Wall clock time and date at job start Tue Mar 31 2020 19:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46924 * 2 1 4 4 C 1.53002 * 109.47015 * 240.00196 * 2 1 3 5 5 N 1.46500 * 109.47364 * 120.00164 * 2 1 3 6 6 N 1.28776 * 125.44752 * 240.00710 * 5 2 1 7 7 N 1.29010 * 108.72419 * 179.72263 * 6 5 2 8 8 C 1.33315 * 107.34878 * 0.42788 * 7 6 5 9 9 C 1.50703 * 126.54494 * 179.83620 * 8 7 6 10 10 C 1.50701 * 109.47064 * 269.68606 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00045 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00290 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46960 * 89.99695 * 21 19 17 23 23 H 1.48498 * 109.47151 * 209.99981 * 21 19 17 24 24 H 1.48499 * 109.46789 * 329.99889 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 N 1.28877 * 125.44702 * 59.99584 * 5 2 1 28 28 H 1.09005 * 109.46890 * 299.99993 * 1 2 3 29 29 H 1.08997 * 109.46895 * 59.99592 * 1 2 3 30 30 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47021 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47668 * 299.99935 * 3 2 1 33 33 H 1.09005 * 109.47332 * 60.00278 * 3 2 1 34 34 H 1.08999 * 109.47084 * 299.99585 * 4 2 1 35 35 H 1.08997 * 109.47115 * 60.00347 * 4 2 1 36 36 H 1.09002 * 109.46907 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47152 * 149.68699 * 9 8 7 38 38 H 1.09001 * 109.46980 * 29.68799 * 9 8 7 39 39 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 40 40 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 41 41 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 42 42 H 1.09004 * 109.44306 * 173.95783 * 14 13 12 43 43 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 44 44 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 45 45 H 0.96998 * 119.99927 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 47 47 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 48 48 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 49 49 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 2.7618 -0.1684 2.1088 7 7 2.9939 -1.0586 3.0134 8 6 2.3752 -2.1780 2.6375 9 6 2.3653 -3.4901 3.3788 10 6 3.5221 -4.3376 2.9154 11 8 4.2802 -3.9172 2.0672 12 7 3.7148 -5.5621 3.4445 13 6 2.8116 -6.0881 4.4792 14 6 2.3416 -7.4852 4.0440 15 7 3.5138 -8.3236 3.7589 16 6 3.1170 -9.7157 3.5092 17 6 2.5415 -10.3080 4.7699 18 1 2.4766 -9.7098 5.6668 19 6 2.0970 -11.6130 4.7780 20 7 1.5943 -12.1297 5.8780 21 14 2.2086 -12.6475 3.2265 22 1 3.5144 -13.3539 3.1955 23 1 1.1068 -13.6430 3.2150 24 1 2.0933 -11.7677 2.0357 25 6 4.2911 -7.7877 2.6335 26 6 4.8376 -6.4052 3.0069 27 7 1.7726 -1.9179 1.5033 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.4296 -4.0126 3.1801 38 1 2.4571 -3.3036 4.4488 39 1 3.3427 -6.1563 5.4286 40 1 1.9512 -5.4272 4.5845 41 1 1.7270 -7.4025 3.1477 42 1 1.7572 -7.9374 4.8453 43 1 2.3666 -9.7436 2.7193 44 1 3.9893 -10.2927 3.2021 45 1 1.2819 -13.0479 5.8838 46 1 3.6493 -7.7009 1.7568 47 1 5.1208 -8.4592 2.4123 48 1 5.3175 -5.9543 2.1383 49 1 5.5595 -6.5033 3.8178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602199560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:52 Heat of formation + Delta-G solvation = 78.281325 kcal Electronic energy + Delta-G solvation = -29356.005467 eV Core-core repulsion = 25355.646201 eV Total energy + Delta-G solvation = -4000.359266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.40320 -41.26853 -39.10690 -38.55787 -36.00511 -34.73902 -34.43401 -34.17605 -32.33648 -30.85263 -30.09039 -28.53628 -28.44146 -27.21449 -25.63365 -24.77507 -24.02607 -23.15668 -21.96366 -21.59032 -19.97203 -18.93257 -18.65918 -18.04338 -17.89470 -17.06861 -16.71508 -16.52053 -16.03400 -15.82365 -15.52264 -15.23193 -15.20184 -15.17025 -14.87014 -14.55129 -14.53214 -14.41436 -14.01573 -13.63397 -13.45502 -13.24249 -13.21659 -13.15347 -12.88645 -12.87182 -12.86276 -12.57524 -12.50963 -12.31088 -12.20307 -12.17102 -11.95541 -11.93935 -11.87635 -11.83815 -11.39766 -11.36118 -10.81203 -10.75861 -9.81242 -9.04696 -8.25989 -6.28601 0.20570 0.90721 1.02884 1.36285 1.37482 1.46933 1.48351 1.94049 2.35498 2.76488 3.06525 3.13083 3.17326 3.42806 3.51270 3.58158 3.66042 3.96935 4.03796 4.13764 4.23639 4.29498 4.35926 4.42937 4.45369 4.47965 4.51343 4.53493 4.59276 4.66831 4.70882 4.72085 4.73273 4.76706 4.83084 4.88707 4.95081 5.00751 5.08086 5.10002 5.15380 5.21340 5.34482 5.41247 5.54529 5.94140 6.28295 6.36201 6.61557 6.77955 7.00842 7.32107 7.34967 8.89739 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.002165 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.195840 B =12926.976901 C =13179.374953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.119 5.119 6 N -0.077 5.077 7 N -0.307 5.307 8 C 0.176 3.824 9 C -0.041 4.041 10 C 0.524 3.476 11 O -0.584 6.584 12 N -0.605 5.605 13 C 0.116 3.884 14 C 0.047 3.953 15 N -0.539 5.539 16 C 0.171 3.829 17 C -0.511 4.511 18 H 0.048 0.952 19 C 0.011 3.989 20 N -0.944 5.944 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.255 1.255 25 C 0.043 3.957 26 C 0.125 3.875 27 N -0.306 5.306 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.050 0.950 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.027 0.973 42 H 0.081 0.919 43 H -0.015 1.015 44 H 0.028 0.972 45 H 0.266 0.734 46 H 0.024 0.976 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 26.621 -13.797 30.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.083 3.917 3 C -0.206 4.206 4 C -0.214 4.214 5 N -0.035 5.035 6 N -0.069 5.069 7 N -0.177 5.177 8 C -0.107 4.107 9 C -0.083 4.083 10 C 0.312 3.688 11 O -0.464 6.464 12 N -0.338 5.338 13 C -0.006 4.006 14 C -0.081 4.081 15 N -0.264 5.264 16 C 0.044 3.956 17 C -0.549 4.549 18 H 0.066 0.934 19 C -0.187 4.187 20 N -0.585 5.585 21 Si 0.765 3.235 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.179 1.179 25 C -0.086 4.086 26 C 0.003 3.997 27 N -0.157 5.157 28 H 0.082 0.918 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.070 0.930 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.003 0.997 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.415 27.359 -13.903 30.783 hybrid contribution -0.424 -1.756 -0.762 1.961 sum -2.839 25.603 -14.664 29.641 Atomic orbital electron populations 1.22250 0.89109 1.04228 1.05468 1.22005 0.97487 0.93728 0.78525 1.22134 1.02359 0.90426 1.05724 1.22258 1.01477 1.01533 0.96091 1.50950 1.29002 1.05195 1.18342 1.78794 1.09491 1.22586 0.96017 1.75752 1.21160 0.99584 1.21188 1.25030 0.96339 0.97468 0.91888 1.20082 0.99854 0.86306 1.02100 1.20560 0.85913 0.81465 0.80812 1.90685 1.48853 1.72517 1.34361 1.48220 1.29780 1.15420 1.40365 1.22219 0.94261 0.93691 0.90466 1.22476 0.91930 0.93186 1.00540 1.61810 1.22946 1.02524 1.39122 1.19937 0.94333 0.86482 0.94830 1.21218 1.39243 0.97367 0.97087 0.93355 1.25755 0.94658 0.99133 0.99148 1.70031 1.43578 1.15592 1.29307 0.85809 0.78303 0.78858 0.80505 1.19263 1.20947 1.17898 1.22485 0.98291 0.96130 0.91689 1.21640 0.88513 0.88496 1.01093 1.74516 1.24794 1.00153 1.16264 0.91830 0.85718 0.91608 0.91980 0.85667 0.91117 0.92009 0.85490 0.93034 0.83231 0.82676 0.89475 0.85753 0.95456 0.90020 0.99719 0.95409 0.92500 0.95810 0.89251 0.89490 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.66 71.98 0.62 -0.70 16 2 C 0.16 2.12 1.30 3.61 0.00 2.13 16 3 C -0.15 -1.33 7.91 71.98 0.57 -0.76 16 4 C -0.16 -1.81 8.66 71.98 0.62 -1.19 16 5 N -0.12 -2.72 3.73 -152.39 -0.57 -3.29 16 6 N -0.08 -2.08 12.24 37.02 0.45 -1.63 16 7 N -0.31 -9.15 12.50 -51.26 -0.64 -9.79 16 8 C 0.18 4.73 6.86 138.55 0.95 5.68 16 9 C -0.04 -0.86 4.69 29.10 0.14 -0.72 16 10 C 0.52 14.62 7.70 87.66 0.68 15.30 16 11 O -0.58 -21.19 15.49 -3.03 -0.05 -21.24 16 12 N -0.61 -16.15 3.00 -816.99 -2.45 -18.60 16 13 C 0.12 2.75 6.53 86.50 0.57 3.31 16 14 C 0.05 1.56 5.47 86.54 0.47 2.04 16 15 N -0.54 -20.59 4.62 -898.80 -4.15 -24.74 16 16 C 0.17 7.81 3.79 85.56 0.32 8.14 16 17 C -0.51 -27.95 8.96 25.60 0.23 -27.72 16 18 H 0.05 2.90 7.37 -2.91 -0.02 2.88 16 19 C 0.01 0.60 5.47 84.65 0.46 1.07 16 20 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 21 Si 0.94 42.92 27.47 68.60 1.88 44.81 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 25 C 0.04 1.37 5.62 86.40 0.49 1.85 16 26 C 0.13 3.57 6.60 86.36 0.57 4.13 16 27 N -0.31 -7.98 11.83 -51.20 -0.61 -8.58 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.15 2.27 7.67 -2.39 -0.02 2.25 16 38 H 0.16 2.30 7.99 -2.39 -0.02 2.28 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.12 1.93 6.02 -2.39 -0.01 1.92 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 3.07 6.67 -2.38 -0.02 3.06 16 43 H -0.01 -0.69 7.18 -2.39 -0.02 -0.71 16 44 H 0.03 1.26 7.40 -2.39 -0.02 1.24 16 45 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 48 H 0.09 2.54 7.06 -2.39 -0.02 2.52 16 49 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -78.97 393.32 1.75 -77.22 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.88 Total: 10.09 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.69 Total: 12.56 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -7.67 Total: -123.44 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.81 kcal Total: -78.97 1.75 -77.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602199560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.506 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds