509 20 H 0.052 0.948 21 C 0.029 3.971 22 N -0.937 5.937 23 Si 0.937 3.063 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.269 1.269 27 C 0.127 3.873 28 N -0.288 5.288 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.407 0.593 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.267 0.733 48 H 0.049 0.951 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 27.865 -21.734 36.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.083 3.917 3 C -0.208 4.208 4 C -0.214 4.214 5 N -0.030 5.030 6 N -0.061 5.061 7 N -0.167 5.167 8 C -0.137 4.137 9 C 0.117 3.883 10 N -0.389 5.389 11 C 0.406 3.594 12 O -0.515 6.515 13 N -0.361 5.361 14 C -0.011 4.011 15 C -0.165 4.165 16 C -0.134 4.134 17 C -0.017 4.017 18 H 0.031 0.969 19 C -0.548 4.548 20 H 0.070 0.930 21 C -0.170 4.170 22 N -0.577 5.577 23 Si 0.767 3.233 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.194 1.194 27 C 0.004 3.996 28 N -0.140 5.140 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.246 0.754 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.968 28.089 -21.193 36.857 hybrid contribution -0.502 -0.695 1.004 1.320 sum -11.470 27.395 -20.189 35.912 Atomic orbital electron populations 1.22281 0.89534 1.04268 1.05365 1.22071 0.97218 0.93820 0.78573 1.22155 1.02711 0.90392 1.05578 1.22280 1.02048 1.01639 0.95432 1.51144 1.28554 1.05067 1.18259 1.78918 1.09255 1.22154 0.95764 1.75902 1.21187 0.99158 1.20488 1.25308 0.98205 0.97649 0.92503 1.19058 0.90900 0.81470 0.96858 1.44873 1.32685 1.15309 1.45999 1.15914 0.81981 0.80909 0.80642 1.90889 1.47076 1.71924 1.41637 1.47542 1.24007 1.22044 1.42495 1.21905 0.88943 1.00184 0.90041 1.21997 0.96294 0.96832 1.01396 1.21411 0.98286 0.96511 0.97208 1.19446 0.91965 0.95097 0.95159 0.96862 1.21294 1.13914 1.02230 1.17349 0.92978 1.25613 0.99325 0.95221 0.96828 1.69982 1.41589 1.17690 1.28457 0.86074 0.80668 0.79801 0.76759 1.20611 1.22242 1.19380 1.22032 0.98325 0.82934 0.96276 1.74630 1.22960 1.00275 1.16105 0.92222 0.85704 0.91509 0.91362 0.85775 0.91497 0.91496 0.85768 0.92002 0.88261 0.88969 0.75421 0.89395 0.88677 0.87446 0.92554 0.92532 0.91963 0.92382 0.93258 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.66 71.98 0.62 -0.29 16 2 C 0.16 1.39 1.30 3.60 0.00 1.40 16 3 C -0.15 -0.77 7.91 71.98 0.57 -0.20 16 4 C -0.16 -0.88 8.66 71.98 0.62 -0.25 16 5 N -0.11 -2.02 3.73 -152.40 -0.57 -2.59 16 6 N -0.07 -1.53 12.24 37.02 0.45 -1.08 16 7 N -0.30 -7.72 12.50 -51.26 -0.64 -8.36 16 8 C 0.15 3.50 7.74 138.55 1.07 4.57 16 9 C 0.24 6.30 6.30 85.64 0.54 6.84 16 10 N -0.73 -20.26 5.46 -482.29 -2.63 -22.89 16 11 C 0.70 26.54 8.30 179.05 1.49 28.03 16 12 O -0.63 -29.78 15.79 -4.01 -0.06 -29.85 16 13 N -0.63 -22.84 2.97 -836.90 -2.49 -25.33 16 14 C 0.11 2.80 6.42 86.36 0.55 3.35 16 15 C -0.13 -3.34 6.11 30.77 0.19 -3.15 16 16 C -0.10 -3.48 5.11 30.73 0.16 -3.33 16 17 C 0.00 0.15 1.84 -11.46 -0.02 0.13 16 18 H 0.01 0.67 7.21 -2.39 -0.02 0.65 16 19 C -0.51 -29.06 9.15 25.60 0.23 -28.83 16 20 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 21 C 0.03 1.73 5.45 84.65 0.46 2.20 16 22 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 23 Si 0.94 50.85 24.31 68.60 1.67 52.52 16 24 H -0.28 -15.37 6.92 99.48 0.69 -14.68 16 25 H -0.29 -15.67 7.11 99.48 0.71 -14.97 16 26 H -0.27 -14.62 6.53 99.48 0.65 -13.97 16 27 C 0.13 5.79 5.09 86.36 0.44 6.23 16 28 N -0.29 -6.07 11.83 -51.20 -0.61 -6.67 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.12 -0.12 8.14 -2.38 -0.02 -0.14 16 37 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.41 9.19 5.92 -92.71 -0.55 8.64 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 1.79 5.56 -2.39 -0.01 1.77 16 43 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 48 H 0.05 2.57 2.35 -2.39 -0.01 2.56 16 49 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -81.00 387.13 2.69 -78.32 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.34 Total: 8.41 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.93 Total: 16.68 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.18 Total: -126.08 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.06 Total: -29.85 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.67 Total: 52.52 kcal Total: -81.00 2.69 -78.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.162 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds