Wall clock time and date at job start Tue Mar 31 2020 20:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 N 1.46507 * 109.47192 * 120.00301 * 2 1 3 5 5 C 1.34774 * 119.99748 * 84.72212 * 4 2 1 6 6 O 1.21664 * 120.00433 * 359.97438 * 5 4 2 7 7 C 1.46965 * 119.99881 * 180.02562 * 5 4 2 8 8 N 1.31592 * 126.49441 * 0.02562 * 7 5 4 9 9 N 1.28546 * 109.69430 * 179.97438 * 8 7 5 10 10 C 1.31993 * 110.00752 * 359.97438 * 9 8 7 11 11 N 1.37787 * 126.27577 * 180.02562 * 10 9 8 12 12 C 1.46953 * 111.00008 * 58.85792 * 11 10 9 13 13 C 1.53048 * 109.36335 * 176.81018 * 12 11 10 14 14 N 1.46954 * 109.36209 * 58.40434 * 13 12 11 15 15 C 1.46897 * 111.00104 * 176.80948 * 14 13 12 16 16 C 1.50706 * 109.47115 * 58.95572 * 15 14 13 17 17 H 1.08006 * 119.99896 * 5.08891 * 16 15 14 18 18 C 1.37875 * 119.99995 * 185.08654 * 16 15 14 19 19 N 1.31513 * 120.00421 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99726 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47207 * 60.00331 * 20 18 16 22 22 H 1.48503 * 109.47094 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47156 * 300.00141 * 20 18 16 24 24 C 1.46953 * 110.87966 * 300.67600 * 14 13 12 25 25 C 1.46954 * 110.99801 * 295.05639 * 11 10 9 26 26 N 1.35367 * 107.45045 * 359.75860 * 10 9 8 27 27 C 1.46492 * 127.08049 * 180.23744 * 26 10 9 28 28 H 1.09004 * 109.47390 * 59.99873 * 1 2 3 29 29 H 1.08997 * 109.47602 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47341 * 299.99545 * 1 2 3 31 31 H 1.08998 * 109.46967 * 240.00064 * 2 1 3 32 32 H 1.08997 * 109.46842 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46974 * 300.00073 * 3 2 1 34 34 H 1.08998 * 109.46534 * 59.99960 * 3 2 1 35 35 H 0.96996 * 119.99767 * 264.99842 * 4 2 1 36 36 H 1.09002 * 109.48570 * 296.77941 * 12 11 10 37 37 H 1.08999 * 109.48579 * 56.84072 * 12 11 10 38 38 H 1.08991 * 109.48929 * 298.43347 * 13 12 11 39 39 H 1.08998 * 109.48698 * 178.36412 * 13 12 11 40 40 H 1.09002 * 109.47803 * 178.95904 * 15 14 13 41 41 H 1.09000 * 109.47281 * 298.96127 * 15 14 13 42 42 H 0.96996 * 120.00293 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.49305 * 299.35528 * 24 14 13 44 44 H 1.09005 * 109.49236 * 179.29300 * 24 14 13 45 45 H 1.09003 * 109.49065 * 303.15732 * 25 11 10 46 46 H 1.09007 * 109.49097 * 63.19975 * 25 11 10 47 47 H 1.09004 * 109.47478 * 264.71666 * 27 26 10 48 48 H 1.08997 * 109.47267 * 24.71771 * 27 26 10 49 49 H 1.09005 * 109.47414 * 144.71912 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1417 -2.0328 1.1961 6 8 1.8471 -2.6708 0.2030 7 6 2.6311 -2.7257 2.3962 8 7 2.9828 -2.1663 3.5342 9 7 3.3600 -3.0727 4.3641 10 6 3.2703 -4.2641 3.8032 11 7 3.5888 -5.4684 4.3919 12 6 2.7880 -5.6902 5.6040 13 6 3.1136 -7.0695 6.1819 14 7 4.5501 -7.1452 6.4822 15 6 4.8898 -8.4292 7.1099 16 6 4.5079 -9.5567 6.1858 17 1 4.1344 -9.3406 5.1957 18 6 4.6354 -10.8643 6.6042 19 7 5.0897 -11.1276 7.8099 20 14 4.1626 -12.2618 5.4585 21 1 4.9926 -12.1962 4.2289 22 1 4.3908 -13.5606 6.1415 23 1 2.7281 -12.1398 5.0945 24 6 5.3509 -6.9234 5.2701 25 6 5.0254 -5.5442 4.6921 26 7 2.8022 -4.0865 2.5455 27 6 2.5360 -5.1250 1.5472 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9562 0.8900 35 1 2.2490 -0.1824 1.9894 36 1 3.0234 -4.9223 6.3409 37 1 1.7283 -5.6417 5.3535 38 1 2.8528 -7.8390 5.4554 39 1 2.5422 -7.2244 7.0971 40 1 5.9616 -8.4662 7.3047 41 1 4.3462 -8.5295 8.0493 42 1 5.1791 -12.0474 8.1044 43 1 5.1156 -7.6913 4.5331 44 1 6.4107 -6.9719 5.5205 45 1 5.5968 -5.3893 3.7769 46 1 5.2863 -4.7744 5.4184 47 1 3.4016 -5.2307 0.8931 48 1 2.3434 -6.0723 2.0508 49 1 1.6650 -4.8448 0.9547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601858502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:03 Heat of formation + Delta-G solvation = 42.235289 kcal Electronic energy + Delta-G solvation = -29522.995182 eV Core-core repulsion = 25521.072842 eV Total energy + Delta-G solvation = -4001.922340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.29549 -40.92715 -40.27026 -37.25651 -37.02423 -35.95285 -34.47779 -33.07139 -31.99857 -31.19668 -29.43500 -28.60587 -28.09431 -26.85265 -25.44654 -24.60831 -23.97923 -22.71240 -22.10885 -21.68336 -20.73774 -19.26011 -18.39860 -17.99762 -17.90307 -17.64307 -17.06348 -16.66488 -16.26270 -15.89695 -15.76366 -15.66687 -15.53231 -15.03729 -14.97894 -14.72514 -14.46515 -14.02610 -13.87963 -13.81441 -13.60912 -13.22293 -13.12243 -13.04558 -12.99288 -12.85723 -12.55054 -12.34036 -12.32109 -12.22923 -12.07561 -11.93731 -11.91344 -11.80668 -11.55318 -11.48381 -11.38183 -10.58266 -10.56111 -10.24160 -10.04882 -9.04403 -8.13255 -6.32061 -0.15826 0.77291 1.04449 1.39941 1.40353 1.48420 1.94368 1.95885 2.39195 2.52326 3.05405 3.12255 3.28941 3.60022 3.63771 3.84716 3.92415 4.06814 4.11746 4.16848 4.21939 4.24649 4.30996 4.38929 4.47374 4.54675 4.59076 4.70217 4.70931 4.75293 4.77107 4.92595 4.93855 4.97933 5.05685 5.13522 5.22492 5.24091 5.27715 5.33005 5.36461 5.38149 5.53565 5.76264 5.94737 6.04790 6.20050 6.24409 6.47136 6.82384 6.87566 7.21212 7.39214 8.89212 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.002254 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.532005 B =12418.982808 C =13039.182050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.155 4.155 4 N -0.687 5.687 5 C 0.616 3.384 6 O -0.551 6.551 7 C 0.114 3.886 8 N -0.245 5.245 9 N -0.326 5.326 10 C 0.373 3.627 11 N -0.468 5.468 12 C 0.083 3.917 13 C 0.071 3.929 14 N -0.544 5.544 15 C 0.201 3.799 16 C -0.553 4.553 17 H 0.060 0.940 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.270 1.270 24 C 0.069 3.931 25 C 0.083 3.917 26 N -0.426 5.426 27 C 0.076 3.924 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.419 0.581 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.007 0.993 41 H 0.010 0.990 42 H 0.264 0.736 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 22.807 -17.151 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 C -0.213 4.213 4 N -0.339 5.339 5 C 0.398 3.602 6 O -0.428 6.428 7 C -0.153 4.153 8 N -0.094 5.094 9 N -0.175 5.175 10 C 0.017 3.983 11 N -0.194 5.194 12 C -0.044 4.044 13 C -0.057 4.057 14 N -0.268 5.268 15 C 0.074 3.926 16 C -0.592 4.592 17 H 0.078 0.922 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.060 4.060 25 C -0.044 4.044 26 N -0.116 5.116 27 C -0.065 4.065 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.025 0.975 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.124 0.876 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.733 23.249 -16.822 29.720 hybrid contribution -0.149 -2.214 -0.576 2.293 sum -7.882 21.035 -17.398 28.413 Atomic orbital electron populations 1.22184 0.94348 1.01783 1.03718 1.21258 0.94824 0.94128 0.86639 1.22067 1.01944 0.92768 1.04519 1.45853 1.64857 1.04591 1.18642 1.16085 0.77611 0.83336 0.83201 1.90832 1.51728 1.66540 1.33664 1.24282 1.10344 0.81833 0.98873 1.74377 1.12290 1.24828 0.97885 1.74949 1.21259 0.96757 1.24555 1.22263 0.99399 0.92026 0.84613 1.58761 1.08323 1.22981 1.29348 1.22208 0.96727 0.97487 0.87958 1.21906 0.89847 0.94456 0.99531 1.62622 1.04746 1.34035 1.25371 1.19405 0.95028 0.84327 0.93831 1.21930 1.43795 0.92388 1.01071 0.92169 1.25791 0.95007 1.01531 0.96439 1.70053 1.46785 1.20407 1.19287 0.85647 0.78964 0.78263 0.79029 1.19520 1.21120 1.19518 1.21944 0.98118 0.94434 0.91476 1.22212 0.83887 0.97765 1.00490 1.46161 1.44813 1.07966 1.12649 1.22449 1.04760 0.89214 0.90112 0.89431 0.94195 0.91520 0.90047 0.91786 0.88949 0.90819 0.74405 0.92625 0.89319 0.94483 0.90692 0.97497 0.97180 0.92696 0.94612 0.90377 0.89166 0.92697 0.88542 0.87610 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 71.98 0.68 -1.03 16 2 C 0.13 1.51 3.18 44.99 0.14 1.66 16 3 C -0.16 -0.90 9.38 71.98 0.68 -0.23 16 4 N -0.69 -10.54 5.07 -446.23 -2.26 -12.81 16 5 C 0.62 13.42 7.76 86.53 0.67 14.09 16 6 O -0.55 -13.80 14.70 -4.23 -0.06 -13.86 16 7 C 0.11 2.89 7.90 135.73 1.07 3.96 16 8 N -0.24 -6.87 11.92 -51.06 -0.61 -7.48 16 9 N -0.33 -10.21 12.17 -58.76 -0.72 -10.92 16 10 C 0.37 10.81 6.37 260.69 1.66 12.47 16 11 N -0.47 -13.88 4.62 -706.74 -3.26 -17.14 16 12 C 0.08 2.55 5.49 86.31 0.47 3.03 16 13 C 0.07 2.64 5.24 86.31 0.45 3.10 16 14 N -0.54 -22.45 4.92 -900.30 -4.43 -26.88 16 15 C 0.20 10.19 5.14 85.56 0.44 10.63 16 16 C -0.55 -29.37 7.66 25.60 0.20 -29.18 16 17 H 0.06 3.13 5.82 -2.91 -0.02 3.11 16 18 C 0.01 0.65 5.46 84.65 0.46 1.11 16 19 N -0.93 -54.01 13.29 21.45 0.28 -53.72 16 20 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.07 2.51 5.32 86.31 0.46 2.97 16 25 C 0.08 2.52 5.54 86.31 0.48 2.99 16 26 N -0.43 -10.87 3.21 -541.59 -1.74 -12.61 16 27 C 0.08 1.51 10.54 127.77 1.35 2.85 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.12 7.59 -2.39 -0.02 1.11 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.42 5.52 8.31 -92.71 -0.77 4.74 16 36 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 37 H 0.09 2.44 8.13 -2.39 -0.02 2.42 16 38 H 0.04 1.49 6.62 -2.39 -0.02 1.47 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.04 1.41 6.78 -2.38 -0.02 1.39 16 44 H 0.08 2.80 8.12 -2.38 -0.02 2.79 16 45 H 0.09 2.40 8.13 -2.39 -0.02 2.39 16 46 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.11 2.04 8.06 -2.39 -0.02 2.03 16 49 H 0.11 2.02 6.83 -2.38 -0.02 2.00 16 Total: -1.00 -65.89 395.57 -1.37 -67.26 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.19 Total: 14.90 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 9.21 Total: 28.42 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -12.73 Total: -141.56 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.06 Total: -13.86 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -65.89 -1.37 -67.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601858502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.491 kcal (2) G-P(sol) polarization free energy of solvation -65.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds