Wall clock time and date at job start Tue Mar 31 2020 19:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00379 * 2 1 4 4 H 1.08998 * 109.46949 * 34.47665 * 3 2 1 5 5 C 1.53007 * 109.47048 * 154.47442 * 3 2 1 6 6 N 1.46502 * 109.46762 * 294.22854 * 5 3 2 7 7 C 1.34775 * 119.99572 * 179.97438 * 6 5 3 8 8 O 1.21599 * 120.00215 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00102 * 179.97438 * 7 6 5 10 10 C 1.40193 * 119.99985 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97379 * 0.02562 * 10 9 7 12 12 C 1.35242 * 107.86527 * 179.71815 * 11 10 9 13 13 N 1.34963 * 107.86076 * 0.42292 * 12 11 10 14 14 C 1.46502 * 125.97687 * 179.84290 * 13 12 11 15 15 C 1.50703 * 109.47164 * 124.71756 * 14 13 12 16 16 H 1.07990 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99720 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00305 * 359.71964 * 17 15 14 19 19 Si 1.86795 * 119.99799 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47361 * 179.72071 * 19 17 15 21 21 H 1.48497 * 109.47223 * 299.72400 * 19 17 15 22 22 H 1.48507 * 109.47325 * 59.72163 * 19 17 15 23 23 N 1.31214 * 125.97215 * 179.97438 * 10 9 7 24 24 C 1.52998 * 109.47017 * 274.47423 * 3 2 1 25 25 C 1.54268 * 110.03364 * 297.83697 * 24 3 2 26 26 C 1.54892 * 104.19318 * 217.10793 * 25 24 3 27 27 C 1.54890 * 102.75217 * 37.94081 * 26 25 24 28 28 C 1.53875 * 110.02930 * 180.67011 * 24 3 2 29 29 H 1.09004 * 109.47444 * 55.05909 * 1 2 3 30 30 H 1.09004 * 109.47726 * 175.06304 * 1 2 3 31 31 H 1.09005 * 109.47083 * 295.06348 * 1 2 3 32 32 H 1.08992 * 109.46604 * 174.22748 * 5 3 2 33 33 H 1.09002 * 109.46895 * 54.22857 * 5 3 2 34 34 H 0.96998 * 120.00219 * 0.02562 * 6 5 3 35 35 H 0.96998 * 119.99689 * 0.02562 * 9 7 6 36 36 H 1.07997 * 126.06544 * 0.02562 * 11 10 9 37 37 H 1.07998 * 126.07302 * 180.26556 * 12 11 10 38 38 H 1.09001 * 109.47367 * 4.71321 * 14 13 12 39 39 H 1.09005 * 109.46636 * 244.71379 * 14 13 12 40 40 H 0.97003 * 119.99882 * 0.27509 * 18 17 15 41 41 H 1.09001 * 110.01667 * 59.27763 * 24 3 2 42 42 H 1.09006 * 110.48433 * 335.78088 * 25 24 3 43 43 H 1.08998 * 110.48769 * 98.43022 * 25 24 3 44 44 H 1.08999 * 110.75322 * 279.62412 * 26 25 24 45 45 H 1.09005 * 110.91097 * 156.32934 * 26 25 24 46 46 H 1.08990 * 110.48701 * 203.37680 * 27 26 25 47 47 H 1.09000 * 110.59860 * 80.79196 * 27 26 25 48 48 H 1.09003 * 110.03201 * 238.57028 * 28 24 3 49 49 H 1.08995 * 110.03748 * 0.02562 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3841 1.9819 0.5817 5 6 3.4069 1.2417 0.6216 6 7 3.2951 0.8847 2.0381 7 6 4.4053 0.7690 2.7934 8 8 5.4996 0.9615 2.2994 9 7 4.3025 0.4410 4.0967 10 6 5.4573 0.3212 4.8825 11 6 6.7770 0.5145 4.4440 12 6 7.5985 0.3132 5.4993 13 7 6.8335 -0.0050 6.5647 14 6 7.3190 -0.3063 7.9136 15 6 6.6451 0.6062 8.9056 16 1 5.9272 1.3378 8.5653 17 6 6.9457 0.5078 10.2477 18 7 7.8166 -0.3860 10.6627 19 14 6.1109 1.6394 11.4772 20 1 6.5984 1.3298 12.8453 21 1 6.4295 3.0515 11.1460 22 1 4.6409 1.4367 11.4179 23 7 5.4936 0.0098 6.1566 24 6 2.1149 1.8170 -1.4381 25 6 3.0426 0.8983 -2.2597 26 6 3.8072 1.8684 -3.1943 27 6 4.0495 3.0989 -2.2854 28 6 2.7551 3.2162 -1.4544 29 1 -0.3634 0.5886 -0.8424 30 1 -0.3635 -1.0238 -0.0884 31 1 -0.3633 0.4354 0.9309 32 1 3.8903 2.2142 0.5291 33 1 4.0014 0.4896 0.1031 34 1 2.4222 0.7308 2.4320 35 1 3.4295 0.2878 4.4908 36 1 7.0816 0.7818 3.4430 37 1 8.6757 0.3906 5.4905 38 1 8.3976 -0.1539 7.9541 39 1 7.0891 -1.3432 8.1593 40 1 8.2503 -0.9735 10.0241 41 1 1.1255 1.8538 -1.8940 42 1 3.7374 0.3731 -1.6042 43 1 2.4568 0.1883 -2.8436 44 1 3.1951 2.1383 -4.0549 45 1 4.7535 1.4336 -3.5163 46 1 4.1986 3.9948 -2.8880 47 1 4.9072 2.9315 -1.6339 48 1 2.0767 3.9318 -1.9190 49 1 2.9917 3.5305 -0.4379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596749069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:12 Heat of formation + Delta-G solvation = -3.793816 kcal Electronic energy + Delta-G solvation = -28755.300389 eV Core-core repulsion = 24719.089326 eV Total energy + Delta-G solvation = -4036.211063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79109 -40.15404 -39.23485 -37.28109 -35.06027 -34.54605 -33.61286 -31.40160 -30.55536 -29.31400 -29.08655 -27.71749 -26.64294 -25.91761 -23.45662 -22.95816 -21.72491 -20.98250 -20.52405 -20.08044 -19.47028 -17.96502 -17.39061 -17.14924 -16.90531 -16.33951 -15.96037 -15.53438 -15.29214 -15.12368 -14.67450 -14.53002 -14.27843 -14.01397 -13.88257 -13.75960 -13.43575 -13.07850 -12.85866 -12.38164 -12.28954 -12.17207 -12.04623 -11.79031 -11.61933 -11.42567 -11.35914 -11.29577 -11.13593 -10.89077 -10.79765 -10.70182 -10.40927 -10.15113 -10.11877 -9.93620 -9.68238 -9.21201 -8.94978 -8.56019 -8.13454 -7.42867 -6.55778 -4.29541 2.37354 2.63972 3.09658 3.26285 3.38762 3.40561 3.53843 3.60545 3.83245 4.15777 4.16878 4.25061 4.36714 4.43518 4.57731 4.65186 4.81620 4.91540 4.97546 5.07685 5.17818 5.18348 5.21743 5.27651 5.30167 5.34294 5.40754 5.46807 5.55314 5.60736 5.64161 5.75782 5.77458 5.89823 5.94827 6.06685 6.20067 6.28532 6.47342 6.51265 6.69012 6.73622 6.80957 7.01562 7.46967 7.66513 7.88769 7.94982 8.37439 8.59408 8.60447 8.67235 9.38542 10.81612 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.001975 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.207326 B =14176.634643 C =14658.950686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.083 3.917 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.740 5.740 7 C 0.714 3.286 8 O -0.568 6.568 9 N -0.644 5.644 10 C 0.279 3.721 11 C -0.283 4.283 12 C 0.049 3.951 13 N -0.320 5.320 14 C 0.250 3.750 15 C -0.606 4.606 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.306 5.306 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.124 4.124 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.397 0.603 35 H 0.407 0.593 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 4.601 -27.265 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.025 3.975 4 H 0.085 0.915 5 C 0.018 3.982 6 N -0.397 5.397 7 C 0.413 3.587 8 O -0.444 6.444 9 N -0.294 5.294 10 C 0.024 3.976 11 C -0.315 4.315 12 C -0.100 4.100 13 N -0.101 5.101 14 C 0.132 3.868 15 C -0.645 4.645 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.541 5.541 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.212 1.212 23 N -0.137 5.137 24 C -0.130 4.130 25 C -0.154 4.154 26 C -0.164 4.164 27 C -0.164 4.164 28 C -0.162 4.162 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.241 0.759 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.626 4.654 -24.973 28.827 hybrid contribution -0.631 -0.122 -1.948 2.051 sum -14.257 4.531 -26.921 30.799 Atomic orbital electron populations 1.22805 0.81088 1.02898 0.99983 1.88001 1.19553 1.26945 1.94988 1.22446 0.94259 0.85231 0.95613 0.91458 1.21433 0.95388 1.02153 0.79194 1.44905 1.07765 1.76430 1.10591 1.15593 0.84594 0.78255 0.80241 1.90865 1.25061 1.56414 1.72041 1.41376 1.07667 1.72349 1.07977 1.18787 0.86524 1.02211 0.90058 1.21526 0.89957 1.18548 1.01432 1.22552 0.98358 1.01624 0.87476 1.48748 1.01690 1.49834 1.09872 1.19740 0.94888 0.97709 0.74503 1.22104 1.27964 1.21129 0.93281 0.91873 1.25925 0.96089 0.98705 0.97565 1.70850 1.25646 1.19270 1.38303 0.83416 0.75696 0.74961 0.75518 1.20549 1.21258 1.21176 1.77341 0.99129 1.27996 1.09211 1.22219 1.00257 0.95521 0.95010 1.22429 0.98037 0.97236 0.97747 1.22514 1.00228 0.95872 0.97782 1.22380 0.97678 0.98212 0.98164 1.22257 0.97177 0.95765 1.00967 0.94025 0.89530 0.93966 0.89680 0.90167 0.76933 0.75878 0.82026 0.81571 0.93651 0.94832 0.92277 0.90505 0.90521 0.91657 0.91788 0.91442 0.91697 0.91087 0.91611 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.80 101.05 1.09 1.25 16 2 O -0.38 -3.02 10.03 -35.23 -0.35 -3.37 16 3 C 0.08 0.58 1.83 -26.73 -0.05 0.53 16 4 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 5 C 0.14 1.33 4.75 -4.04 -0.02 1.31 16 6 N -0.74 -7.91 5.52 -65.22 -0.36 -8.27 16 7 C 0.71 10.86 8.53 -86.92 -0.74 10.12 16 8 O -0.57 -10.45 13.47 5.28 0.07 -10.38 16 9 N -0.64 -10.37 5.46 -15.50 -0.08 -10.46 16 10 C 0.28 5.78 8.11 -154.36 -1.25 4.53 16 11 C -0.28 -5.82 9.61 -39.83 -0.38 -6.20 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 13 N -0.32 -7.64 3.67 -62.56 -0.23 -7.87 16 14 C 0.25 6.43 5.57 -5.19 -0.03 6.40 16 15 C -0.61 -17.25 9.24 -34.44 -0.32 -17.57 16 16 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 18 N -0.91 -26.56 13.65 55.43 0.76 -25.81 16 19 Si 1.08 25.11 29.90 -169.99 -5.08 20.03 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.31 -7.25 12.42 31.44 0.39 -6.86 16 24 C -0.11 -0.69 2.90 -89.50 -0.26 -0.94 16 25 C -0.12 -0.81 5.91 -25.07 -0.15 -0.96 16 26 C -0.13 -0.79 6.91 -24.74 -0.17 -0.96 16 27 C -0.13 -0.81 6.83 -25.07 -0.17 -0.98 16 28 C -0.12 -0.74 5.84 -25.61 -0.15 -0.89 16 29 H 0.04 0.18 7.45 -51.93 -0.39 -0.20 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.81 6.28 -51.93 -0.33 0.49 16 33 H 0.08 0.87 6.22 -51.93 -0.32 0.55 16 34 H 0.40 3.27 8.49 -40.82 -0.35 2.93 16 35 H 0.41 5.34 8.84 -40.82 -0.36 4.98 16 36 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 37 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 39 H 0.03 0.90 8.01 -51.93 -0.42 0.48 16 40 H 0.27 7.67 7.22 -40.82 -0.29 7.38 16 41 H 0.08 0.43 7.50 -51.93 -0.39 0.04 16 42 H 0.08 0.63 5.70 -51.93 -0.30 0.34 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.44 6.31 -51.93 -0.33 0.11 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -34.48 393.91 -9.46 -43.94 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.61 Total: 6.15 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.89 Total: -3.04 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.47 Total: -59.26 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.28 Total: -13.75 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.48 -9.46 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596749069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.145 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds