Wall clock time and date at job start Tue Mar 31 2020 20:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 C 1.53004 * 109.46966 * 240.00233 * 2 1 3 5 5 N 1.46494 * 109.46876 * 120.00345 * 2 1 3 6 6 N 1.28724 * 125.32160 * 239.95457 * 5 2 1 7 7 N 1.28978 * 108.99002 * 179.76283 * 6 5 2 8 8 C 1.34182 * 107.25169 * 0.43124 * 7 6 5 9 9 C 1.48008 * 126.69908 * 179.83252 * 8 7 6 10 10 O 1.21533 * 120.00284 * 179.68899 * 9 8 7 11 11 N 1.34780 * 119.99724 * 359.69400 * 9 8 7 12 12 C 1.46499 * 120.00025 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47518 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.49800 * 54.93460 * 13 12 11 15 15 C 1.53036 * 109.50157 * 175.00309 * 13 12 11 16 16 C 1.53044 * 109.52749 * 181.35592 * 15 13 12 17 17 C 1.53192 * 109.31046 * 298.61139 * 16 15 13 18 18 N 1.46927 * 108.76281 * 54.65769 * 17 16 15 19 19 C 1.36940 * 120.62630 * 126.40213 * 18 17 16 20 20 H 1.07996 * 120.00611 * 331.81961 * 19 18 17 21 21 C 1.38814 * 119.99647 * 151.82017 * 19 18 17 22 22 N 1.31613 * 120.00261 * 343.08217 * 21 19 18 23 23 Si 1.86804 * 119.99792 * 163.07950 * 21 19 18 24 24 H 1.48492 * 109.47162 * 60.00081 * 23 21 19 25 25 H 1.48498 * 109.46674 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47156 * 299.99898 * 23 21 19 27 27 C 1.46926 * 118.74028 * 306.38050 * 18 17 16 28 28 N 1.28867 * 125.32487 * 60.00145 * 5 2 1 29 29 H 1.09001 * 109.46812 * 300.00337 * 1 2 3 30 30 H 1.09006 * 109.46906 * 59.99722 * 1 2 3 31 31 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46899 * 300.00426 * 3 2 1 34 34 H 1.09004 * 109.46946 * 59.99721 * 3 2 1 35 35 H 1.08998 * 109.46996 * 300.00178 * 4 2 1 36 36 H 1.08996 * 109.47046 * 59.99774 * 4 2 1 37 37 H 1.09000 * 109.47048 * 180.02562 * 4 2 1 38 38 H 0.96999 * 120.00138 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47143 * 60.00007 * 12 11 9 40 40 H 1.08998 * 109.47336 * 300.00431 * 12 11 9 41 41 H 1.08998 * 109.46090 * 301.36954 * 15 13 12 42 42 H 1.08997 * 109.45972 * 61.33813 * 15 13 12 43 43 H 1.08997 * 109.49458 * 58.57862 * 16 15 13 44 44 H 1.08997 * 109.49484 * 178.67602 * 16 15 13 45 45 H 1.08992 * 109.59831 * 294.86863 * 17 16 15 46 46 H 1.09008 * 109.69717 * 174.50409 * 17 16 15 47 47 H 0.97004 * 120.00436 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.58228 * 293.81945 * 27 18 17 49 49 H 1.09000 * 109.69948 * 173.46799 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.7621 -0.1666 2.1066 7 7 2.9993 -1.0508 3.0151 8 6 2.3784 -2.1805 2.6427 9 6 2.3710 -3.4678 3.3731 10 8 1.7597 -4.4176 2.9244 11 7 3.0420 -3.5867 4.5359 12 6 3.0343 -4.8606 5.2592 13 6 3.8647 -4.7267 6.5371 14 1 3.4924 -3.8892 7.1269 15 6 3.7556 -6.0157 7.3547 16 6 4.5587 -5.8699 8.6493 17 6 6.0338 -5.6384 8.3070 18 7 6.1336 -4.4851 7.4021 19 6 6.9585 -3.4336 7.7005 20 1 7.1822 -3.1980 8.7305 21 6 7.5071 -2.6703 6.6791 22 7 7.5199 -3.1319 5.4466 23 14 8.2273 -0.9879 7.0538 24 1 9.3366 -1.1307 8.0305 25 1 8.7448 -0.3810 5.8013 26 1 7.1722 -0.1144 7.6274 27 6 5.3319 -4.4818 6.1708 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 3.5301 -2.8287 4.8939 39 1 3.4617 -5.6396 4.6276 40 1 2.0091 -5.1250 5.5185 41 1 2.7096 -6.2054 7.5957 42 1 4.1512 -6.8489 6.7738 43 1 4.1796 -5.0215 9.2190 44 1 4.4614 -6.7794 9.2421 45 1 6.4387 -6.5236 7.8167 46 1 6.5954 -5.4368 9.2193 47 1 7.9029 -2.5984 4.7328 48 1 5.6797 -5.2728 5.5064 49 1 5.4281 -3.5172 5.6724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598687647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:34 Heat of formation + Delta-G solvation = 102.516734 kcal Electronic energy + Delta-G solvation = -29768.335235 eV Core-core repulsion = 25769.026895 eV Total energy + Delta-G solvation = -3999.308340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.45110 -39.51555 -37.95197 -37.65735 -34.77102 -33.55537 -33.06682 -32.52619 -30.83932 -29.78557 -28.09225 -28.03671 -26.40309 -25.25767 -24.60228 -24.18608 -22.13248 -21.04870 -20.90360 -20.44238 -19.10135 -17.91677 -17.45089 -16.93914 -16.63051 -15.82708 -15.28423 -14.84338 -14.70278 -14.47337 -14.17784 -14.03537 -13.88528 -13.59239 -13.40004 -13.34485 -12.97950 -12.86511 -12.83437 -12.32605 -12.30580 -12.27309 -12.21523 -12.15753 -11.95148 -11.58568 -11.23285 -11.07626 -11.03193 -10.96265 -10.67119 -10.48643 -10.40008 -10.23252 -10.18468 -10.17199 -9.87621 -9.57651 -9.41708 -8.84108 -8.43971 -6.63893 -5.75718 -3.18696 0.99868 1.52065 1.56237 2.95967 3.24060 3.42031 3.48977 3.49441 3.77330 4.04488 4.10399 4.16392 4.52710 4.55704 4.93915 4.94971 4.97149 5.12045 5.15171 5.16896 5.18564 5.27443 5.36417 5.47316 5.54484 5.57374 5.59007 5.60742 5.62050 5.76323 5.80388 5.94907 6.02630 6.09588 6.28764 6.30960 6.39253 6.50765 6.62718 6.67257 6.82794 6.87105 7.03554 7.33277 7.58575 7.64753 7.82221 8.13715 8.27763 8.47394 9.24040 9.87355 10.44471 11.32208 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003199 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.176994 B = 8750.381787 C =10591.807558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 C -0.154 4.154 4 C -0.161 4.161 5 N -0.129 5.129 6 N -0.056 5.056 7 N -0.247 5.247 8 C 0.130 3.870 9 C 0.615 3.385 10 O -0.520 6.520 11 N -0.692 5.692 12 C 0.131 3.869 13 C -0.129 4.129 14 H 0.072 0.928 15 C -0.099 4.099 16 C -0.133 4.133 17 C 0.143 3.857 18 N -0.592 5.592 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.178 3.822 28 N -0.249 5.249 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 5.530 -11.003 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.219 4.219 5 N -0.043 5.043 6 N -0.048 5.048 7 N -0.122 5.122 8 C -0.155 4.155 9 C 0.394 3.606 10 O -0.393 6.393 11 N -0.344 5.344 12 C 0.008 3.992 13 C -0.150 4.150 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.017 3.983 18 N -0.314 5.314 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.051 3.949 28 N -0.102 5.102 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.817 5.513 -11.584 19.599 hybrid contribution 0.604 0.816 0.322 1.065 sum -14.213 6.329 -11.263 19.207 Atomic orbital electron populations 1.22254 0.90691 1.04741 1.04103 1.21485 0.96278 0.93126 0.79485 1.22111 1.03412 0.91299 1.04348 1.22264 1.02684 1.02089 0.94881 1.50739 1.29897 1.05484 1.18220 1.78917 1.08359 1.22138 0.95435 1.76244 1.18786 0.98103 1.19046 1.25374 0.99466 0.97304 0.93309 1.16086 0.80355 0.83189 0.80952 1.90814 1.43683 1.37554 1.67297 1.45798 1.50640 1.16572 1.21429 1.21552 1.00148 0.84154 0.93339 1.22172 1.00160 0.98623 0.94022 0.90930 1.21329 0.98754 0.96968 0.96713 1.21991 0.98647 1.00133 0.96442 1.20929 0.92707 0.90519 0.94154 1.44007 1.47670 1.17499 1.22212 1.19125 1.22131 1.05277 0.91985 0.91778 1.25023 0.98525 0.99738 0.96042 1.70006 1.48020 1.36370 1.00005 0.86412 0.78983 0.84629 0.77013 1.21000 1.21632 1.20892 1.20817 0.84052 1.01851 0.88140 1.74942 1.21149 0.98845 1.15240 0.91296 0.89042 0.90236 0.90373 0.89165 0.90466 0.90217 0.89041 0.91166 0.74642 0.91055 0.91658 0.93329 0.92389 0.92390 0.93066 0.96542 0.92929 0.93561 0.96284 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.66 37.16 0.32 -0.68 16 2 C 0.18 1.43 1.30 -131.82 -0.17 1.26 16 3 C -0.15 -0.96 7.90 37.16 0.29 -0.66 16 4 C -0.16 -1.09 8.66 37.16 0.32 -0.76 16 5 N -0.13 -1.68 3.72 0.52 0.00 -1.67 16 6 N -0.06 -0.84 12.21 60.35 0.74 -0.11 16 7 N -0.25 -4.30 12.26 32.10 0.39 -3.91 16 8 C 0.13 2.24 8.14 -156.25 -1.27 0.97 16 9 C 0.61 11.10 7.84 -12.25 -0.10 11.01 16 10 O -0.52 -10.36 17.10 5.34 0.09 -10.27 16 11 N -0.69 -11.99 5.33 -61.20 -0.33 -12.31 16 12 C 0.13 2.18 5.07 -4.04 -0.02 2.16 16 13 C -0.13 -2.33 2.37 -90.50 -0.21 -2.54 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 16 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 17 C 0.14 2.98 6.52 -3.71 -0.02 2.95 16 18 N -0.59 -14.59 2.99 -172.32 -0.52 -15.10 16 19 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 20 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 21 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 22 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 23 Si 0.90 21.77 29.59 -169.99 -5.03 16.75 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.18 4.07 4.39 -3.71 -0.02 4.05 16 28 N -0.25 -3.86 11.85 32.11 0.38 -3.48 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.42 7.40 7.45 -40.82 -0.30 7.09 16 39 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.07 7.93 -51.92 -0.41 0.66 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 2.25 5.27 -51.93 -0.27 1.98 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -32.83 397.55 -7.21 -40.04 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.15 Total: 2.77 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.41 Total: 6.56 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 1.29 Total: -61.85 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.83 -7.21 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.558 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds