Wall clock time and date at job start Tue Mar 31 2020 19:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99752 * 2 1 4 4 H 1.09001 * 109.47627 * 4.24510 * 3 2 1 5 5 C 1.52997 * 109.47304 * 244.24029 * 3 2 1 6 6 N 1.46498 * 109.46859 * 63.19473 * 5 3 2 7 7 C 1.34787 * 120.00031 * 177.13460 * 6 5 3 8 8 O 1.21592 * 119.99469 * 359.71660 * 7 6 5 9 9 N 1.34768 * 119.99749 * 179.72477 * 7 6 5 10 10 C 1.40200 * 119.99831 * 179.97438 * 9 7 6 11 11 C 1.40398 * 125.97174 * 359.71981 * 10 9 7 12 12 C 1.35240 * 107.86960 * 179.82664 * 11 10 9 13 13 N 1.34958 * 107.85741 * 0.42510 * 12 11 10 14 14 C 1.46502 * 125.97894 * 179.70730 * 13 12 11 15 15 C 1.50709 * 109.47283 * 125.00064 * 14 13 12 16 16 H 1.07997 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99952 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99691 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47027 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46856 * 119.99745 * 19 17 15 22 22 H 1.48498 * 109.46701 * 239.99503 * 19 17 15 23 23 N 1.31205 * 125.97297 * 180.02562 * 10 9 7 24 24 C 1.53003 * 109.47127 * 124.24500 * 3 2 1 25 25 C 1.54263 * 110.03133 * 57.90409 * 24 3 2 26 26 C 1.54974 * 104.15773 * 217.13786 * 25 24 3 27 27 C 1.54885 * 102.77714 * 37.89013 * 26 25 24 28 28 C 1.53876 * 110.03056 * 300.68925 * 24 3 2 29 29 H 1.09002 * 109.47023 * 54.44114 * 1 2 3 30 30 H 1.09000 * 109.47170 * 174.43213 * 1 2 3 31 31 H 1.08992 * 109.47130 * 294.43524 * 1 2 3 32 32 H 1.08994 * 109.47246 * 303.19487 * 5 3 2 33 33 H 1.08999 * 109.47464 * 183.19079 * 5 3 2 34 34 H 0.96998 * 120.00332 * 356.85211 * 6 5 3 35 35 H 0.96998 * 120.00674 * 359.97438 * 9 7 6 36 36 H 1.08010 * 126.06433 * 359.97438 * 11 10 9 37 37 H 1.08006 * 126.07376 * 180.15632 * 12 11 10 38 38 H 1.09001 * 109.47623 * 245.00187 * 14 13 12 39 39 H 1.09000 * 109.47030 * 5.00674 * 14 13 12 40 40 H 0.97001 * 119.99680 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.01841 * 179.30008 * 24 3 2 42 42 H 1.08995 * 110.48708 * 335.78752 * 25 24 3 43 43 H 1.09005 * 110.48626 * 98.43574 * 25 24 3 44 44 H 1.09000 * 110.71770 * 279.57241 * 26 25 24 45 45 H 1.09004 * 110.91650 * 156.29923 * 26 25 24 46 46 H 1.08994 * 110.48758 * 203.39993 * 27 26 25 47 47 H 1.09001 * 110.59963 * 80.81322 * 27 26 25 48 48 H 1.09001 * 110.03470 * 238.57195 * 28 24 3 49 49 H 1.09004 * 110.03106 * 359.94738 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2218 2.0542 0.0761 5 6 2.7903 1.5164 -1.2991 6 7 1.8686 1.4621 -2.4365 7 6 2.3258 1.6805 -3.6855 8 8 3.5023 1.9277 -3.8676 9 7 1.4788 1.6251 -4.7323 10 6 1.9543 1.8527 -6.0315 11 6 3.2798 2.1526 -6.3838 12 6 3.3297 2.2962 -7.7276 13 7 2.0841 2.1052 -8.2107 14 6 1.6871 2.1756 -9.6192 15 6 1.0023 0.8921 -10.0129 16 1 0.8759 0.1028 -9.2867 17 6 0.5381 0.7252 -11.3003 18 7 0.6925 1.6862 -12.1847 19 14 -0.3114 -0.8654 -11.7880 20 1 -0.3592 -1.7796 -10.6189 21 1 -1.6939 -0.5691 -12.2422 22 1 0.4441 -1.5120 -12.8909 23 7 1.2371 1.8284 -7.1299 24 6 2.9592 1.4412 1.1925 25 6 4.0509 0.3533 1.1255 26 6 4.2739 -0.0514 2.6048 27 6 2.8416 -0.0046 3.1924 28 6 2.1908 1.2141 2.5061 29 1 -0.3633 0.5976 -0.8360 30 1 -0.3633 -1.0228 -0.0997 31 1 -0.3633 0.4251 0.9355 32 1 3.5418 0.7338 -1.4028 33 1 3.2803 2.4898 -1.2748 34 1 0.9300 1.2650 -2.2912 35 1 0.5403 1.4276 -4.5871 36 1 4.1125 2.2489 -5.7026 37 1 4.2092 2.5274 -8.3103 38 1 1.0023 3.0115 -9.7624 39 1 2.5718 2.3202 -10.2392 40 1 0.3662 1.5686 -13.0906 41 1 3.4173 2.4303 1.1940 42 1 3.7030 -0.5009 0.5447 43 1 4.9678 0.7588 0.6978 44 1 4.9214 0.6668 3.1076 45 1 4.6875 -1.0575 2.6749 46 1 2.8767 0.1393 4.2722 47 1 2.2966 -0.9163 2.9476 48 1 2.2766 2.0927 3.1456 49 1 1.1416 1.0081 2.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596749068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:08 Heat of formation + Delta-G solvation = -3.827348 kcal Electronic energy + Delta-G solvation = -28590.113544 eV Core-core repulsion = 24553.901027 eV Total energy + Delta-G solvation = -4036.212517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.73277 -40.05559 -39.20916 -37.10053 -34.99904 -34.49771 -33.31721 -31.59563 -30.67925 -29.25728 -29.09090 -27.42613 -26.89462 -26.26804 -23.35954 -22.73988 -21.65452 -20.88261 -20.47962 -20.01646 -19.69638 -18.06600 -17.04918 -16.82813 -16.55774 -16.40430 -16.02604 -15.47353 -15.34636 -15.16303 -14.66290 -14.51894 -14.25768 -14.03480 -13.90360 -13.57595 -13.44202 -13.07600 -12.75329 -12.54932 -12.30312 -12.18566 -11.88281 -11.72395 -11.58244 -11.36931 -11.32837 -11.03991 -11.00556 -10.89001 -10.87187 -10.83323 -10.39456 -10.24807 -10.09102 -9.90780 -9.64502 -9.45962 -9.20800 -8.62100 -8.06742 -7.38010 -6.22703 -4.27473 2.39953 2.69968 3.14899 3.23208 3.30486 3.30764 3.37331 3.61720 3.88009 4.11979 4.21953 4.31701 4.35584 4.41257 4.58593 4.61607 4.86863 4.93300 4.99318 5.12461 5.13474 5.23087 5.27257 5.28393 5.31684 5.37993 5.48648 5.53617 5.56616 5.61493 5.66957 5.77889 5.84201 5.91587 5.96698 6.12496 6.23202 6.32077 6.57460 6.60651 6.77360 6.90205 7.03171 7.12961 7.53003 7.71883 7.84709 8.00147 8.09819 8.62183 8.69568 8.83478 9.38102 10.85982 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.001880 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.985114 B =14887.370925 C =15536.789270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.083 3.917 4 H 0.070 0.930 5 C 0.129 3.871 6 N -0.742 5.742 7 C 0.713 3.287 8 O -0.567 6.567 9 N -0.644 5.644 10 C 0.276 3.724 11 C -0.286 4.286 12 C 0.051 3.949 13 N -0.321 5.321 14 C 0.258 3.742 15 C -0.527 4.527 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.308 5.308 24 C -0.097 4.097 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -0.256 30.400 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.290 6.290 3 C 0.024 3.976 4 H 0.088 0.912 5 C 0.005 3.995 6 N -0.399 5.399 7 C 0.413 3.587 8 O -0.442 6.442 9 N -0.294 5.294 10 C 0.022 3.978 11 C -0.318 4.318 12 C -0.099 4.099 13 N -0.103 5.103 14 C 0.141 3.859 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 N -0.140 5.140 24 C -0.116 4.116 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.153 4.153 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.240 0.760 36 H 0.178 0.822 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.278 -0.300 29.426 29.516 hybrid contribution -0.924 -0.637 -0.014 1.123 sum 1.353 -0.937 29.412 29.458 Atomic orbital electron populations 1.22915 0.81190 1.03036 0.99730 1.87984 1.19247 1.26889 1.94870 1.22443 0.95773 0.85548 0.93792 0.91182 1.21635 0.92252 1.02949 0.82679 1.44950 1.12386 1.77655 1.04925 1.15608 0.84810 0.78384 0.79943 1.90867 1.14985 1.54681 1.83672 1.41375 1.11804 1.73511 1.02696 1.18780 0.92723 1.02268 0.84034 1.21512 0.97166 1.18602 0.94478 1.22551 0.90329 1.02316 0.94716 1.49043 1.04198 1.49624 1.07401 1.19737 0.97612 0.99245 0.69348 1.21308 1.38158 1.00595 0.96443 0.91254 1.24948 0.95779 0.97429 0.95997 1.69929 1.46425 1.32548 1.04488 0.86278 0.79086 0.82690 0.78483 1.19578 1.20726 1.20780 1.77317 1.17424 1.27227 0.91984 1.22036 0.95803 1.00262 0.93495 1.22411 0.97586 0.98715 0.96886 1.22487 0.96659 1.01176 0.95880 1.22297 0.96116 0.98345 0.99057 1.22111 0.99467 0.98279 0.95407 0.94208 0.89404 0.93937 0.90446 0.90287 0.77340 0.76005 0.82191 0.81536 0.93760 0.92535 0.92416 0.89726 0.90218 0.91577 0.91803 0.91694 0.92167 0.91491 0.91980 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.36 101.05 1.05 1.20 16 2 O -0.37 -2.85 8.73 -35.23 -0.31 -3.16 16 3 C 0.08 0.56 1.84 -26.73 -0.05 0.51 16 4 H 0.07 0.40 7.61 -51.93 -0.40 0.00 16 5 C 0.13 1.19 5.08 -4.04 -0.02 1.17 16 6 N -0.74 -7.83 5.49 -65.23 -0.36 -8.19 16 7 C 0.71 10.83 8.53 -86.92 -0.74 10.09 16 8 O -0.57 -10.48 13.47 5.28 0.07 -10.41 16 9 N -0.64 -10.31 5.46 -15.51 -0.08 -10.39 16 10 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 11 C -0.29 -5.86 9.61 -39.84 -0.38 -6.24 16 12 C 0.05 1.04 11.44 -17.25 -0.20 0.84 16 13 N -0.32 -7.58 3.67 -62.55 -0.23 -7.81 16 14 C 0.26 6.63 6.26 -5.19 -0.03 6.60 16 15 C -0.53 -14.79 9.24 -34.44 -0.32 -15.10 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 19 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 N -0.31 -7.22 12.42 31.44 0.39 -6.82 16 24 C -0.10 -0.60 2.83 -89.50 -0.25 -0.86 16 25 C -0.12 -0.83 5.27 -25.03 -0.13 -0.96 16 26 C -0.12 -0.77 6.91 -24.69 -0.17 -0.94 16 27 C -0.12 -0.72 6.83 -25.08 -0.17 -0.89 16 28 C -0.12 -0.66 6.21 -25.61 -0.16 -0.82 16 29 H 0.04 0.18 6.91 -51.93 -0.36 -0.18 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.19 7.17 -51.93 -0.37 -0.18 16 32 H 0.08 0.83 7.33 -51.93 -0.38 0.45 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 3.16 7.03 -40.82 -0.29 2.87 16 35 H 0.41 5.25 8.84 -40.82 -0.36 4.89 16 36 H 0.16 3.22 5.91 -52.48 -0.31 2.91 16 37 H 0.17 2.78 8.06 -52.48 -0.42 2.36 16 38 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.68 7.02 -51.93 -0.36 0.31 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.36 6.24 -51.93 -0.32 0.04 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -33.48 395.06 -9.55 -43.02 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.77 Total: 5.42 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.93 Total: 0.64 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.45 Total: -57.95 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.24 Total: -13.57 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.48 -9.55 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596749068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.195 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds