Wall clock time and date at job start Tue Mar 31 2020 19:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46924 * 2 1 4 4 C 1.53002 * 109.47015 * 240.00196 * 2 1 3 5 5 N 1.46500 * 109.47364 * 120.00164 * 2 1 3 6 6 N 1.28776 * 125.44752 * 240.00710 * 5 2 1 7 7 N 1.29010 * 108.72419 * 179.72263 * 6 5 2 8 8 C 1.33315 * 107.34878 * 0.42788 * 7 6 5 9 9 C 1.50703 * 126.54494 * 179.83620 * 8 7 6 10 10 C 1.50701 * 109.47064 * 269.68606 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00045 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00290 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46960 * 89.99695 * 21 19 17 23 23 H 1.48498 * 109.47151 * 209.99981 * 21 19 17 24 24 H 1.48499 * 109.46789 * 329.99889 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 N 1.28877 * 125.44702 * 59.99584 * 5 2 1 28 28 H 1.09005 * 109.46890 * 299.99993 * 1 2 3 29 29 H 1.08997 * 109.46895 * 59.99592 * 1 2 3 30 30 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47021 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47668 * 299.99935 * 3 2 1 33 33 H 1.09005 * 109.47332 * 60.00278 * 3 2 1 34 34 H 1.08999 * 109.47084 * 299.99585 * 4 2 1 35 35 H 1.08997 * 109.47115 * 60.00347 * 4 2 1 36 36 H 1.09002 * 109.46907 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47152 * 149.68699 * 9 8 7 38 38 H 1.09001 * 109.46980 * 29.68799 * 9 8 7 39 39 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 40 40 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 41 41 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 42 42 H 1.09004 * 109.44306 * 173.95783 * 14 13 12 43 43 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 44 44 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 45 45 H 0.96998 * 119.99927 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 47 47 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 48 48 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 49 49 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 2.7618 -0.1684 2.1088 7 7 2.9939 -1.0586 3.0134 8 6 2.3752 -2.1780 2.6375 9 6 2.3653 -3.4901 3.3788 10 6 3.5221 -4.3376 2.9154 11 8 4.2802 -3.9172 2.0672 12 7 3.7148 -5.5621 3.4445 13 6 2.8116 -6.0881 4.4792 14 6 2.3416 -7.4852 4.0440 15 7 3.5138 -8.3236 3.7589 16 6 3.1170 -9.7157 3.5092 17 6 2.5415 -10.3080 4.7699 18 1 2.4766 -9.7098 5.6668 19 6 2.0970 -11.6130 4.7780 20 7 1.5943 -12.1297 5.8780 21 14 2.2086 -12.6475 3.2265 22 1 3.5144 -13.3539 3.1955 23 1 1.1068 -13.6430 3.2150 24 1 2.0933 -11.7677 2.0357 25 6 4.2911 -7.7877 2.6335 26 6 4.8376 -6.4052 3.0069 27 7 1.7726 -1.9179 1.5033 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.4296 -4.0126 3.1801 38 1 2.4571 -3.3036 4.4488 39 1 3.3427 -6.1563 5.4286 40 1 1.9512 -5.4272 4.5845 41 1 1.7270 -7.4025 3.1477 42 1 1.7572 -7.9374 4.8453 43 1 2.3666 -9.7436 2.7193 44 1 3.9893 -10.2927 3.2021 45 1 1.2819 -13.0479 5.8838 46 1 3.6493 -7.7009 1.7568 47 1 5.1208 -8.4592 2.4123 48 1 5.3175 -5.9543 2.1383 49 1 5.5595 -6.5033 3.8178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602199560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:53 Heat of formation + Delta-G solvation = 104.236980 kcal Electronic energy + Delta-G solvation = -29354.879946 eV Core-core repulsion = 25355.646201 eV Total energy + Delta-G solvation = -3999.233745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.45496 -40.07100 -38.05857 -37.59287 -34.53364 -33.72311 -33.35480 -32.42894 -31.10726 -29.68381 -28.58225 -28.07252 -27.91578 -25.68427 -24.74126 -23.54220 -22.79814 -21.62152 -20.88282 -20.51442 -18.78338 -17.63870 -17.32893 -16.93708 -16.79748 -15.96748 -15.58134 -14.86548 -14.72030 -14.64265 -14.54215 -14.43188 -14.24660 -13.79066 -13.64909 -13.55535 -13.42451 -13.10733 -13.00198 -12.86413 -12.47443 -12.37660 -12.34884 -12.15566 -12.04833 -11.99054 -11.58571 -11.55396 -11.20533 -11.14473 -11.00262 -10.93928 -10.83004 -10.61621 -10.39295 -10.35291 -9.94311 -9.68838 -9.37357 -8.63140 -8.56179 -7.49882 -6.11511 -4.09592 1.15538 1.65507 2.03101 2.60653 3.04114 3.24396 3.32262 3.33811 3.60296 3.89147 4.01591 4.11903 4.36506 4.37588 4.47757 4.59551 4.85955 4.89927 4.95650 5.01551 5.06007 5.10606 5.13274 5.16235 5.20135 5.27215 5.30170 5.41767 5.43464 5.49439 5.55145 5.56501 5.62241 5.69043 5.74620 5.80667 5.94905 6.10695 6.14636 6.33203 6.39147 6.55484 6.77318 6.88905 7.41851 7.50066 7.78137 7.91843 8.14808 8.30195 8.56824 8.95480 9.50004 11.01197 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.002165 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.195840 B =12926.976901 C =13179.374953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 C -0.152 4.152 4 C -0.159 4.159 5 N -0.131 5.131 6 N -0.064 5.064 7 N -0.277 5.277 8 C 0.188 3.812 9 C -0.044 4.044 10 C 0.523 3.477 11 O -0.543 6.543 12 N -0.606 5.606 13 C 0.106 3.894 14 C 0.048 3.952 15 N -0.526 5.526 16 C 0.162 3.838 17 C -0.512 4.512 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.874 3.126 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.038 3.962 26 C 0.120 3.880 27 N -0.295 5.295 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.104 0.896 43 H -0.011 1.011 44 H 0.026 0.974 45 H 0.264 0.736 46 H 0.027 0.973 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 25.203 -11.892 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.098 3.902 3 C -0.210 4.210 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.056 5.056 7 N -0.148 5.148 8 C -0.095 4.095 9 C -0.087 4.087 10 C 0.309 3.691 11 O -0.421 6.421 12 N -0.339 5.339 13 C -0.016 4.016 14 C -0.081 4.081 15 N -0.251 5.251 16 C 0.036 3.964 17 C -0.550 4.550 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.193 1.193 25 C -0.091 4.091 26 C -0.002 4.002 27 N -0.145 5.145 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.045 0.955 42 H 0.123 0.877 43 H 0.007 0.993 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.739 25.913 -12.006 28.612 hybrid contribution -0.623 -1.408 -1.333 2.036 sum -2.361 24.504 -13.338 27.999 Atomic orbital electron populations 1.22229 0.90889 1.04572 1.03945 1.21368 0.96075 0.92978 0.79776 1.22084 1.03231 0.91550 1.04174 1.22234 1.02601 1.01997 0.94919 1.50403 1.30377 1.05590 1.18062 1.78877 1.08782 1.22467 0.95515 1.75803 1.20039 0.98846 1.20079 1.24613 0.96400 0.96916 0.91559 1.19915 1.00330 0.87632 1.00844 1.20068 0.85723 0.81535 0.81741 1.90699 1.47173 1.71677 1.32508 1.48171 1.29966 1.15470 1.40333 1.22186 0.92951 0.95412 0.91086 1.22466 0.92721 0.91549 1.01315 1.61890 1.21787 1.03699 1.37734 1.20180 0.94801 0.84225 0.97163 1.20998 1.39764 0.97541 0.96670 0.89997 1.24894 0.94840 0.97631 0.95896 1.69887 1.41907 1.15018 1.26880 0.86877 0.78089 0.80575 0.84299 1.20110 1.21186 1.19342 1.22468 0.98597 0.95127 0.92902 1.21746 0.88162 0.89463 1.00847 1.74546 1.24367 0.99317 1.16260 0.91422 0.89208 0.90370 0.90588 0.89306 0.90624 0.90368 0.89262 0.91316 0.85890 0.85513 0.89917 0.89903 0.95502 0.87744 0.99336 0.95613 0.92595 0.95448 0.90005 0.89378 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.66 37.16 0.32 -0.54 16 2 C 0.18 1.31 1.30 -131.82 -0.17 1.14 16 3 C -0.15 -0.82 7.91 37.16 0.29 -0.53 16 4 C -0.16 -1.05 8.66 37.16 0.32 -0.73 16 5 N -0.13 -1.53 3.73 0.48 0.00 -1.53 16 6 N -0.06 -0.87 12.24 60.35 0.74 -0.13 16 7 N -0.28 -4.17 12.50 32.45 0.41 -3.76 16 8 C 0.19 2.62 6.86 -156.63 -1.07 1.54 16 9 C -0.04 -0.51 4.69 -29.03 -0.14 -0.65 16 10 C 0.52 7.71 7.70 -10.98 -0.08 7.62 16 11 O -0.54 -9.99 15.49 5.56 0.09 -9.91 16 12 N -0.61 -8.64 3.00 -172.16 -0.52 -9.16 16 13 C 0.11 1.38 6.53 -3.37 -0.02 1.36 16 14 C 0.05 0.82 5.47 -3.46 -0.02 0.80 16 15 N -0.53 -10.24 4.62 -235.44 -1.09 -11.32 16 16 C 0.16 3.75 3.79 -4.98 -0.02 3.73 16 17 C -0.51 -13.79 8.96 -34.44 -0.31 -14.10 16 18 H 0.08 2.37 7.37 -52.48 -0.39 1.99 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 21 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 25 C 0.04 0.64 5.62 -3.68 -0.02 0.62 16 26 C 0.12 1.79 6.60 -3.58 -0.02 1.76 16 27 N -0.29 -3.94 11.83 32.47 0.38 -3.56 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.12 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.13 1.14 7.99 -51.93 -0.41 0.72 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.79 6.02 -51.93 -0.31 0.48 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 1.94 6.67 -51.93 -0.35 1.60 16 43 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 44 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 48 H 0.09 1.32 7.06 -51.93 -0.37 0.96 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -35.18 393.32 -7.06 -42.23 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.06 Total: -3.06 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.04 Total: 3.88 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.70 Total: -55.31 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.18 -7.06 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602199560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.469 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds