Wall clock time and date at job start Tue Mar 31 2020 20:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47083 * 2 1 4 4 C 1.53006 * 109.47530 * 240.00160 * 2 1 3 5 5 N 1.46497 * 109.47399 * 120.00161 * 2 1 3 6 6 N 1.28719 * 125.31530 * 359.97347 * 5 2 1 7 7 N 1.28984 * 108.98786 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25036 * 0.02562 * 7 6 5 9 9 C 1.48003 * 126.70045 * 179.97438 * 8 7 6 10 10 O 1.21532 * 120.00708 * 180.02562 * 9 8 7 11 11 N 1.34781 * 119.99537 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99592 * 179.72262 * 11 9 8 13 13 C 1.52998 * 109.46929 * 180.27145 * 12 11 9 14 14 C 1.53044 * 109.46603 * 295.03064 * 13 12 11 15 15 C 1.53189 * 109.31507 * 178.59866 * 14 13 12 16 16 N 1.46924 * 108.76511 * 54.65520 * 15 14 13 17 17 C 1.36940 * 120.63304 * 126.35801 * 16 15 14 18 18 H 1.08006 * 119.99529 * 331.86374 * 17 16 15 19 19 C 1.38807 * 120.00038 * 151.86250 * 17 16 15 20 20 N 1.31611 * 120.00453 * 343.06570 * 19 17 16 21 21 Si 1.86806 * 120.00009 * 163.07030 * 19 17 16 22 22 H 1.48501 * 109.47167 * 89.99832 * 21 19 17 23 23 H 1.48497 * 109.47294 * 209.99985 * 21 19 17 24 24 H 1.48502 * 109.46930 * 330.00055 * 21 19 17 25 25 C 1.46925 * 118.74173 * 306.38735 * 16 15 14 26 26 C 1.53045 * 109.46200 * 174.97312 * 13 12 11 27 27 N 1.28868 * 125.32154 * 180.29357 * 5 2 1 28 28 H 1.08998 * 109.47234 * 300.00081 * 1 2 3 29 29 H 1.09004 * 109.47230 * 60.00143 * 1 2 3 30 30 H 1.08998 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46824 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46970 * 300.00016 * 3 2 1 33 33 H 1.08998 * 109.47152 * 59.99869 * 3 2 1 34 34 H 1.09002 * 109.46673 * 300.00350 * 4 2 1 35 35 H 1.09004 * 109.47112 * 59.99624 * 4 2 1 36 36 H 1.08991 * 109.47303 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00738 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.47270 * 300.27506 * 12 11 9 39 39 H 1.09000 * 109.46868 * 60.27763 * 12 11 9 40 40 H 1.09006 * 109.46170 * 55.00712 * 13 12 11 41 41 H 1.09000 * 109.49601 * 298.56747 * 14 13 12 42 42 H 1.08997 * 109.49569 * 58.65886 * 14 13 12 43 43 H 1.08993 * 109.59879 * 294.86944 * 15 14 13 44 44 H 1.08999 * 109.70001 * 174.49987 * 15 14 13 45 45 H 0.96996 * 120.00735 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.58363 * 293.82055 * 25 16 15 47 47 H 1.08997 * 109.70751 * 173.46889 * 25 16 15 48 48 H 1.08998 * 109.49555 * 301.34463 * 26 13 12 49 49 H 1.09000 * 109.49637 * 61.43419 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2762 -1.2161 2.1071 7 7 2.0307 -1.7388 3.0133 8 6 3.3029 -1.5251 2.6437 9 6 4.5190 -1.9460 3.3748 10 8 5.6182 -1.6863 2.9262 11 7 4.4073 -2.6175 4.5381 12 6 5.6110 -3.0395 5.2587 13 6 5.2078 -3.7822 6.5341 14 6 4.4864 -2.8184 7.4790 15 6 4.0534 -3.5737 8.7394 16 7 5.2312 -4.2263 9.3274 17 6 5.5603 -4.0202 10.6406 18 1 5.2882 -3.0948 11.1266 19 6 6.2435 -5.0005 11.3470 20 7 6.2858 -6.2334 10.8884 21 14 7.1030 -4.5699 12.9487 22 1 6.1621 -4.7595 14.0819 23 1 8.2821 -5.4540 13.1311 24 1 7.5480 -3.1537 12.9064 25 6 6.0497 -5.1037 8.4795 26 6 6.4599 -4.3314 7.2218 27 7 3.2581 -0.8619 1.5036 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 3.5300 -2.8245 4.8964 38 1 6.2012 -3.7007 4.6243 39 1 6.2037 -2.1629 5.5206 40 1 4.5423 -4.6070 6.2790 41 1 5.1596 -2.0066 7.7543 42 1 3.6077 -2.4096 6.9803 43 1 3.3110 -4.3274 8.4771 44 1 3.6262 -2.8745 9.4583 45 1 6.7629 -6.9185 11.3822 46 1 5.4700 -5.9822 8.1959 47 1 6.9410 -5.4145 9.0245 48 1 6.9860 -4.9995 6.5399 49 1 7.1145 -3.5053 7.4995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597294186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:53 Heat of formation + Delta-G solvation = 80.214999 kcal Electronic energy + Delta-G solvation = -28953.608024 eV Core-core repulsion = 24953.332608 eV Total energy + Delta-G solvation = -4000.275416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.61379 -40.96982 -39.35992 -38.61491 -36.54502 -34.80926 -34.52146 -33.59487 -32.48108 -31.38768 -28.95464 -28.53607 -28.46876 -26.66184 -25.63922 -25.22630 -23.80977 -22.70565 -22.18012 -21.61875 -20.71773 -19.25043 -18.60680 -18.56010 -17.73890 -17.23455 -16.81837 -16.49475 -15.76465 -15.53741 -15.28898 -15.27167 -15.24737 -15.09505 -14.94244 -14.71944 -14.10249 -13.98407 -13.85915 -13.51612 -13.42467 -13.28587 -13.22764 -12.98156 -12.84804 -12.82750 -12.64191 -12.54328 -12.36921 -12.25706 -12.12173 -12.11546 -12.01717 -11.82161 -11.72000 -11.57800 -11.48787 -11.15379 -11.09107 -10.51484 -10.27450 -8.64134 -7.85317 -5.29884 -0.17912 0.23870 0.63200 1.46843 1.48658 1.58195 1.66444 1.85496 2.52888 2.78213 2.94566 3.29100 3.48483 3.56605 3.63990 3.73023 3.82167 3.93760 3.99452 4.09225 4.29169 4.41274 4.51947 4.52666 4.56647 4.58867 4.60591 4.68891 4.72979 4.73171 4.74227 4.80204 4.96157 5.02280 5.02302 5.11123 5.12426 5.17336 5.21241 5.22401 5.30773 5.32518 5.44673 5.57537 5.68433 5.82079 6.18438 6.42299 6.79523 7.02682 7.18218 7.90563 8.41289 9.20873 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.001905 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.144399 B =14697.703710 C =14999.732770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.058 5.058 7 N -0.267 5.267 8 C 0.113 3.887 9 C 0.617 3.383 10 O -0.545 6.545 11 N -0.688 5.688 12 C 0.135 3.865 13 C -0.079 4.079 14 C -0.117 4.117 15 C 0.140 3.860 16 N -0.612 5.612 17 C -0.261 4.261 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.272 1.272 25 C 0.176 3.824 26 C -0.121 4.121 27 N -0.258 5.258 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.063 0.937 37 H 0.419 0.581 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.017 0.983 44 H 0.050 0.950 45 H 0.249 0.751 46 H -0.002 1.002 47 H 0.052 0.948 48 H 0.073 0.927 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.241 14.263 -27.818 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.216 4.216 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.050 5.050 7 N -0.141 5.141 8 C -0.171 4.171 9 C 0.398 3.602 10 O -0.419 6.419 11 N -0.340 5.340 12 C 0.013 3.987 13 C -0.098 4.098 14 C -0.156 4.156 15 C 0.015 3.985 16 N -0.336 5.336 17 C -0.391 4.391 18 H 0.081 0.919 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.197 1.197 25 C 0.050 3.950 26 C -0.160 4.160 27 N -0.112 5.112 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.257 0.743 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.016 0.984 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.994 14.396 -28.170 33.833 hybrid contribution 0.684 -0.511 1.612 1.824 sum -11.310 13.886 -26.558 32.032 Atomic orbital electron populations 1.22183 0.87938 1.04792 1.05910 1.22229 0.98077 0.93387 0.78245 1.22315 1.02548 0.91046 1.05695 1.22311 1.02544 1.01158 0.95554 1.51334 1.00028 1.32828 1.18366 1.78823 1.21499 1.09010 0.95660 1.76125 0.99833 1.18117 1.20042 1.25174 0.94516 1.03274 0.94095 1.16172 0.84453 0.78643 0.80976 1.90829 1.26489 1.56531 1.68071 1.45708 1.12127 1.55153 1.20994 1.21540 0.85759 0.99344 0.92101 1.21172 0.97887 0.97916 0.92860 1.21946 1.00135 0.97610 0.95874 1.21056 0.88589 0.94640 0.94263 1.44336 1.27174 1.54658 1.07386 1.19485 1.33016 0.98376 0.88220 0.91852 1.25773 1.03313 0.94578 1.01071 1.70170 1.45691 1.00892 1.41315 0.85323 0.77912 0.77545 0.79944 1.21200 1.21869 1.19691 1.20584 0.94661 0.90260 0.89450 1.21971 0.96693 1.00065 0.97290 1.74950 1.04064 1.17125 1.15045 0.91186 0.85459 0.91143 0.91776 0.85257 0.91988 0.91932 0.85265 0.91774 0.74344 0.90391 0.91100 0.90371 0.92696 0.90218 0.96518 0.93106 0.94153 0.98378 0.92930 0.90831 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.90 71.98 0.57 -0.18 16 2 C 0.16 1.50 1.30 3.61 0.00 1.50 16 3 C -0.16 -1.06 8.66 71.98 0.62 -0.44 16 4 C -0.16 -1.03 8.67 71.98 0.62 -0.41 16 5 N -0.11 -2.09 3.72 -152.25 -0.57 -2.66 16 6 N -0.06 -1.29 12.21 37.02 0.45 -0.84 16 7 N -0.27 -6.84 12.26 -52.36 -0.64 -7.48 16 8 C 0.11 3.05 8.14 137.15 1.12 4.17 16 9 C 0.62 17.76 7.84 86.83 0.68 18.44 16 10 O -0.54 -18.83 17.10 -3.82 -0.07 -18.89 16 11 N -0.69 -17.17 5.27 -465.82 -2.45 -19.62 16 12 C 0.14 3.54 5.06 86.38 0.44 3.98 16 13 C -0.08 -2.36 2.19 -10.76 -0.02 -2.38 16 14 C -0.12 -3.68 5.25 30.67 0.16 -3.52 16 15 C 0.14 5.68 6.52 86.36 0.56 6.24 16 16 N -0.61 -30.68 2.99 -699.12 -2.09 -32.77 16 17 C -0.26 -14.48 9.58 84.03 0.81 -13.67 16 18 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 19 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 20 N -0.93 -55.69 11.19 21.65 0.24 -55.45 16 21 Si 0.96 45.41 29.59 68.60 2.03 47.44 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.18 8.40 5.30 86.36 0.46 8.85 16 26 C -0.12 -4.31 5.36 30.67 0.16 -4.15 16 27 N -0.26 -6.43 11.85 -52.32 -0.62 -7.05 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.13 -0.27 8.14 -2.38 -0.02 -0.28 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.13 -0.08 8.14 -2.38 -0.02 -0.10 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.42 9.32 7.40 -92.71 -0.69 8.64 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 2.05 7.15 -2.39 -0.02 2.04 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 47 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 48 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -73.65 397.32 3.14 -70.51 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.26 Total: 10.93 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.60 Total: 15.90 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -5.68 Total: -125.88 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.07 Total: -18.89 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.65 3.14 -70.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.722 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds