Wall clock time and date at job start Tue Mar 31 2020 20:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 C 1.52998 * 109.46855 * 240.00306 * 2 1 3 5 5 N 1.46497 * 109.46991 * 120.00305 * 2 1 3 6 6 N 1.28775 * 125.45332 * 0.02562 * 5 2 1 7 7 N 1.28990 * 108.73091 * 179.73401 * 6 5 2 8 8 C 1.33316 * 107.35443 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54902 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46971 * 90.02894 * 9 8 7 11 11 C 1.34776 * 119.99883 * 179.97438 * 10 9 8 12 12 O 1.21593 * 120.00020 * 354.92720 * 11 10 9 13 13 N 1.34772 * 119.99886 * 174.91719 * 11 10 9 14 14 C 1.46921 * 120.63330 * 4.75241 * 13 11 10 15 15 C 1.52761 * 109.00871 * 233.58017 * 14 13 11 16 16 C 1.53033 * 109.38237 * 305.58326 * 15 14 13 17 17 C 1.53039 * 109.53841 * 61.24411 * 16 15 14 18 18 H 1.08997 * 109.50121 * 58.58192 * 17 16 15 19 19 C 1.50700 * 109.52486 * 178.66859 * 17 16 15 20 20 H 1.07993 * 120.00215 * 359.84674 * 19 17 16 21 21 C 1.37885 * 119.99995 * 179.85252 * 19 17 16 22 22 N 1.31519 * 119.99957 * 359.97438 * 21 19 17 23 23 Si 1.86792 * 120.00160 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47144 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47197 * 119.99716 * 23 21 19 26 26 H 1.48500 * 109.47600 * 240.00345 * 23 21 19 27 27 C 1.46928 * 120.62902 * 185.02410 * 13 11 10 28 28 N 1.28892 * 125.44727 * 179.71277 * 5 2 1 29 29 H 1.09000 * 109.46977 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.47156 * 59.99451 * 1 2 3 31 31 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46858 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47093 * 300.00031 * 3 2 1 34 34 H 1.09006 * 109.46838 * 60.00635 * 3 2 1 35 35 H 1.08998 * 109.46969 * 299.99744 * 4 2 1 36 36 H 1.08998 * 109.47494 * 59.99892 * 4 2 1 37 37 H 1.09005 * 109.46853 * 180.02562 * 4 2 1 38 38 H 1.09005 * 109.46587 * 210.02560 * 9 8 7 39 39 H 1.08998 * 109.47473 * 330.02297 * 9 8 7 40 40 H 0.96994 * 120.00020 * 359.97438 * 10 9 8 41 41 H 1.09004 * 109.58349 * 353.41353 * 14 13 11 42 42 H 1.08999 * 109.58990 * 113.83502 * 14 13 11 43 43 H 1.09001 * 109.56452 * 185.54932 * 15 14 13 44 44 H 1.08997 * 109.36040 * 65.49656 * 15 14 13 45 45 H 1.08998 * 109.46639 * 301.21790 * 16 15 14 46 46 H 1.09011 * 109.46139 * 181.26067 * 16 15 14 47 47 H 0.96997 * 119.99892 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58699 * 246.15958 * 27 13 11 49 49 H 1.08994 * 109.58760 * 6.58871 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2783 -1.2181 2.1085 7 7 2.0399 -1.7434 3.0073 8 6 3.3017 -1.5312 2.6327 9 6 4.5420 -1.9647 3.3709 10 7 4.9392 -3.2996 2.9163 11 6 6.0293 -3.8935 3.4413 12 8 6.7351 -3.2863 4.2234 13 7 6.3368 -5.1603 3.0996 14 6 5.5548 -5.8712 2.0789 15 6 5.0712 -7.1994 2.6581 16 6 6.2696 -7.9864 3.1932 17 6 6.9483 -7.1893 4.3095 18 1 6.2305 -6.9956 5.1065 19 6 8.1086 -7.9789 4.8584 20 1 8.3382 -8.9535 4.4538 21 6 8.8771 -7.4570 5.8773 22 7 8.5979 -6.2699 6.3698 23 14 10.3149 -8.4359 6.5583 24 1 10.4174 -9.7307 5.8383 25 1 11.5708 -7.6657 6.3718 26 1 10.1000 -8.6896 8.0056 27 6 7.4567 -5.8589 3.7449 28 7 3.2574 -0.8726 1.5007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 5.3482 -1.2584 3.1726 39 1 4.3372 -1.9913 4.4411 40 1 4.4178 -3.7559 2.2376 41 1 4.6957 -5.2659 1.7896 42 1 6.1801 -6.0621 1.2067 43 1 4.5745 -7.7780 1.8793 44 1 4.3710 -7.0057 3.4707 45 1 6.9811 -8.1585 2.3856 46 1 5.9288 -8.9442 3.5867 47 1 9.1383 -5.9029 7.0869 48 1 8.2403 -6.0489 3.0114 49 1 7.8521 -5.2456 4.5546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595652675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:35 Heat of formation + Delta-G solvation = 98.566968 kcal Electronic energy + Delta-G solvation = -29567.818570 eV Core-core repulsion = 25568.338955 eV Total energy + Delta-G solvation = -3999.479615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.58382 -39.70459 -38.11461 -36.91816 -34.86540 -33.63279 -33.35367 -32.25741 -31.60042 -29.73398 -28.31004 -28.14030 -27.28761 -25.02365 -24.82641 -24.13510 -22.25510 -21.75931 -20.93895 -20.12552 -18.90407 -17.74883 -17.46540 -17.28302 -16.22078 -15.77978 -15.11484 -14.92868 -14.72697 -14.60356 -14.49206 -14.07144 -13.73073 -13.64421 -13.57761 -13.37420 -13.08298 -12.94970 -12.88540 -12.59318 -12.51795 -12.43708 -12.19465 -12.06890 -11.96390 -11.87692 -11.62049 -11.09801 -11.07495 -10.96487 -10.87783 -10.50724 -10.44232 -10.33008 -10.19087 -9.84247 -9.44188 -9.06671 -8.91254 -8.80351 -8.37954 -7.61918 -5.94228 -4.02978 1.02032 1.55282 1.84869 3.25627 3.34810 3.42278 3.45177 3.56332 3.83465 3.88531 3.94584 4.05065 4.37016 4.40135 4.49702 4.82066 4.84490 4.88260 5.01170 5.04629 5.07329 5.22730 5.29995 5.35800 5.36462 5.45587 5.49352 5.53444 5.62105 5.66917 5.69165 5.75279 5.99717 6.00760 6.19612 6.35237 6.61433 6.67685 6.69891 6.84016 7.02579 7.08864 7.37407 7.51108 7.78428 7.97252 8.10601 8.19266 8.45362 8.57647 9.00715 9.24075 9.62388 11.10980 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.002286 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.452400 B =12243.249712 C =12738.212103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.159 4.159 4 C -0.159 4.159 5 N -0.132 5.132 6 N -0.063 5.063 7 N -0.270 5.270 8 C 0.154 3.846 9 C 0.242 3.758 10 N -0.753 5.753 11 C 0.707 3.293 12 O -0.580 6.580 13 N -0.620 5.620 14 C 0.117 3.883 15 C -0.134 4.134 16 C -0.109 4.109 17 C 0.038 3.962 18 H 0.029 0.971 19 C -0.520 4.520 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.129 3.871 28 N -0.289 5.289 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.392 0.608 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.263 0.737 48 H 0.040 0.960 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 13.960 -17.683 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.217 4.217 4 C -0.218 4.218 5 N -0.046 5.046 6 N -0.056 5.056 7 N -0.141 5.141 8 C -0.129 4.129 9 C 0.114 3.886 10 N -0.414 5.414 11 C 0.408 3.592 12 O -0.457 6.457 13 N -0.356 5.356 14 C -0.008 4.008 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.019 3.981 18 H 0.047 0.953 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.516 5.516 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.009 3.991 28 N -0.140 5.140 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.228 0.772 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.722 14.630 -17.077 28.023 hybrid contribution 0.878 -0.778 0.090 1.176 sum -15.844 13.853 -16.988 27.046 Atomic orbital electron populations 1.22093 0.90040 1.04673 1.04288 1.21409 0.96462 0.92777 0.79626 1.22241 1.03421 0.92039 1.04037 1.22243 1.03440 1.01107 0.94981 1.50573 1.01200 1.34720 1.18061 1.78960 1.21977 1.08973 0.95657 1.75934 1.00817 1.17837 1.19537 1.25665 0.95724 0.99548 0.91978 1.19091 0.87808 0.84740 0.96926 1.45171 1.30980 1.18460 1.46782 1.15788 0.80549 0.81886 0.80975 1.90936 1.51895 1.63860 1.38999 1.47766 1.35009 1.11162 1.41680 1.21396 0.94342 0.93769 0.91264 1.21877 0.99417 0.95801 1.00148 1.21610 0.95295 0.98375 0.99421 1.19005 0.95676 0.91111 0.92291 0.95273 1.21104 1.13362 1.03106 1.18294 0.92343 1.25063 0.97605 0.95009 0.96410 1.69901 1.39235 1.16015 1.26459 0.86546 0.82544 0.80136 0.78826 1.19847 1.20989 1.21048 1.22217 0.84535 0.95670 0.96699 1.74657 1.03152 1.19540 1.16681 0.90581 0.89245 0.90552 0.90306 0.89150 0.91373 0.91339 0.89140 0.90291 0.88784 0.88424 0.77230 0.92459 0.92116 0.92376 0.92093 0.93205 0.93048 0.92699 0.94191 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 7.91 37.16 0.29 -0.39 16 2 C 0.18 1.10 1.30 -131.82 -0.17 0.93 16 3 C -0.16 -0.76 8.67 37.16 0.32 -0.44 16 4 C -0.16 -0.78 8.66 37.16 0.32 -0.46 16 5 N -0.13 -1.37 3.73 0.48 0.00 -1.37 16 6 N -0.06 -0.79 12.24 60.35 0.74 -0.05 16 7 N -0.27 -3.87 12.50 32.45 0.41 -3.47 16 8 C 0.15 2.07 7.74 -156.63 -1.21 0.86 16 9 C 0.24 3.50 6.30 -5.19 -0.03 3.47 16 10 N -0.75 -12.10 5.46 -66.41 -0.36 -12.46 16 11 C 0.71 14.73 8.30 -86.92 -0.72 14.01 16 12 O -0.58 -14.53 15.79 5.28 0.08 -14.45 16 13 N -0.62 -12.78 2.98 -178.76 -0.53 -13.32 16 14 C 0.12 1.87 6.40 -3.94 -0.03 1.85 16 15 C -0.13 -2.22 6.06 -26.84 -0.16 -2.38 16 16 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 17 C 0.04 0.96 2.25 -91.65 -0.21 0.76 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.21 8.57 -34.44 -0.29 -14.50 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.73 5.30 -17.81 -0.09 1.64 16 22 N -0.88 -25.92 11.39 55.43 0.63 -25.29 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.13 3.19 5.39 -3.71 -0.02 3.17 16 28 N -0.29 -3.51 11.83 32.47 0.38 -3.12 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.39 5.55 5.92 -40.82 -0.24 5.31 16 41 H 0.06 0.77 5.57 -51.93 -0.29 0.48 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.12 3.57 5.15 -51.93 -0.27 3.30 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -33.94 393.96 -7.82 -41.77 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.95 Total: 3.21 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.14 Total: 6.16 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 1.27 Total: -59.08 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.94 -7.82 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.333 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds