Wall clock time and date at job start Tue Mar 31 2020 20:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47083 * 2 1 4 4 C 1.53006 * 109.47530 * 240.00160 * 2 1 3 5 5 N 1.46497 * 109.47399 * 120.00161 * 2 1 3 6 6 N 1.28719 * 125.31530 * 359.97347 * 5 2 1 7 7 N 1.28984 * 108.98786 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25036 * 0.02562 * 7 6 5 9 9 C 1.48003 * 126.70045 * 179.97438 * 8 7 6 10 10 O 1.21532 * 120.00708 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99537 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99592 * 179.72262 * 11 9 8 13 13 C 1.52998 * 109.46929 * 180.27145 * 12 11 9 14 14 C 1.53044 * 109.46603 * 295.03064 * 13 12 11 15 15 C 1.53189 * 109.31507 * 178.59866 * 14 13 12 16 16 N 1.46924 * 108.76511 * 54.65520 * 15 14 13 17 17 C 1.36940 * 120.63304 * 126.35801 * 16 15 14 18 18 H 1.08006 * 119.99529 * 331.86374 * 17 16 15 19 19 C 1.38807 * 120.00038 * 151.86250 * 17 16 15 20 20 N 1.31611 * 120.00453 * 343.06570 * 19 17 16 21 21 Si 1.86806 * 120.00009 * 163.07030 * 19 17 16 22 22 H 1.48501 * 109.47167 * 89.99832 * 21 19 17 23 23 H 1.48497 * 109.47294 * 209.99985 * 21 19 17 24 24 H 1.48502 * 109.46930 * 330.00055 * 21 19 17 25 25 C 1.46925 * 118.74173 * 306.38735 * 16 15 14 26 26 C 1.53045 * 109.46200 * 174.97312 * 13 12 11 27 27 N 1.28868 * 125.32154 * 180.29357 * 5 2 1 28 28 H 1.08998 * 109.47234 * 300.00081 * 1 2 3 29 29 H 1.09004 * 109.47230 * 60.00143 * 1 2 3 30 30 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46824 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46970 * 300.00016 * 3 2 1 33 33 H 1.08998 * 109.47152 * 59.99869 * 3 2 1 34 34 H 1.09002 * 109.46673 * 300.00350 * 4 2 1 35 35 H 1.09004 * 109.47112 * 59.99624 * 4 2 1 36 36 H 1.08991 * 109.47303 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00738 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.47270 * 300.27506 * 12 11 9 39 39 H 1.09000 * 109.46868 * 60.27763 * 12 11 9 40 40 H 1.09006 * 109.46170 * 55.00712 * 13 12 11 41 41 H 1.09000 * 109.49601 * 298.56747 * 14 13 12 42 42 H 1.08997 * 109.49569 * 58.65886 * 14 13 12 43 43 H 1.08993 * 109.59879 * 294.86944 * 15 14 13 44 44 H 1.08999 * 109.70001 * 174.49987 * 15 14 13 45 45 H 0.96996 * 120.00735 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.58363 * 293.82055 * 25 16 15 47 47 H 1.08997 * 109.70751 * 173.46889 * 25 16 15 48 48 H 1.08998 * 109.49555 * 301.34463 * 26 13 12 49 49 H 1.09000 * 109.49637 * 61.43419 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2762 -1.2161 2.1071 7 7 2.0307 -1.7388 3.0133 8 6 3.3029 -1.5251 2.6437 9 6 4.5190 -1.9460 3.3748 10 8 5.6182 -1.6863 2.9262 11 7 4.4073 -2.6175 4.5381 12 6 5.6110 -3.0395 5.2587 13 6 5.2078 -3.7822 6.5341 14 6 4.4864 -2.8184 7.4790 15 6 4.0534 -3.5737 8.7394 16 7 5.2312 -4.2263 9.3274 17 6 5.5603 -4.0202 10.6406 18 1 5.2882 -3.0948 11.1266 19 6 6.2435 -5.0005 11.3470 20 7 6.2858 -6.2334 10.8884 21 14 7.1030 -4.5699 12.9487 22 1 6.1621 -4.7595 14.0819 23 1 8.2821 -5.4540 13.1311 24 1 7.5480 -3.1537 12.9064 25 6 6.0497 -5.1037 8.4795 26 6 6.4599 -4.3314 7.2218 27 7 3.2581 -0.8619 1.5036 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.5300 -2.8245 4.8964 38 1 6.2012 -3.7007 4.6243 39 1 6.2037 -2.1629 5.5206 40 1 4.5423 -4.6070 6.2790 41 1 5.1596 -2.0066 7.7543 42 1 3.6077 -2.4096 6.9803 43 1 3.3110 -4.3274 8.4771 44 1 3.6262 -2.8745 9.4583 45 1 6.7629 -6.9185 11.3822 46 1 5.4700 -5.9822 8.1959 47 1 6.9410 -5.4145 9.0245 48 1 6.9860 -4.9995 6.5399 49 1 7.1145 -3.5053 7.4995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597294186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:54 Heat of formation + Delta-G solvation = 102.488295 kcal Electronic energy + Delta-G solvation = -28952.642181 eV Core-core repulsion = 24953.332608 eV Total energy + Delta-G solvation = -3999.309573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.71231 -39.78920 -38.13417 -37.76069 -35.08887 -33.82090 -33.10103 -32.52813 -30.77148 -29.71236 -28.29247 -28.20337 -27.30775 -25.31098 -24.78873 -23.71182 -22.22802 -21.28181 -21.11628 -20.70410 -19.15638 -18.20420 -17.69995 -17.11836 -16.68783 -16.02302 -15.40400 -14.92762 -14.82097 -14.72554 -14.40640 -14.17145 -13.96557 -13.58970 -13.53228 -13.44902 -13.16899 -13.10050 -13.00989 -12.53738 -12.49455 -12.36703 -12.32697 -12.16068 -11.88618 -11.78430 -11.34590 -11.31160 -11.28751 -10.98032 -10.68777 -10.65137 -10.51176 -10.47820 -10.21055 -10.19209 -9.88180 -9.53587 -9.43361 -9.11733 -8.43972 -6.63231 -5.76067 -3.18050 0.75219 1.23631 1.32672 2.68710 2.96519 3.39503 3.46627 3.49241 3.56531 3.82767 3.86454 3.97793 4.31537 4.52531 4.77050 4.78945 4.79345 4.95721 4.97454 4.99920 5.01394 5.10308 5.22784 5.27295 5.37117 5.40151 5.43782 5.43835 5.56075 5.62174 5.78856 5.85798 5.90494 6.05721 6.12882 6.31376 6.35805 6.49807 6.62910 6.70447 6.79071 6.84687 7.02222 7.27692 7.40555 7.68910 7.82521 7.85921 8.00459 8.48572 9.24816 9.88481 10.45247 11.32553 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.001905 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.144399 B =14697.703710 C =14999.732770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.126 5.126 6 N -0.055 5.055 7 N -0.255 5.255 8 C 0.128 3.872 9 C 0.613 3.387 10 O -0.513 6.513 11 N -0.698 5.698 12 C 0.124 3.876 13 C -0.091 4.091 14 C -0.129 4.129 15 C 0.145 3.855 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.172 3.828 26 C -0.132 4.132 27 N -0.246 5.246 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.017 0.983 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.088 0.912 48 H 0.052 0.948 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 12.521 -25.723 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.040 5.040 6 N -0.047 5.047 7 N -0.130 5.130 8 C -0.156 4.156 9 C 0.392 3.608 10 O -0.385 6.385 11 N -0.351 5.351 12 C 0.001 3.999 13 C -0.110 4.110 14 C -0.168 4.168 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.046 3.954 26 C -0.172 4.172 27 N -0.099 5.099 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.758 12.637 -26.069 30.904 hybrid contribution 0.435 -0.016 1.059 1.145 sum -10.323 12.621 -25.010 29.855 Atomic orbital electron populations 1.22115 0.89713 1.04810 1.04518 1.21540 0.96675 0.92885 0.79331 1.22270 1.03562 0.91820 1.04266 1.22266 1.03548 1.01154 0.94923 1.50765 1.00939 1.34245 1.18093 1.78891 1.21577 1.08826 0.95444 1.76166 1.00079 1.17455 1.19255 1.25386 0.94630 1.02139 0.93478 1.16119 0.84563 0.79103 0.80986 1.90849 1.25280 1.55149 1.67219 1.45842 1.11986 1.55769 1.21471 1.21760 0.85594 0.99540 0.92977 1.21339 0.99227 0.97827 0.92571 1.22094 0.98991 0.98258 0.97484 1.20886 0.89827 0.94678 0.92726 1.44052 1.25491 1.54278 1.07715 1.19169 1.33408 0.98527 0.86927 0.91797 1.25037 1.02239 0.94633 0.97818 1.70020 1.44689 1.00102 1.39980 0.86322 0.79281 0.77698 0.83622 1.21453 1.21583 1.20517 1.20760 0.96573 0.90150 0.87949 1.22183 0.95426 1.00445 0.99161 1.74985 1.02696 1.17028 1.15223 0.90422 0.89029 0.90435 0.90184 0.88900 0.91218 0.91234 0.88900 0.90195 0.75221 0.91094 0.90923 0.91002 0.92090 0.93259 0.96488 0.92856 0.93669 0.96413 0.89384 0.92966 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 7.90 37.16 0.29 -0.29 16 2 C 0.18 1.01 1.30 -131.82 -0.17 0.84 16 3 C -0.16 -0.72 8.66 37.16 0.32 -0.40 16 4 C -0.16 -0.71 8.67 37.16 0.32 -0.38 16 5 N -0.13 -1.28 3.72 0.53 0.00 -1.27 16 6 N -0.05 -0.64 12.21 60.35 0.74 0.10 16 7 N -0.25 -3.38 12.26 32.10 0.39 -2.98 16 8 C 0.13 1.77 8.14 -156.24 -1.27 0.50 16 9 C 0.61 9.09 7.84 -12.26 -0.10 9.00 16 10 O -0.51 -9.01 17.10 5.34 0.09 -8.92 16 11 N -0.70 -9.31 5.27 -61.20 -0.32 -9.63 16 12 C 0.12 1.74 5.06 -4.04 -0.02 1.72 16 13 C -0.09 -1.42 2.19 -90.57 -0.20 -1.62 16 14 C -0.13 -2.14 5.25 -26.61 -0.14 -2.28 16 15 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 16 N -0.59 -14.69 2.99 -172.33 -0.52 -15.21 16 17 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 18 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.03 4.92 -17.44 -0.09 -0.06 16 20 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 21 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 26 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 27 N -0.25 -3.15 11.85 32.11 0.38 -2.76 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.41 5.00 7.40 -40.82 -0.30 4.70 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.70 7.15 -51.93 -0.37 0.33 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -33.09 397.32 -7.17 -40.26 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.14 Total: -1.10 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.38 Total: 4.40 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 1.30 Total: -57.34 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.09 -7.17 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.745 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds