Wall clock time and date at job start Tue Mar 31 2020 20:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 C 1.52999 * 109.47297 * 120.00362 * 2 1 3 5 5 N 1.46502 * 109.46706 * 240.00460 * 2 1 3 6 6 N 1.28718 * 125.32456 * 0.02562 * 5 2 1 7 7 N 1.28981 * 108.98867 * 179.97438 * 6 5 2 8 8 C 1.34183 * 107.25494 * 0.02562 * 7 6 5 9 9 C 1.48007 * 126.70243 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00161 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99572 * 359.97386 * 9 8 7 12 12 C 1.46499 * 119.99642 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46935 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.49991 * 305.06410 * 13 12 11 15 15 C 1.53043 * 109.49885 * 184.99924 * 13 12 11 16 16 C 1.53040 * 109.53951 * 178.67980 * 15 13 12 17 17 C 1.53190 * 109.30953 * 61.36749 * 16 15 13 18 18 N 1.46927 * 108.77658 * 305.36386 * 17 16 15 19 19 C 1.36941 * 120.62743 * 233.58750 * 18 17 16 20 20 H 1.08003 * 119.99502 * 152.80177 * 19 18 17 21 21 C 1.38803 * 120.00117 * 332.79841 * 19 18 17 22 22 N 1.31627 * 119.99695 * 159.75583 * 21 19 18 23 23 Si 1.86799 * 120.00502 * 339.75603 * 21 19 18 24 24 H 1.48492 * 109.47422 * 94.89012 * 23 21 19 25 25 H 1.48503 * 109.47244 * 214.89742 * 23 21 19 26 26 H 1.48504 * 109.46823 * 334.89380 * 23 21 19 27 27 C 1.46929 * 118.73729 * 53.60976 * 18 17 16 28 28 N 1.28875 * 125.31730 * 179.72049 * 5 2 1 29 29 H 1.09005 * 109.47482 * 59.99610 * 1 2 3 30 30 H 1.09007 * 109.47252 * 299.99739 * 1 2 3 31 31 H 1.09002 * 109.47702 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47096 * 60.00506 * 3 2 1 33 33 H 1.09008 * 109.47061 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47714 * 300.00232 * 3 2 1 35 35 H 1.09002 * 109.46574 * 59.99518 * 4 2 1 36 36 H 1.09000 * 109.47343 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47122 * 300.00212 * 4 2 1 38 38 H 0.96996 * 120.00513 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.47188 * 299.99718 * 12 11 9 40 40 H 1.08995 * 109.47550 * 60.00467 * 12 11 9 41 41 H 1.09003 * 109.46155 * 298.70407 * 15 13 12 42 42 H 1.09004 * 109.45903 * 58.67474 * 15 13 12 43 43 H 1.08999 * 109.49460 * 181.31901 * 16 15 13 44 44 H 1.08997 * 109.49820 * 301.38073 * 16 15 13 45 45 H 1.09000 * 109.58965 * 65.15521 * 17 16 15 46 46 H 1.09007 * 109.58668 * 185.57645 * 17 16 15 47 47 H 0.97007 * 119.99668 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58167 * 186.60670 * 27 18 17 49 49 H 1.09000 * 109.58622 * 66.18153 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0182 -0.6905 -1.1963 6 7 1.2761 -1.2159 -2.1073 7 7 2.0306 -1.7385 -3.0135 8 6 3.3027 -1.5259 -2.6434 9 6 4.5188 -1.9471 -3.3744 10 8 5.6180 -1.6883 -2.9252 11 7 4.4071 -2.6177 -4.5381 12 6 5.6108 -3.0342 -5.2619 13 6 5.2076 -3.7707 -6.5409 14 1 4.5424 -4.5972 -6.2906 15 6 6.4593 -4.3143 -7.2336 16 6 6.0545 -5.0794 -8.4957 17 6 5.3440 -4.1250 -9.4605 18 7 4.2234 -3.4876 -8.7557 19 6 2.9569 -3.5318 -9.2749 20 1 2.1017 -3.4780 -8.6175 21 6 2.7725 -3.6457 -10.6459 22 7 1.6253 -4.0821 -11.1215 23 14 4.1520 -3.1799 -11.8160 24 1 4.9280 -4.3940 -12.1748 25 1 3.5763 -2.5789 -13.0458 26 1 5.0486 -2.1962 -11.1573 27 6 4.4875 -2.8015 -7.4836 28 7 3.2579 -0.8621 -1.5037 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6765 -1.7490 1.2491 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -0.2076 2.1392 38 1 3.5299 -2.8240 -4.8968 39 1 6.2019 -2.1555 -5.5200 40 1 6.2026 -3.6978 -4.6314 41 1 7.1130 -3.4854 -7.5053 42 1 6.9868 -4.9856 -6.5558 43 1 6.9445 -5.4861 -8.9757 44 1 5.3816 -5.8938 -8.2273 45 1 6.0435 -3.3614 -9.8006 46 1 4.9664 -4.6847 -10.3164 47 1 1.4965 -4.1620 -12.0796 48 1 3.5449 -2.4880 -7.0350 49 1 5.1172 -1.9299 -7.6624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598687648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:39 Heat of formation + Delta-G solvation = 108.432329 kcal Electronic energy + Delta-G solvation = -29319.287243 eV Core-core repulsion = 25320.235423 eV Total energy + Delta-G solvation = -3999.051821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.62264 -39.76799 -38.16563 -37.92100 -35.10683 -33.73197 -33.13505 -32.61025 -30.92752 -30.68866 -28.20403 -28.14154 -26.72818 -25.32208 -24.77668 -24.46248 -22.03258 -21.53354 -21.16268 -20.65552 -19.43598 -18.13611 -17.61443 -17.07457 -16.63210 -16.06141 -15.51713 -15.31293 -14.82586 -14.75682 -14.38866 -14.21167 -14.06646 -13.86824 -13.50595 -13.41023 -13.19609 -13.09218 -12.93548 -12.63247 -12.54942 -12.43895 -12.42419 -12.14180 -12.07072 -11.71189 -11.64651 -11.45914 -11.25011 -11.19932 -10.81255 -10.65429 -10.58092 -10.51882 -10.39175 -10.09740 -9.86104 -9.64207 -9.41897 -9.11964 -8.60211 -6.96027 -5.92418 -3.28587 0.83035 1.32648 1.40707 2.73774 3.01921 3.34004 3.50464 3.53257 3.64106 3.89508 3.93540 4.04762 4.38462 4.55100 4.79812 4.84751 4.85029 4.86193 5.02100 5.05765 5.08136 5.08743 5.15430 5.22418 5.27745 5.35445 5.42923 5.44264 5.50047 5.61689 5.64018 5.75335 5.78946 5.87318 6.01338 6.10123 6.10622 6.26755 6.34440 6.40595 6.56250 6.59908 6.69410 6.72244 6.98003 7.32334 7.91364 7.97794 8.07774 8.34920 8.95963 9.74243 10.11561 11.23445 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.002440 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.694653 B =11472.808933 C =12588.470793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.127 5.127 6 N -0.053 5.053 7 N -0.251 5.251 8 C 0.126 3.874 9 C 0.616 3.384 10 O -0.516 6.516 11 N -0.699 5.699 12 C 0.128 3.872 13 C -0.121 4.121 14 H 0.081 0.919 15 C -0.100 4.100 16 C -0.134 4.134 17 C 0.124 3.876 18 N -0.605 5.605 19 C -0.259 4.259 20 H 0.087 0.913 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.270 1.270 27 C 0.154 3.846 28 N -0.247 5.247 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.415 0.585 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.071 0.929 47 H 0.262 0.738 48 H 0.062 0.938 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 7.272 24.969 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.041 5.041 6 N -0.046 5.046 7 N -0.125 5.125 8 C -0.158 4.158 9 C 0.395 3.605 10 O -0.388 6.388 11 N -0.351 5.351 12 C 0.005 3.995 13 C -0.141 4.141 14 H 0.100 0.900 15 C -0.138 4.138 16 C -0.174 4.174 17 C -0.002 4.002 18 N -0.328 5.328 19 C -0.387 4.387 20 H 0.104 0.896 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.714 3.286 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.195 1.195 27 C 0.028 3.972 28 N -0.100 5.100 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.053 7.512 25.255 26.429 hybrid contribution 0.682 0.077 -1.081 1.280 sum 2.735 7.589 24.175 25.485 Atomic orbital electron populations 1.22119 0.89709 1.04850 1.04531 1.21523 0.96699 0.92858 0.79326 1.22266 1.03506 0.91871 1.04271 1.22261 1.03483 1.01160 0.94947 1.50771 1.00945 1.34309 1.18107 1.78923 1.21535 1.08756 0.95365 1.76216 1.00016 1.17248 1.19038 1.25338 0.94657 1.02279 0.93502 1.16083 0.84564 0.78907 0.80911 1.90835 1.25306 1.55314 1.67354 1.45807 1.12050 1.55873 1.21373 1.21595 0.85825 0.99518 0.92549 1.21976 0.98787 0.99802 0.93552 0.90038 1.21343 0.96071 0.99477 0.96928 1.21997 0.99669 0.99192 0.96496 1.21356 0.89892 0.94022 0.94899 1.44333 1.05402 1.60947 1.22165 1.18931 0.82734 1.46120 0.90961 0.89584 1.25267 0.96040 0.99521 0.96790 1.69841 1.24870 1.47407 1.13061 0.86940 0.82357 0.78723 0.80593 1.21730 1.23277 1.19487 1.20955 0.97796 0.92083 0.86380 1.74961 1.02750 1.17047 1.15266 0.90360 0.89068 0.90410 0.88945 0.90223 0.91183 0.91244 0.90241 0.88940 0.74792 0.90876 0.91107 0.92236 0.92665 0.92663 0.91659 0.95686 0.91117 0.92817 0.91953 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 7.90 37.15 0.29 -0.44 16 2 C 0.18 1.15 1.30 -131.82 -0.17 0.98 16 3 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 4 C -0.16 -0.80 8.66 37.16 0.32 -0.48 16 5 N -0.13 -1.40 3.72 0.52 0.00 -1.40 16 6 N -0.05 -0.69 12.21 60.35 0.74 0.05 16 7 N -0.25 -3.69 12.26 32.10 0.39 -3.29 16 8 C 0.13 1.86 8.14 -156.25 -1.27 0.59 16 9 C 0.62 9.39 7.84 -12.26 -0.10 9.29 16 10 O -0.52 -9.02 17.10 5.34 0.09 -8.93 16 11 N -0.70 -9.72 5.33 -61.20 -0.33 -10.04 16 12 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 13 C -0.12 -1.84 2.37 -90.50 -0.21 -2.05 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 15 C -0.10 -1.46 5.17 -26.69 -0.14 -1.60 16 16 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 17 C 0.12 2.66 4.19 -3.71 -0.02 2.65 16 18 N -0.61 -14.13 2.77 -172.32 -0.48 -14.61 16 19 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 20 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 21 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 22 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16 23 Si 0.88 22.50 24.35 -169.99 -4.14 18.36 16 24 H -0.29 -7.12 6.70 56.52 0.38 -6.74 16 25 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 26 H -0.27 -6.75 6.45 56.52 0.36 -6.38 16 27 C 0.15 2.92 5.60 -3.71 -0.02 2.90 16 28 N -0.25 -3.33 11.85 32.11 0.38 -2.95 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.18 8.14 -51.92 -0.42 -0.25 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.42 5.68 7.46 -40.82 -0.30 5.37 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.03 0.54 6.98 -51.93 -0.36 0.18 16 46 H 0.07 1.68 4.50 -51.93 -0.23 1.45 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.06 1.18 7.14 -51.93 -0.37 0.81 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -34.29 390.92 -6.16 -40.46 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.08 Total: -0.17 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.42 Total: 3.80 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 1.48 Total: -59.41 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.29 -6.16 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.888 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds