Wall clock time and date at job start Tue Mar 31 2020 19:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00379 * 2 1 4 4 H 1.08998 * 109.46949 * 34.47665 * 3 2 1 5 5 C 1.53007 * 109.47048 * 154.47442 * 3 2 1 6 6 N 1.46502 * 109.46762 * 294.22854 * 5 3 2 7 7 C 1.34775 * 119.99572 * 179.97438 * 6 5 3 8 8 O 1.21599 * 120.00215 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00102 * 179.97438 * 7 6 5 10 10 C 1.40193 * 119.99985 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97379 * 0.02562 * 10 9 7 12 12 C 1.35242 * 107.86527 * 179.71815 * 11 10 9 13 13 N 1.34963 * 107.86076 * 0.42292 * 12 11 10 14 14 C 1.46502 * 125.97687 * 179.84290 * 13 12 11 15 15 C 1.50703 * 109.47164 * 124.71756 * 14 13 12 16 16 H 1.07990 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99720 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00305 * 359.71964 * 17 15 14 19 19 Si 1.86795 * 119.99799 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47361 * 179.72071 * 19 17 15 21 21 H 1.48497 * 109.47223 * 299.72400 * 19 17 15 22 22 H 1.48507 * 109.47325 * 59.72163 * 19 17 15 23 23 N 1.31214 * 125.97215 * 179.97438 * 10 9 7 24 24 C 1.52998 * 109.47017 * 274.47423 * 3 2 1 25 25 C 1.54268 * 110.03364 * 297.83697 * 24 3 2 26 26 C 1.54892 * 104.19318 * 217.10793 * 25 24 3 27 27 C 1.54890 * 102.75217 * 37.94081 * 26 25 24 28 28 C 1.53875 * 110.02930 * 180.67011 * 24 3 2 29 29 H 1.09004 * 109.47444 * 55.05909 * 1 2 3 30 30 H 1.09004 * 109.47726 * 175.06304 * 1 2 3 31 31 H 1.09005 * 109.47083 * 295.06348 * 1 2 3 32 32 H 1.08992 * 109.46604 * 174.22748 * 5 3 2 33 33 H 1.09002 * 109.46895 * 54.22857 * 5 3 2 34 34 H 0.96998 * 120.00219 * 0.02562 * 6 5 3 35 35 H 0.96998 * 119.99689 * 0.02562 * 9 7 6 36 36 H 1.07997 * 126.06544 * 0.02562 * 11 10 9 37 37 H 1.07998 * 126.07302 * 180.26556 * 12 11 10 38 38 H 1.09001 * 109.47367 * 4.71321 * 14 13 12 39 39 H 1.09005 * 109.46636 * 244.71379 * 14 13 12 40 40 H 0.97003 * 119.99882 * 0.27509 * 18 17 15 41 41 H 1.09001 * 110.01667 * 59.27763 * 24 3 2 42 42 H 1.09006 * 110.48433 * 335.78088 * 25 24 3 43 43 H 1.08998 * 110.48769 * 98.43022 * 25 24 3 44 44 H 1.08999 * 110.75322 * 279.62412 * 26 25 24 45 45 H 1.09005 * 110.91097 * 156.32934 * 26 25 24 46 46 H 1.08990 * 110.48701 * 203.37680 * 27 26 25 47 47 H 1.09000 * 110.59860 * 80.79196 * 27 26 25 48 48 H 1.09003 * 110.03201 * 238.57028 * 28 24 3 49 49 H 1.08995 * 110.03748 * 0.02562 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3841 1.9819 0.5817 5 6 3.4069 1.2417 0.6216 6 7 3.2951 0.8847 2.0381 7 6 4.4053 0.7690 2.7934 8 8 5.4996 0.9615 2.2994 9 7 4.3025 0.4410 4.0967 10 6 5.4573 0.3212 4.8825 11 6 6.7770 0.5145 4.4440 12 6 7.5985 0.3132 5.4993 13 7 6.8335 -0.0050 6.5647 14 6 7.3190 -0.3063 7.9136 15 6 6.6451 0.6062 8.9056 16 1 5.9272 1.3378 8.5653 17 6 6.9457 0.5078 10.2477 18 7 7.8166 -0.3860 10.6627 19 14 6.1109 1.6394 11.4772 20 1 6.5984 1.3298 12.8453 21 1 6.4295 3.0515 11.1460 22 1 4.6409 1.4367 11.4179 23 7 5.4936 0.0098 6.1566 24 6 2.1149 1.8170 -1.4381 25 6 3.0426 0.8983 -2.2597 26 6 3.8072 1.8684 -3.1943 27 6 4.0495 3.0989 -2.2854 28 6 2.7551 3.2162 -1.4544 29 1 -0.3634 0.5886 -0.8424 30 1 -0.3635 -1.0238 -0.0884 31 1 -0.3633 0.4354 0.9309 32 1 3.8903 2.2142 0.5291 33 1 4.0014 0.4896 0.1031 34 1 2.4222 0.7308 2.4320 35 1 3.4295 0.2878 4.4908 36 1 7.0816 0.7818 3.4430 37 1 8.6757 0.3906 5.4905 38 1 8.3976 -0.1539 7.9541 39 1 7.0891 -1.3432 8.1593 40 1 8.2503 -0.9735 10.0241 41 1 1.1255 1.8538 -1.8940 42 1 3.7374 0.3731 -1.6042 43 1 2.4568 0.1883 -2.8436 44 1 3.1951 2.1383 -4.0549 45 1 4.7535 1.4336 -3.5163 46 1 4.1986 3.9948 -2.8880 47 1 4.9072 2.9315 -1.6339 48 1 2.0767 3.9318 -1.9190 49 1 2.9917 3.5305 -0.4379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596749069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:11 Heat of formation + Delta-G solvation = -26.458327 kcal Electronic energy + Delta-G solvation = -28756.283196 eV Core-core repulsion = 24719.089326 eV Total energy + Delta-G solvation = -4037.193870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.30258 -41.15798 -40.21725 -37.80435 -36.50510 -35.72849 -35.49915 -32.77014 -31.67383 -30.99040 -29.58970 -28.54937 -27.92675 -26.96625 -25.10498 -23.96046 -23.01970 -22.14811 -21.49019 -21.39763 -20.24883 -19.26324 -19.08662 -18.40084 -17.83024 -17.40054 -16.85144 -16.52149 -16.49996 -15.97892 -15.85369 -15.72570 -15.53658 -15.17625 -15.05951 -14.94416 -14.60871 -14.19112 -13.94199 -13.89951 -13.69289 -13.48418 -13.21257 -12.83599 -12.60814 -12.55392 -12.10375 -12.02161 -11.94921 -11.92200 -11.86661 -11.78743 -11.68970 -11.40885 -11.23699 -11.19948 -11.00058 -10.68746 -10.44842 -10.21301 -9.79813 -9.14011 -8.76119 -6.54889 0.98764 1.07598 1.51367 1.58070 1.64453 1.79529 2.02849 2.35950 2.49383 2.74247 3.01721 3.08923 3.61173 3.70844 3.75080 3.87960 4.00916 4.10979 4.15097 4.30889 4.48588 4.52979 4.56994 4.57772 4.63250 4.66096 4.69929 4.73832 4.77432 4.80940 4.86646 4.87004 4.93088 4.98445 5.07518 5.08390 5.11278 5.27782 5.36831 5.40366 5.45981 5.53931 5.55858 5.78599 5.85568 5.96063 6.24452 6.28132 6.42666 6.67707 7.07545 7.20878 7.38751 8.59020 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.001975 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.207326 B =14176.634643 C =14658.950686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.090 3.910 4 H 0.085 0.915 5 C 0.141 3.859 6 N -0.718 5.718 7 C 0.712 3.288 8 O -0.600 6.600 9 N -0.636 5.636 10 C 0.287 3.713 11 C -0.290 4.290 12 C 0.055 3.945 13 N -0.345 5.345 14 C 0.260 3.740 15 C -0.620 4.620 16 H 0.045 0.955 17 C -0.021 4.021 18 N -0.923 5.923 19 Si 1.121 2.879 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.275 1.275 23 N -0.347 5.347 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.412 0.588 35 H 0.420 0.580 36 H 0.169 0.831 37 H 0.202 0.798 38 H 0.054 0.946 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.056 0.944 48 H 0.078 0.922 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.695 5.847 -28.357 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.032 3.968 4 H 0.103 0.897 5 C 0.017 3.983 6 N -0.375 5.375 7 C 0.411 3.589 8 O -0.479 6.479 9 N -0.288 5.288 10 C 0.032 3.968 11 C -0.321 4.321 12 C -0.093 4.093 13 N -0.127 5.127 14 C 0.140 3.860 15 C -0.658 4.658 16 H 0.064 0.936 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.941 3.059 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.200 1.200 23 N -0.178 5.178 24 C -0.124 4.124 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.167 4.167 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.258 0.742 36 H 0.186 0.814 37 H 0.218 0.782 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.354 5.891 -26.118 30.865 hybrid contribution -0.148 -0.541 -1.792 1.878 sum -15.503 5.351 -27.910 32.372 Atomic orbital electron populations 1.22961 0.79674 1.03586 1.01049 1.87975 1.21138 1.27386 1.95153 1.22382 0.92833 0.85424 0.96127 0.89714 1.21550 0.97165 1.01520 0.78018 1.44800 1.07203 1.74739 1.10738 1.15764 0.85197 0.77985 0.79929 1.90836 1.26680 1.57828 1.72506 1.41379 1.07129 1.72246 1.08073 1.19089 0.88116 1.00079 0.89560 1.21705 0.90041 1.18689 1.01637 1.23167 0.99959 0.99787 0.86372 1.48550 1.02352 1.51948 1.09820 1.19419 0.95029 0.96148 0.75377 1.22281 1.27927 1.21278 0.94348 0.93646 1.27302 0.95897 0.99285 0.99524 1.70947 1.26652 1.20066 1.38249 0.82872 0.75353 0.74006 0.73638 1.20011 1.19624 1.20037 1.77259 0.99495 1.30305 1.10764 1.22196 1.00695 0.95266 0.94279 1.22405 0.97964 0.97477 0.97740 1.22513 1.00153 0.95612 0.97969 1.22388 0.97530 0.98586 0.98176 1.22255 0.97043 0.95883 1.00795 0.92828 0.89180 0.92972 0.89713 0.91762 0.75173 0.74234 0.81401 0.78164 0.92828 0.96607 0.92999 0.89142 0.92296 0.91578 0.90751 0.91901 0.90933 0.92556 0.90289 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.80 113.37 1.22 1.42 16 2 O -0.40 -5.64 10.03 -148.98 -1.49 -7.13 16 3 C 0.09 1.09 1.83 30.60 0.06 1.15 16 4 H 0.09 0.75 7.89 -2.39 -0.02 0.73 16 5 C 0.14 2.50 4.75 86.38 0.41 2.91 16 6 N -0.72 -14.35 5.52 -478.51 -2.64 -16.99 16 7 C 0.71 21.03 8.53 179.05 1.53 22.56 16 8 O -0.60 -21.85 13.47 -4.03 -0.05 -21.91 16 9 N -0.64 -20.01 5.46 -321.22 -1.75 -21.76 16 10 C 0.29 11.86 8.11 133.31 1.08 12.94 16 11 C -0.29 -11.74 9.61 22.11 0.21 -11.53 16 12 C 0.06 2.24 11.44 83.52 0.96 3.20 16 13 N -0.34 -16.60 3.67 -351.83 -1.29 -17.89 16 14 C 0.26 13.58 5.57 85.63 0.48 14.06 16 15 C -0.62 -35.68 9.24 25.60 0.24 -35.44 16 16 H 0.05 2.73 7.81 -2.92 -0.02 2.71 16 17 C -0.02 -1.16 5.46 84.66 0.46 -0.70 16 18 N -0.92 -54.39 13.65 21.45 0.29 -54.10 16 19 Si 1.12 49.98 29.90 68.60 2.05 52.03 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 N -0.35 -16.59 12.42 -54.43 -0.68 -17.27 16 24 C -0.11 -1.09 2.90 -10.07 -0.03 -1.12 16 25 C -0.12 -1.53 5.91 31.67 0.19 -1.35 16 26 C -0.12 -1.45 6.91 31.89 0.22 -1.23 16 27 C -0.13 -1.53 6.83 31.67 0.22 -1.31 16 28 C -0.12 -1.22 5.84 31.32 0.18 -1.04 16 29 H 0.05 0.33 7.45 -2.38 -0.02 0.31 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.08 1.55 6.28 -2.39 -0.02 1.53 16 33 H 0.06 1.39 6.22 -2.39 -0.01 1.38 16 34 H 0.41 5.93 8.49 -92.71 -0.79 5.14 16 35 H 0.42 10.59 8.84 -92.71 -0.82 9.77 16 36 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 37 H 0.20 6.42 8.06 -2.91 -0.02 6.40 16 38 H 0.05 2.69 7.94 -2.39 -0.02 2.67 16 39 H 0.02 0.88 8.01 -2.38 -0.02 0.86 16 40 H 0.26 15.20 7.22 -92.71 -0.67 14.53 16 41 H 0.09 0.75 7.50 -2.39 -0.02 0.73 16 42 H 0.06 0.98 5.70 -2.38 -0.01 0.96 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.73 6.31 -2.39 -0.02 0.71 16 Total: -1.00 -74.32 393.91 1.33 -72.98 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.52 Total: 27.52 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 7.42 Total: 4.51 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -6.07 Total: -128.01 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.55 Total: -29.04 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -74.32 1.33 -72.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596749069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.526 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds