Wall clock time and date at job start Tue Mar 31 2020 20:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 C 1.52999 * 109.47297 * 120.00362 * 2 1 3 5 5 N 1.46502 * 109.46706 * 240.00460 * 2 1 3 6 6 N 1.28718 * 125.32456 * 0.02562 * 5 2 1 7 7 N 1.28981 * 108.98867 * 179.97438 * 6 5 2 8 8 C 1.34183 * 107.25494 * 0.02562 * 7 6 5 9 9 C 1.48007 * 126.70243 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00161 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99572 * 359.97386 * 9 8 7 12 12 C 1.46499 * 119.99642 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46935 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.49991 * 305.06410 * 13 12 11 15 15 C 1.53043 * 109.49885 * 184.99924 * 13 12 11 16 16 C 1.53040 * 109.53951 * 178.67980 * 15 13 12 17 17 C 1.53190 * 109.30953 * 61.36749 * 16 15 13 18 18 N 1.46927 * 108.77658 * 305.36386 * 17 16 15 19 19 C 1.36941 * 120.62743 * 233.58750 * 18 17 16 20 20 H 1.08003 * 119.99502 * 152.80177 * 19 18 17 21 21 C 1.38803 * 120.00117 * 332.79841 * 19 18 17 22 22 N 1.31627 * 119.99695 * 159.75583 * 21 19 18 23 23 Si 1.86799 * 120.00502 * 339.75603 * 21 19 18 24 24 H 1.48492 * 109.47422 * 94.89012 * 23 21 19 25 25 H 1.48503 * 109.47244 * 214.89742 * 23 21 19 26 26 H 1.48504 * 109.46823 * 334.89380 * 23 21 19 27 27 C 1.46929 * 118.73729 * 53.60976 * 18 17 16 28 28 N 1.28875 * 125.31730 * 179.72049 * 5 2 1 29 29 H 1.09005 * 109.47482 * 59.99610 * 1 2 3 30 30 H 1.09007 * 109.47252 * 299.99739 * 1 2 3 31 31 H 1.09002 * 109.47702 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47096 * 60.00506 * 3 2 1 33 33 H 1.09008 * 109.47061 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47714 * 300.00232 * 3 2 1 35 35 H 1.09002 * 109.46574 * 59.99518 * 4 2 1 36 36 H 1.09000 * 109.47343 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47122 * 300.00212 * 4 2 1 38 38 H 0.96996 * 120.00513 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.47188 * 299.99718 * 12 11 9 40 40 H 1.08995 * 109.47550 * 60.00467 * 12 11 9 41 41 H 1.09003 * 109.46155 * 298.70407 * 15 13 12 42 42 H 1.09004 * 109.45903 * 58.67474 * 15 13 12 43 43 H 1.08999 * 109.49460 * 181.31901 * 16 15 13 44 44 H 1.08997 * 109.49820 * 301.38073 * 16 15 13 45 45 H 1.09000 * 109.58965 * 65.15521 * 17 16 15 46 46 H 1.09007 * 109.58668 * 185.57645 * 17 16 15 47 47 H 0.97007 * 119.99668 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58167 * 186.60670 * 27 18 17 49 49 H 1.09000 * 109.58622 * 66.18153 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0182 -0.6905 -1.1963 6 7 1.2761 -1.2159 -2.1073 7 7 2.0306 -1.7385 -3.0135 8 6 3.3027 -1.5259 -2.6434 9 6 4.5188 -1.9471 -3.3744 10 8 5.6180 -1.6883 -2.9252 11 7 4.4071 -2.6177 -4.5381 12 6 5.6108 -3.0342 -5.2619 13 6 5.2076 -3.7707 -6.5409 14 1 4.5424 -4.5972 -6.2906 15 6 6.4593 -4.3143 -7.2336 16 6 6.0545 -5.0794 -8.4957 17 6 5.3440 -4.1250 -9.4605 18 7 4.2234 -3.4876 -8.7557 19 6 2.9569 -3.5318 -9.2749 20 1 2.1017 -3.4780 -8.6175 21 6 2.7725 -3.6457 -10.6459 22 7 1.6253 -4.0821 -11.1215 23 14 4.1520 -3.1799 -11.8160 24 1 4.9280 -4.3940 -12.1748 25 1 3.5763 -2.5789 -13.0458 26 1 5.0486 -2.1962 -11.1573 27 6 4.4875 -2.8015 -7.4836 28 7 3.2579 -0.8621 -1.5037 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6765 -1.7490 1.2491 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -0.2076 2.1392 38 1 3.5299 -2.8240 -4.8968 39 1 6.2019 -2.1555 -5.5200 40 1 6.2026 -3.6978 -4.6314 41 1 7.1130 -3.4854 -7.5053 42 1 6.9868 -4.9856 -6.5558 43 1 6.9445 -5.4861 -8.9757 44 1 5.3816 -5.8938 -8.2273 45 1 6.0435 -3.3614 -9.8006 46 1 4.9664 -4.6847 -10.3164 47 1 1.4965 -4.1620 -12.0796 48 1 3.5449 -2.4880 -7.0350 49 1 5.1172 -1.9299 -7.6624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598687648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:38 Heat of formation + Delta-G solvation = 83.416717 kcal Electronic energy + Delta-G solvation = -29320.372002 eV Core-core repulsion = 25320.235423 eV Total energy + Delta-G solvation = -4000.136579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.61978 -40.97331 -39.55587 -38.62813 -36.49268 -34.87823 -34.61897 -33.67857 -32.78514 -32.10154 -28.70967 -28.54123 -27.92384 -27.12827 -25.74113 -25.59052 -23.67585 -22.98669 -22.16684 -21.61901 -20.84692 -19.19768 -18.65875 -18.57825 -17.74365 -17.28756 -17.21781 -16.69716 -15.89884 -15.57051 -15.47411 -15.28079 -15.18611 -15.12003 -15.04822 -14.82251 -14.21234 -14.06520 -13.97298 -13.71472 -13.48080 -13.30096 -13.26914 -13.23608 -13.17371 -12.85552 -12.65435 -12.54138 -12.37189 -12.18294 -12.12841 -12.12467 -12.11139 -11.75612 -11.62545 -11.53174 -11.49611 -11.27338 -11.20538 -10.66287 -10.27219 -8.90810 -8.14817 -5.46269 -0.18734 0.23192 0.63448 1.30146 1.41746 1.50584 1.67565 1.85311 2.42684 2.78506 2.93461 3.07221 3.32376 3.47865 3.55721 3.63082 3.84121 3.96530 3.98242 4.03501 4.26922 4.28447 4.39079 4.41298 4.52109 4.54309 4.58167 4.59823 4.65788 4.71680 4.72195 4.79040 4.79654 4.85151 5.00769 5.01359 5.06944 5.10491 5.11719 5.16786 5.21034 5.26183 5.32125 5.32488 5.60045 5.88393 6.14027 6.16340 6.76438 6.93872 7.02299 7.64665 8.04640 9.05092 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.002440 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.694653 B =11472.808933 C =12588.470793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 C -0.157 4.157 4 C -0.156 4.156 5 N -0.108 5.108 6 N -0.060 5.060 7 N -0.273 5.273 8 C 0.111 3.889 9 C 0.620 3.380 10 O -0.541 6.541 11 N -0.694 5.694 12 C 0.135 3.865 13 C -0.106 4.106 14 H 0.074 0.926 15 C -0.097 4.097 16 C -0.128 4.128 17 C 0.115 3.885 18 N -0.620 5.620 19 C -0.245 4.245 20 H 0.053 0.947 21 C -0.038 4.038 22 N -0.959 5.959 23 Si 0.948 3.052 24 H -0.275 1.275 25 H -0.314 1.314 26 H -0.260 1.260 27 C 0.149 3.851 28 N -0.254 5.254 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.033 0.967 46 H 0.045 0.955 47 H 0.260 0.740 48 H 0.052 0.948 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 7.912 27.187 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.080 3.920 3 C -0.216 4.216 4 C -0.214 4.214 5 N -0.025 5.025 6 N -0.053 5.053 7 N -0.146 5.146 8 C -0.173 4.173 9 C 0.400 3.600 10 O -0.415 6.415 11 N -0.345 5.345 12 C 0.013 3.987 13 C -0.126 4.126 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.166 4.166 17 C -0.010 4.010 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.071 0.929 21 C -0.233 4.233 22 N -0.605 5.605 23 Si 0.777 3.223 24 H -0.202 1.202 25 H -0.244 1.244 26 H -0.184 1.184 27 C 0.024 3.976 28 N -0.109 5.109 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.252 0.748 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.034 8.147 27.497 28.961 hybrid contribution -0.022 -0.063 -1.592 1.593 sum 4.012 8.083 25.906 27.432 Atomic orbital electron populations 1.22188 0.88142 1.04739 1.05848 1.22244 0.97996 0.93481 0.78290 1.22314 1.02629 0.90973 1.05652 1.22307 1.02619 1.01105 0.95413 1.51373 1.00100 1.32746 1.18317 1.78850 1.21572 1.09140 0.95702 1.76176 1.00177 1.18243 1.20052 1.25274 0.94572 1.03283 0.94154 1.16103 0.84392 0.78583 0.80939 1.90811 1.26126 1.56522 1.68064 1.45823 1.12364 1.55311 1.21016 1.21573 0.85603 0.99810 0.91754 1.21770 0.98887 0.98584 0.93393 0.90780 1.21363 0.95664 1.00245 0.96174 1.21912 1.00037 0.97957 0.96744 1.21460 0.89448 0.94785 0.95281 1.44470 1.04363 1.62100 1.23495 1.18883 0.84070 1.43906 0.90605 0.92944 1.25902 0.98418 1.00408 0.98522 1.69975 1.27373 1.50009 1.13174 0.85887 0.79656 0.78818 0.77913 1.20204 1.24369 1.18446 1.21126 0.98104 0.93076 0.85249 1.74925 1.03947 1.17035 1.14949 0.91435 0.85318 0.91230 0.85145 0.91589 0.92198 0.91985 0.91585 0.85167 0.74756 0.90440 0.89291 0.91063 0.89322 0.89773 0.92760 0.94910 0.93715 0.93072 0.92968 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.90 71.98 0.57 -0.58 16 2 C 0.16 1.82 1.30 3.60 0.00 1.83 16 3 C -0.16 -1.35 8.66 71.98 0.62 -0.73 16 4 C -0.16 -1.24 8.66 71.98 0.62 -0.62 16 5 N -0.11 -2.37 3.72 -152.27 -0.57 -2.94 16 6 N -0.06 -1.58 12.21 37.02 0.45 -1.13 16 7 N -0.27 -8.19 12.26 -52.36 -0.64 -8.84 16 8 C 0.11 3.30 8.14 137.15 1.12 4.41 16 9 C 0.62 18.74 7.84 86.83 0.68 19.42 16 10 O -0.54 -18.57 17.10 -3.82 -0.07 -18.64 16 11 N -0.69 -18.84 5.33 -465.82 -2.48 -21.33 16 12 C 0.14 3.34 5.07 86.38 0.44 3.78 16 13 C -0.11 -3.01 2.37 -10.72 -0.03 -3.03 16 14 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 15 C -0.10 -2.45 5.17 30.62 0.16 -2.29 16 16 C -0.13 -3.98 6.08 30.67 0.19 -3.79 16 17 C 0.11 4.75 4.19 86.36 0.36 5.11 16 18 N -0.62 -28.78 2.77 -699.10 -1.94 -30.72 16 19 C -0.24 -13.97 10.04 84.03 0.84 -13.12 16 20 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 21 C -0.04 -2.26 5.24 84.86 0.44 -1.81 16 22 N -0.96 -61.14 13.97 21.65 0.30 -60.84 16 23 Si 0.95 47.24 24.35 68.60 1.67 48.92 16 24 H -0.28 -12.94 6.70 99.48 0.67 -12.27 16 25 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 26 H -0.26 -12.36 6.45 99.48 0.64 -11.72 16 27 C 0.15 5.55 5.60 86.36 0.48 6.03 16 28 N -0.25 -6.85 11.85 -52.32 -0.62 -7.47 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.13 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.42 11.42 7.46 -92.71 -0.69 10.73 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.03 1.31 6.98 -2.39 -0.02 1.30 16 46 H 0.04 2.08 4.50 -2.38 -0.01 2.07 16 47 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 48 H 0.05 2.01 7.14 -2.39 -0.02 1.99 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -77.46 390.92 2.77 -74.69 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.16 Total: 13.70 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.51 Total: 14.61 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -5.50 Total: -133.27 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.07 Total: -18.64 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.67 Total: 48.92 kcal Total: -77.46 2.77 -74.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.108 kcal (2) G-P(sol) polarization free energy of solvation -77.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds