Wall clock time and date at job start Tue Mar 31 2020 20:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 C 1.52998 * 109.46855 * 240.00306 * 2 1 3 5 5 N 1.46497 * 109.46991 * 120.00305 * 2 1 3 6 6 N 1.28775 * 125.45332 * 0.02562 * 5 2 1 7 7 N 1.28990 * 108.73091 * 179.73401 * 6 5 2 8 8 C 1.33316 * 107.35443 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54902 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46971 * 90.02894 * 9 8 7 11 11 C 1.34776 * 119.99883 * 179.97438 * 10 9 8 12 12 O 1.21593 * 120.00020 * 354.92720 * 11 10 9 13 13 N 1.34772 * 119.99886 * 174.91719 * 11 10 9 14 14 C 1.46921 * 120.63330 * 4.75241 * 13 11 10 15 15 C 1.52761 * 109.00871 * 233.58017 * 14 13 11 16 16 C 1.53033 * 109.38237 * 305.58326 * 15 14 13 17 17 C 1.53039 * 109.53841 * 61.24411 * 16 15 14 18 18 H 1.08997 * 109.50121 * 58.58192 * 17 16 15 19 19 C 1.50700 * 109.52486 * 178.66859 * 17 16 15 20 20 H 1.07993 * 120.00215 * 359.84674 * 19 17 16 21 21 C 1.37885 * 119.99995 * 179.85252 * 19 17 16 22 22 N 1.31519 * 119.99957 * 359.97438 * 21 19 17 23 23 Si 1.86792 * 120.00160 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47144 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47197 * 119.99716 * 23 21 19 26 26 H 1.48500 * 109.47600 * 240.00345 * 23 21 19 27 27 C 1.46928 * 120.62902 * 185.02410 * 13 11 10 28 28 N 1.28892 * 125.44727 * 179.71277 * 5 2 1 29 29 H 1.09000 * 109.46977 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.47156 * 59.99451 * 1 2 3 31 31 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46858 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47093 * 300.00031 * 3 2 1 34 34 H 1.09006 * 109.46838 * 60.00635 * 3 2 1 35 35 H 1.08998 * 109.46969 * 299.99744 * 4 2 1 36 36 H 1.08998 * 109.47494 * 59.99892 * 4 2 1 37 37 H 1.09005 * 109.46853 * 180.02562 * 4 2 1 38 38 H 1.09005 * 109.46587 * 210.02560 * 9 8 7 39 39 H 1.08998 * 109.47473 * 330.02297 * 9 8 7 40 40 H 0.96994 * 120.00020 * 359.97438 * 10 9 8 41 41 H 1.09004 * 109.58349 * 353.41353 * 14 13 11 42 42 H 1.08999 * 109.58990 * 113.83502 * 14 13 11 43 43 H 1.09001 * 109.56452 * 185.54932 * 15 14 13 44 44 H 1.08997 * 109.36040 * 65.49656 * 15 14 13 45 45 H 1.08998 * 109.46639 * 301.21790 * 16 15 14 46 46 H 1.09011 * 109.46139 * 181.26067 * 16 15 14 47 47 H 0.96997 * 119.99892 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58699 * 246.15958 * 27 13 11 49 49 H 1.08994 * 109.58760 * 6.58871 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 1.2783 -1.2181 2.1085 7 7 2.0399 -1.7434 3.0073 8 6 3.3017 -1.5312 2.6327 9 6 4.5420 -1.9647 3.3709 10 7 4.9392 -3.2996 2.9163 11 6 6.0293 -3.8935 3.4413 12 8 6.7351 -3.2863 4.2234 13 7 6.3368 -5.1603 3.0996 14 6 5.5548 -5.8712 2.0789 15 6 5.0712 -7.1994 2.6581 16 6 6.2696 -7.9864 3.1932 17 6 6.9483 -7.1893 4.3095 18 1 6.2305 -6.9956 5.1065 19 6 8.1086 -7.9789 4.8584 20 1 8.3382 -8.9535 4.4538 21 6 8.8771 -7.4570 5.8773 22 7 8.5979 -6.2699 6.3698 23 14 10.3149 -8.4359 6.5583 24 1 10.4174 -9.7307 5.8383 25 1 11.5708 -7.6657 6.3718 26 1 10.1000 -8.6896 8.0056 27 6 7.4567 -5.8589 3.7449 28 7 3.2574 -0.8726 1.5007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 5.3482 -1.2584 3.1726 39 1 4.3372 -1.9913 4.4411 40 1 4.4178 -3.7559 2.2376 41 1 4.6957 -5.2659 1.7896 42 1 6.1801 -6.0621 1.2067 43 1 4.5745 -7.7780 1.8793 44 1 4.3710 -7.0057 3.4707 45 1 6.9811 -8.1585 2.3856 46 1 5.9288 -8.9442 3.5867 47 1 9.1383 -5.9029 7.0869 48 1 8.2403 -6.0489 3.0114 49 1 7.8521 -5.2456 4.5546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595652675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:34 Heat of formation + Delta-G solvation = 75.336347 kcal Electronic energy + Delta-G solvation = -29568.825925 eV Core-core repulsion = 25568.338955 eV Total energy + Delta-G solvation = -4000.486970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.53141 -41.32644 -38.79915 -38.47850 -36.27751 -35.25826 -34.54343 -33.65309 -33.02129 -31.51786 -29.07621 -28.50506 -28.19701 -26.95272 -25.84007 -25.59693 -23.52204 -23.24202 -21.79264 -21.65470 -20.50616 -19.26274 -18.43422 -18.25971 -17.92602 -17.26658 -16.67683 -16.47847 -15.98108 -15.42667 -15.32051 -15.21933 -15.20311 -15.06674 -14.65585 -14.58749 -14.37403 -14.17801 -13.93498 -13.61568 -13.47809 -13.44587 -13.21383 -12.96442 -12.88973 -12.82714 -12.65961 -12.57858 -12.26556 -12.19858 -12.19131 -12.01143 -11.99448 -11.86643 -11.63041 -11.42439 -11.17279 -10.94974 -10.82239 -10.49987 -10.30711 -9.29757 -8.07647 -6.24605 0.09492 0.73290 0.86351 1.41903 1.43455 1.55426 1.82670 2.21063 2.44239 2.60575 3.00253 3.05854 3.21553 3.52646 3.55972 3.66513 3.99657 4.11674 4.15975 4.28813 4.37370 4.45206 4.51790 4.54251 4.54634 4.59885 4.62651 4.70230 4.72320 4.74004 4.74962 4.80566 4.85103 5.04443 5.10663 5.13359 5.23464 5.24934 5.26284 5.28985 5.29857 5.35273 5.58764 5.62878 5.88020 5.97238 6.12661 6.37757 6.88296 7.03120 7.22132 7.45071 7.60091 8.96027 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.002286 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.452400 B =12243.249712 C =12738.212103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.114 5.114 6 N -0.069 5.069 7 N -0.297 5.297 8 C 0.148 3.852 9 C 0.246 3.754 10 N -0.731 5.731 11 C 0.703 3.297 12 O -0.630 6.630 13 N -0.624 5.624 14 C 0.112 3.888 15 C -0.126 4.126 16 C -0.104 4.104 17 C 0.037 3.963 18 H -0.014 1.014 19 C -0.533 4.533 20 H 0.063 0.937 21 C 0.008 3.992 22 N -0.915 5.915 23 Si 0.958 3.042 24 H -0.260 1.260 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.143 3.857 28 N -0.288 5.288 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.404 0.596 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.259 0.741 48 H 0.037 0.963 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.211 13.859 -20.964 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.030 5.030 6 N -0.061 5.061 7 N -0.168 5.168 8 C -0.135 4.135 9 C 0.118 3.882 10 N -0.392 5.392 11 C 0.404 3.596 12 O -0.511 6.511 13 N -0.360 5.360 14 C -0.011 4.011 15 C -0.164 4.164 16 C -0.141 4.141 17 C 0.018 3.982 18 H 0.004 0.996 19 C -0.572 4.572 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.784 3.216 24 H -0.184 1.184 25 H -0.208 1.208 26 H -0.210 1.210 27 C 0.021 3.979 28 N -0.140 5.140 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.242 0.758 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.325 14.510 -20.412 31.032 hybrid contribution 1.261 -0.662 1.004 1.742 sum -17.065 13.848 -19.407 29.319 Atomic orbital electron populations 1.22153 0.88515 1.04526 1.05607 1.22084 0.97728 0.93384 0.78546 1.22283 1.02618 0.91129 1.05382 1.22281 1.02618 1.01028 0.95466 1.51149 1.00460 1.33180 1.18251 1.78900 1.21921 1.09338 0.95940 1.75902 1.01186 1.19049 1.20677 1.25302 0.95097 1.00546 0.92554 1.19011 0.88576 0.83847 0.96718 1.44891 1.29328 1.18837 1.46172 1.15945 0.81119 0.81911 0.80628 1.90898 1.53786 1.65151 1.41251 1.47659 1.34685 1.11290 1.42373 1.21736 0.95270 0.93665 0.90397 1.21833 0.97648 0.95950 1.00999 1.21497 0.96676 0.98094 0.97882 1.18936 0.94456 0.91964 0.92875 0.99611 1.21530 1.13924 1.03420 1.18319 0.91894 1.25912 1.00394 0.95850 0.96949 1.70100 1.40470 1.17776 1.26980 0.85504 0.79045 0.79087 0.78006 1.18410 1.20849 1.20965 1.21636 0.85791 0.95020 0.95480 1.74631 1.04110 1.19182 1.16082 0.91485 0.85699 0.91412 0.91555 0.85629 0.92213 0.92075 0.85666 0.91553 0.88470 0.89294 0.75764 0.89222 0.89940 0.87839 0.93337 0.92219 0.92937 0.93138 0.94490 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 7.91 71.98 0.57 -0.38 16 2 C 0.16 1.62 1.30 3.60 0.00 1.62 16 3 C -0.16 -1.11 8.67 71.98 0.62 -0.48 16 4 C -0.16 -1.09 8.66 71.98 0.62 -0.47 16 5 N -0.11 -2.23 3.73 -152.40 -0.57 -2.80 16 6 N -0.07 -1.67 12.24 37.02 0.45 -1.22 16 7 N -0.30 -8.47 12.50 -51.26 -0.64 -9.11 16 8 C 0.15 3.94 7.74 138.55 1.07 5.02 16 9 C 0.25 7.22 6.30 85.63 0.54 7.76 16 10 N -0.73 -23.36 5.46 -482.29 -2.63 -25.99 16 11 C 0.70 29.95 8.30 179.06 1.49 31.44 16 12 O -0.63 -33.18 15.79 -4.01 -0.06 -33.24 16 13 N -0.62 -25.89 2.98 -837.74 -2.49 -28.39 16 14 C 0.11 3.31 6.40 86.22 0.55 3.86 16 15 C -0.13 -3.84 6.06 30.53 0.19 -3.66 16 16 C -0.10 -4.06 5.11 30.62 0.16 -3.90 16 17 C 0.04 1.90 2.25 -11.46 -0.03 1.88 16 18 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 19 C -0.53 -29.71 8.57 25.60 0.22 -29.49 16 20 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 21 C 0.01 0.47 5.30 84.66 0.45 0.92 16 22 N -0.91 -56.51 11.39 21.45 0.24 -56.27 16 23 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 27 C 0.14 7.32 5.39 86.36 0.47 7.78 16 28 N -0.29 -6.73 11.83 -51.20 -0.61 -7.33 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 39 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.40 10.80 5.92 -92.71 -0.55 10.25 16 41 H 0.09 2.09 5.57 -2.38 -0.01 2.08 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.08 4.77 5.15 -2.39 -0.01 4.75 16 Total: -1.00 -79.10 393.96 3.04 -76.06 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.40 Total: 19.47 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.92 Total: 21.89 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -6.25 Total: -131.11 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.06 Total: -33.24 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -79.10 3.04 -76.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595652675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.397 kcal (2) G-P(sol) polarization free energy of solvation -79.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds