Wall clock time and date at job start Tue Mar 31 2020 19:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 113.99752 * 2 1 4 4 H 1.09001 * 109.47627 * 4.24510 * 3 2 1 5 5 C 1.52997 * 109.47304 * 244.24029 * 3 2 1 6 6 N 1.46498 * 109.46859 * 63.19473 * 5 3 2 7 7 C 1.34787 * 120.00031 * 177.13460 * 6 5 3 8 8 O 1.21592 * 119.99469 * 359.71660 * 7 6 5 9 9 N 1.34768 * 119.99749 * 179.72477 * 7 6 5 10 10 C 1.40200 * 119.99831 * 179.97438 * 9 7 6 11 11 C 1.40398 * 125.97174 * 359.71981 * 10 9 7 12 12 C 1.35240 * 107.86960 * 179.82664 * 11 10 9 13 13 N 1.34958 * 107.85741 * 0.42510 * 12 11 10 14 14 C 1.46502 * 125.97894 * 179.70730 * 13 12 11 15 15 C 1.50709 * 109.47283 * 125.00064 * 14 13 12 16 16 H 1.07997 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99952 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99691 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47027 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46856 * 119.99745 * 19 17 15 22 22 H 1.48498 * 109.46701 * 239.99503 * 19 17 15 23 23 N 1.31205 * 125.97297 * 180.02562 * 10 9 7 24 24 C 1.53003 * 109.47127 * 124.24500 * 3 2 1 25 25 C 1.54263 * 110.03133 * 57.90409 * 24 3 2 26 26 C 1.54974 * 104.15773 * 217.13786 * 25 24 3 27 27 C 1.54885 * 102.77714 * 37.89013 * 26 25 24 28 28 C 1.53876 * 110.03056 * 300.68925 * 24 3 2 29 29 H 1.09002 * 109.47023 * 54.44114 * 1 2 3 30 30 H 1.09000 * 109.47170 * 174.43213 * 1 2 3 31 31 H 1.08992 * 109.47130 * 294.43524 * 1 2 3 32 32 H 1.08994 * 109.47246 * 303.19487 * 5 3 2 33 33 H 1.08999 * 109.47464 * 183.19079 * 5 3 2 34 34 H 0.96998 * 120.00332 * 356.85211 * 6 5 3 35 35 H 0.96998 * 120.00674 * 359.97438 * 9 7 6 36 36 H 1.08010 * 126.06433 * 359.97438 * 11 10 9 37 37 H 1.08006 * 126.07376 * 180.15632 * 12 11 10 38 38 H 1.09001 * 109.47623 * 245.00187 * 14 13 12 39 39 H 1.09000 * 109.47030 * 5.00674 * 14 13 12 40 40 H 0.97001 * 119.99680 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.01841 * 179.30008 * 24 3 2 42 42 H 1.08995 * 110.48708 * 335.78752 * 25 24 3 43 43 H 1.09005 * 110.48626 * 98.43574 * 25 24 3 44 44 H 1.09000 * 110.71770 * 279.57241 * 26 25 24 45 45 H 1.09004 * 110.91650 * 156.29923 * 26 25 24 46 46 H 1.08994 * 110.48758 * 203.39993 * 27 26 25 47 47 H 1.09001 * 110.59963 * 80.81322 * 27 26 25 48 48 H 1.09001 * 110.03470 * 238.57195 * 28 24 3 49 49 H 1.09004 * 110.03106 * 359.94738 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2218 2.0542 0.0761 5 6 2.7903 1.5164 -1.2991 6 7 1.8686 1.4621 -2.4365 7 6 2.3258 1.6805 -3.6855 8 8 3.5023 1.9277 -3.8676 9 7 1.4788 1.6251 -4.7323 10 6 1.9543 1.8527 -6.0315 11 6 3.2798 2.1526 -6.3838 12 6 3.3297 2.2962 -7.7276 13 7 2.0841 2.1052 -8.2107 14 6 1.6871 2.1756 -9.6192 15 6 1.0023 0.8921 -10.0129 16 1 0.8759 0.1028 -9.2867 17 6 0.5381 0.7252 -11.3003 18 7 0.6925 1.6862 -12.1847 19 14 -0.3114 -0.8654 -11.7880 20 1 -0.3592 -1.7796 -10.6189 21 1 -1.6939 -0.5691 -12.2422 22 1 0.4441 -1.5120 -12.8909 23 7 1.2371 1.8284 -7.1299 24 6 2.9592 1.4412 1.1925 25 6 4.0509 0.3533 1.1255 26 6 4.2739 -0.0514 2.6048 27 6 2.8416 -0.0046 3.1924 28 6 2.1908 1.2141 2.5061 29 1 -0.3633 0.5976 -0.8360 30 1 -0.3633 -1.0228 -0.0997 31 1 -0.3633 0.4251 0.9355 32 1 3.5418 0.7338 -1.4028 33 1 3.2803 2.4898 -1.2748 34 1 0.9300 1.2650 -2.2912 35 1 0.5403 1.4276 -4.5871 36 1 4.1125 2.2489 -5.7026 37 1 4.2092 2.5274 -8.3103 38 1 1.0023 3.0115 -9.7624 39 1 2.5718 2.3202 -10.2392 40 1 0.3662 1.5686 -13.0906 41 1 3.4173 2.4303 1.1940 42 1 3.7030 -0.5009 0.5447 43 1 4.9678 0.7588 0.6978 44 1 4.9214 0.6668 3.1076 45 1 4.6875 -1.0575 2.6749 46 1 2.8767 0.1393 4.2722 47 1 2.2966 -0.9163 2.9476 48 1 2.2766 2.0927 3.1456 49 1 1.1416 1.0081 2.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596749068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:06 Heat of formation + Delta-G solvation = -25.156203 kcal Electronic energy + Delta-G solvation = -28591.038432 eV Core-core repulsion = 24553.901027 eV Total energy + Delta-G solvation = -4037.137405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.22523 -41.08062 -40.14740 -37.63177 -36.32413 -35.67710 -35.24690 -32.88180 -31.88582 -30.91747 -29.58744 -28.69188 -27.81494 -27.20189 -25.02340 -23.72782 -22.86275 -21.97911 -21.43224 -21.28714 -20.48266 -19.24303 -18.68966 -18.25501 -17.61560 -17.30481 -16.97379 -16.68395 -16.51061 -16.15233 -15.86566 -15.70641 -15.52914 -15.07959 -14.93238 -14.47976 -14.36284 -14.12600 -14.03958 -13.79569 -13.71976 -13.58600 -13.11699 -12.93156 -12.72976 -12.35772 -12.30455 -12.07189 -12.04103 -11.84269 -11.81951 -11.65148 -11.51697 -11.39289 -11.38678 -11.32945 -11.15021 -10.71987 -10.43973 -10.23620 -9.71900 -9.05002 -8.32454 -6.46472 1.07750 1.12828 1.37313 1.38622 1.51913 1.70528 2.11070 2.36198 2.40767 2.80437 2.98971 3.11352 3.59147 3.78000 3.86191 3.96168 4.02508 4.11453 4.28536 4.39738 4.48682 4.58043 4.58623 4.65840 4.70912 4.75516 4.78958 4.85875 4.88230 4.91529 4.95633 4.97263 5.00560 5.03461 5.09079 5.13502 5.14711 5.30281 5.39909 5.43520 5.52704 5.57599 5.59699 5.75403 5.86952 5.97451 6.28501 6.30169 6.64092 6.74129 7.14106 7.23472 7.40987 8.75142 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.001880 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.985114 B =14887.370925 C =15536.789270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.089 0.911 5 C 0.128 3.872 6 N -0.720 5.720 7 C 0.711 3.289 8 O -0.600 6.600 9 N -0.637 5.637 10 C 0.284 3.716 11 C -0.293 4.293 12 C 0.057 3.943 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.270 1.270 23 N -0.348 5.348 24 C -0.096 4.096 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.112 4.112 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.201 0.799 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.272 0.728 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -0.523 31.897 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.308 6.308 3 C 0.033 3.967 4 H 0.106 0.894 5 C 0.004 3.996 6 N -0.377 5.377 7 C 0.411 3.589 8 O -0.478 6.478 9 N -0.289 5.289 10 C 0.029 3.971 11 C -0.325 4.325 12 C -0.092 4.092 13 N -0.127 5.127 14 C 0.153 3.847 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.796 3.204 20 H -0.200 1.200 21 H -0.198 1.198 22 H -0.195 1.195 23 N -0.179 5.179 24 C -0.115 4.115 25 C -0.158 4.158 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.150 4.150 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.257 0.743 36 H 0.184 0.816 37 H 0.218 0.782 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.737 -0.573 30.983 31.037 hybrid contribution -0.721 -0.551 -0.344 0.971 sum 1.016 -1.125 30.639 30.677 Atomic orbital electron populations 1.23077 0.80066 1.03594 1.00842 1.87979 1.20581 1.27327 1.94897 1.22393 0.96075 0.85858 0.92398 0.89355 1.21780 0.92214 1.02485 0.83130 1.44840 1.13447 1.75864 1.03540 1.15787 0.84236 0.78154 0.80767 1.90837 1.16435 1.56204 1.84313 1.41371 1.12789 1.73352 1.01341 1.19078 0.92734 1.00267 0.85051 1.21683 0.97357 1.18815 0.94596 1.23152 0.90259 1.00598 0.95155 1.48815 1.05324 1.51722 1.06808 1.19348 0.96947 0.97508 0.70874 1.21431 1.39275 1.01130 0.96609 0.93019 1.25738 0.96109 1.00628 0.95770 1.70001 1.46840 1.34123 1.04937 0.85293 0.78369 0.78639 0.78059 1.19986 1.19791 1.19543 1.77239 1.18534 1.29402 0.92687 1.22058 0.95477 1.00372 0.93565 1.22380 0.97797 0.98409 0.97168 1.22496 0.97114 1.01213 0.95379 1.22295 0.95705 0.98193 0.99629 1.22103 0.99363 0.98481 0.95045 0.93224 0.89234 0.92685 0.92031 0.90157 0.75569 0.74317 0.81635 0.78191 0.95988 0.92314 0.91854 0.88734 0.92028 0.91858 0.91096 0.92008 0.91299 0.92369 0.90920 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.36 113.37 1.17 1.35 16 2 O -0.39 -5.37 8.73 -148.98 -1.30 -6.67 16 3 C 0.09 1.07 1.84 30.59 0.06 1.13 16 4 H 0.09 0.74 7.61 -2.39 -0.02 0.73 16 5 C 0.13 2.20 5.08 86.38 0.44 2.64 16 6 N -0.72 -14.08 5.49 -478.54 -2.63 -16.71 16 7 C 0.71 20.88 8.53 179.05 1.53 22.41 16 8 O -0.60 -21.85 13.47 -4.01 -0.05 -21.90 16 9 N -0.64 -19.85 5.46 -321.23 -1.75 -21.60 16 10 C 0.28 11.66 8.11 133.31 1.08 12.74 16 11 C -0.29 -11.87 9.61 22.10 0.21 -11.66 16 12 C 0.06 2.30 11.44 83.52 0.96 3.25 16 13 N -0.34 -16.47 3.67 -351.82 -1.29 -17.76 16 14 C 0.27 14.27 6.26 85.64 0.54 14.80 16 15 C -0.55 -31.13 9.24 25.60 0.24 -30.89 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 0.99 5.46 84.65 0.46 1.45 16 18 N -0.92 -52.35 13.29 21.44 0.28 -52.06 16 19 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 N -0.35 -16.43 12.42 -54.44 -0.68 -17.11 16 24 C -0.10 -1.03 2.83 -10.07 -0.03 -1.06 16 25 C -0.12 -1.61 5.27 31.70 0.17 -1.44 16 26 C -0.12 -1.43 6.91 31.91 0.22 -1.21 16 27 C -0.12 -1.26 6.83 31.67 0.22 -1.05 16 28 C -0.11 -1.04 6.21 31.32 0.19 -0.85 16 29 H 0.05 0.33 6.91 -2.39 -0.02 0.31 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.35 7.17 -2.39 -0.02 0.34 16 32 H 0.06 1.29 7.33 -2.39 -0.02 1.28 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 5.67 7.03 -92.71 -0.65 5.02 16 35 H 0.42 10.39 8.84 -92.71 -0.82 9.57 16 36 H 0.17 6.57 5.91 -2.91 -0.02 6.55 16 37 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 38 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 3.00 8.07 -2.39 -0.02 2.99 16 40 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.05 7.02 -2.39 -0.02 1.03 16 43 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.06 0.59 6.24 -2.39 -0.01 0.57 16 Total: -1.00 -72.01 395.06 1.56 -70.45 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.50 Total: 25.79 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 7.45 Total: 11.63 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -6.06 Total: -125.23 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.35 Total: -28.57 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.01 1.56 -70.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596749068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.294 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds