Wall clock time and date at job start Tue Mar 31 2020 20:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 C 1.53004 * 109.46966 * 240.00233 * 2 1 3 5 5 N 1.46494 * 109.46876 * 120.00345 * 2 1 3 6 6 N 1.28724 * 125.32160 * 239.95457 * 5 2 1 7 7 N 1.28978 * 108.99002 * 179.76283 * 6 5 2 8 8 C 1.34182 * 107.25169 * 0.43124 * 7 6 5 9 9 C 1.48008 * 126.69908 * 179.83252 * 8 7 6 10 10 O 1.21533 * 120.00284 * 179.68899 * 9 8 7 11 11 N 1.34780 * 119.99724 * 359.69400 * 9 8 7 12 12 C 1.46499 * 120.00025 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47518 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.49800 * 54.93460 * 13 12 11 15 15 C 1.53036 * 109.50157 * 175.00309 * 13 12 11 16 16 C 1.53044 * 109.52749 * 181.35592 * 15 13 12 17 17 C 1.53192 * 109.31046 * 298.61139 * 16 15 13 18 18 N 1.46927 * 108.76281 * 54.65769 * 17 16 15 19 19 C 1.36940 * 120.62630 * 126.40213 * 18 17 16 20 20 H 1.07996 * 120.00611 * 331.81961 * 19 18 17 21 21 C 1.38814 * 119.99647 * 151.82017 * 19 18 17 22 22 N 1.31613 * 120.00261 * 343.08217 * 21 19 18 23 23 Si 1.86804 * 119.99792 * 163.07950 * 21 19 18 24 24 H 1.48492 * 109.47162 * 60.00081 * 23 21 19 25 25 H 1.48498 * 109.46674 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47156 * 299.99898 * 23 21 19 27 27 C 1.46926 * 118.74028 * 306.38050 * 18 17 16 28 28 N 1.28867 * 125.32487 * 60.00145 * 5 2 1 29 29 H 1.09001 * 109.46812 * 300.00337 * 1 2 3 30 30 H 1.09006 * 109.46906 * 59.99722 * 1 2 3 31 31 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47350 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46899 * 300.00426 * 3 2 1 34 34 H 1.09004 * 109.46946 * 59.99721 * 3 2 1 35 35 H 1.08998 * 109.46996 * 300.00178 * 4 2 1 36 36 H 1.08996 * 109.47046 * 59.99774 * 4 2 1 37 37 H 1.09000 * 109.47048 * 180.02562 * 4 2 1 38 38 H 0.96999 * 120.00138 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47143 * 60.00007 * 12 11 9 40 40 H 1.08998 * 109.47336 * 300.00431 * 12 11 9 41 41 H 1.08998 * 109.46090 * 301.36954 * 15 13 12 42 42 H 1.08997 * 109.45972 * 61.33813 * 15 13 12 43 43 H 1.08997 * 109.49458 * 58.57862 * 16 15 13 44 44 H 1.08997 * 109.49484 * 178.67602 * 16 15 13 45 45 H 1.08992 * 109.59831 * 294.86863 * 17 16 15 46 46 H 1.09008 * 109.69717 * 174.50409 * 17 16 15 47 47 H 0.97004 * 120.00436 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.58228 * 293.81945 * 27 18 17 49 49 H 1.09000 * 109.69948 * 173.46799 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.7621 -0.1666 2.1066 7 7 2.9993 -1.0508 3.0151 8 6 2.3784 -2.1805 2.6427 9 6 2.3710 -3.4678 3.3731 10 8 1.7597 -4.4176 2.9244 11 7 3.0420 -3.5867 4.5359 12 6 3.0343 -4.8606 5.2592 13 6 3.8647 -4.7267 6.5371 14 1 3.4924 -3.8892 7.1269 15 6 3.7556 -6.0157 7.3547 16 6 4.5587 -5.8699 8.6493 17 6 6.0338 -5.6384 8.3070 18 7 6.1336 -4.4851 7.4021 19 6 6.9585 -3.4336 7.7005 20 1 7.1822 -3.1980 8.7305 21 6 7.5071 -2.6703 6.6791 22 7 7.5199 -3.1319 5.4466 23 14 8.2273 -0.9879 7.0538 24 1 9.3366 -1.1307 8.0305 25 1 8.7448 -0.3810 5.8013 26 1 7.1722 -0.1144 7.6274 27 6 5.3319 -4.4818 6.1708 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 3.5301 -2.8287 4.8939 39 1 3.4617 -5.6396 4.6276 40 1 2.0091 -5.1250 5.5185 41 1 2.7096 -6.2054 7.5957 42 1 4.1512 -6.8489 6.7738 43 1 4.1796 -5.0215 9.2190 44 1 4.4614 -6.7794 9.2421 45 1 6.4387 -6.5236 7.8167 46 1 6.5954 -5.4368 9.2193 47 1 7.9029 -2.5984 4.7328 48 1 5.6797 -5.2728 5.5064 49 1 5.4281 -3.5172 5.6724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598687647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:33 Heat of formation + Delta-G solvation = 80.286927 kcal Electronic energy + Delta-G solvation = -29769.299192 eV Core-core repulsion = 25769.026895 eV Total energy + Delta-G solvation = -4000.272297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.63199 -40.94446 -39.34040 -38.63850 -36.31441 -34.90584 -34.66017 -33.70926 -32.48031 -31.51777 -28.70651 -28.55231 -27.76734 -27.16288 -25.69839 -25.52662 -23.84595 -22.50811 -22.14606 -21.62264 -20.66438 -19.16570 -18.65916 -18.57613 -17.75819 -17.26086 -16.93042 -16.41708 -15.79932 -15.58589 -15.32623 -15.29393 -15.17854 -15.09856 -14.95049 -14.51671 -14.08635 -13.99750 -13.78524 -13.68523 -13.48374 -13.30355 -13.24809 -12.92231 -12.87185 -12.85258 -12.66818 -12.51220 -12.37455 -12.24963 -12.14354 -12.13210 -12.00247 -11.77987 -11.71051 -11.52630 -11.50455 -11.17705 -11.07229 -10.51632 -10.25219 -8.63678 -7.84335 -5.29750 -0.20385 0.22097 0.63096 1.47071 1.50776 1.56306 1.67812 1.85164 2.53010 2.78084 2.92624 3.29354 3.46628 3.53802 3.60449 3.63570 3.95199 4.00929 4.09685 4.16253 4.26583 4.38325 4.39564 4.50833 4.53457 4.57039 4.58661 4.63630 4.70126 4.70681 4.81630 4.87009 4.91168 4.99880 5.05805 5.09277 5.12715 5.15950 5.19302 5.19457 5.32659 5.41286 5.45953 5.58769 5.69013 5.81205 6.16198 6.41473 6.75222 7.01080 7.18207 7.90176 8.41466 9.20300 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003199 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.176994 B = 8750.381787 C =10591.807558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.151 4.151 4 C -0.158 4.158 5 N -0.108 5.108 6 N -0.061 5.061 7 N -0.274 5.274 8 C 0.111 3.889 9 C 0.617 3.383 10 O -0.542 6.542 11 N -0.691 5.691 12 C 0.136 3.864 13 C -0.113 4.113 14 H 0.071 0.929 15 C -0.097 4.097 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.263 4.263 20 H 0.065 0.935 21 C -0.043 4.043 22 N -0.929 5.929 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.277 1.277 27 C 0.187 3.813 28 N -0.252 5.252 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.057 0.943 38 H 0.414 0.586 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.011 0.989 46 H 0.051 0.949 47 H 0.247 0.753 48 H -0.010 1.010 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 6.230 -11.256 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.079 3.921 3 C -0.209 4.209 4 C -0.216 4.216 5 N -0.025 5.025 6 N -0.053 5.053 7 N -0.148 5.148 8 C -0.172 4.172 9 C 0.398 3.602 10 O -0.418 6.418 11 N -0.342 5.342 12 C 0.013 3.987 13 C -0.134 4.134 14 H 0.090 0.910 15 C -0.135 4.135 16 C -0.161 4.161 17 C 0.010 3.990 18 N -0.334 5.334 19 C -0.393 4.393 20 H 0.083 0.917 21 C -0.239 4.239 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.203 1.203 27 C 0.061 3.939 28 N -0.106 5.106 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.076 0.924 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.029 0.971 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.008 0.992 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.751 6.208 -11.799 21.409 hybrid contribution 1.208 0.616 0.316 1.393 sum -15.543 6.824 -11.483 20.494 Atomic orbital electron populations 1.22304 0.88851 1.04381 1.05794 1.22281 0.97753 0.93960 0.78152 1.22187 1.02641 0.90041 1.05995 1.22321 1.01907 1.01713 0.95664 1.51399 1.27990 1.04693 1.18446 1.78830 1.08923 1.21836 0.95735 1.76200 1.19765 0.98489 1.20315 1.25227 1.00656 0.97195 0.94134 1.16150 0.79917 0.83307 0.80869 1.90785 1.44770 1.38350 1.67856 1.45839 1.50228 1.16712 1.21383 1.21558 1.01095 0.83633 0.92378 1.21935 0.96498 0.99991 0.94945 0.91031 1.21357 1.00852 0.95463 0.95858 1.21874 0.95332 1.01692 0.97176 1.21128 0.95814 0.88861 0.93170 1.44311 1.47818 1.18286 1.23033 1.19439 1.21849 1.06011 0.92031 0.91731 1.25689 0.99557 1.02739 0.95947 1.70167 1.49413 1.37264 1.00654 0.85477 0.78470 0.80905 0.76456 1.20203 1.22394 1.20290 1.20593 0.87016 0.99154 0.87166 1.74902 1.21066 1.00028 1.14643 0.91912 0.85010 0.91599 0.91645 0.85127 0.91169 0.91632 0.84923 0.92418 0.75000 0.91757 0.89170 0.89710 0.92332 0.92497 0.89694 0.97123 0.93090 0.94369 0.99242 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.66 71.98 0.62 -0.98 16 2 C 0.16 2.29 1.30 3.61 0.00 2.29 16 3 C -0.15 -1.56 7.90 71.98 0.57 -0.99 16 4 C -0.16 -1.84 8.66 71.98 0.62 -1.22 16 5 N -0.11 -2.80 3.72 -152.26 -0.57 -3.37 16 6 N -0.06 -1.88 12.21 37.02 0.45 -1.43 16 7 N -0.27 -9.85 12.26 -52.37 -0.64 -10.49 16 8 C 0.11 3.97 8.14 137.15 1.12 5.08 16 9 C 0.62 22.83 7.84 86.83 0.68 23.51 16 10 O -0.54 -21.84 17.10 -3.82 -0.07 -21.91 16 11 N -0.69 -24.45 5.33 -465.81 -2.48 -26.94 16 12 C 0.14 4.45 5.07 86.38 0.44 4.88 16 13 C -0.11 -4.00 2.37 -10.72 -0.03 -4.03 16 14 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 15 C -0.10 -2.90 5.17 30.62 0.16 -2.74 16 16 C -0.12 -3.82 6.08 30.67 0.19 -3.63 16 17 C 0.14 5.55 6.52 86.36 0.56 6.12 16 18 N -0.61 -30.56 2.99 -699.09 -2.09 -32.65 16 19 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 20 H 0.06 3.48 7.88 -2.91 -0.02 3.46 16 21 C -0.04 -2.44 4.92 84.86 0.42 -2.03 16 22 N -0.93 -55.42 11.19 21.65 0.24 -55.17 16 23 Si 0.96 45.61 29.59 68.60 2.03 47.64 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C 0.19 8.79 4.39 86.36 0.38 9.17 16 28 N -0.25 -7.93 11.85 -52.32 -0.62 -8.55 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.41 15.31 7.45 -92.71 -0.69 14.62 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.06 3.12 5.27 -2.39 -0.01 3.11 16 Total: -1.00 -74.15 397.55 3.05 -71.10 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.25 Total: 20.04 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.54 Total: 21.74 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -5.71 Total: -138.61 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.07 Total: -21.91 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.15 3.05 -71.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.385 kcal (2) G-P(sol) polarization free energy of solvation -74.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds