Wall clock time and date at job start Tue Mar 31 2020 19:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99473 * 2 1 4 4 C 1.53010 * 109.46794 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46908 * 180.02562 * 4 3 2 6 6 C 1.34262 * 125.75266 * 125.02466 * 5 4 3 7 7 C 1.38042 * 107.41609 * 180.02562 * 6 5 4 8 8 C 1.47435 * 126.41666 * 180.02562 * 7 6 5 9 9 O 1.21605 * 119.99442 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00425 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00112 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46741 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.49893 * 55.00657 * 12 11 10 14 14 C 1.53050 * 109.49309 * 175.06615 * 12 11 10 15 15 C 1.53035 * 109.53565 * 181.31822 * 14 12 11 16 16 C 1.53188 * 109.31578 * 298.63844 * 15 14 12 17 17 N 1.46922 * 108.77554 * 54.63189 * 16 15 14 18 18 C 1.36939 * 120.62681 * 126.43957 * 17 16 15 19 19 H 1.08000 * 119.99752 * 207.66639 * 18 17 16 20 20 C 1.38813 * 120.00217 * 27.66075 * 18 17 16 21 21 N 1.31614 * 119.99907 * 17.36698 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 197.36255 * 20 18 17 23 23 H 1.48499 * 109.47452 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46827 * 120.00213 * 22 20 18 25 25 H 1.48502 * 109.47055 * 239.99884 * 22 20 18 26 26 C 1.46929 * 118.77010 * 306.41374 * 17 16 15 27 27 C 1.41288 * 107.17215 * 359.97438 * 7 6 5 28 28 N 1.30445 * 108.02319 * 0.02562 * 27 7 6 29 29 H 1.09006 * 109.46626 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47059 * 299.98992 * 1 2 3 31 31 H 1.08994 * 109.47473 * 59.99741 * 1 2 3 32 32 H 1.08996 * 109.46892 * 60.00906 * 3 2 1 33 33 H 1.08995 * 109.47665 * 300.00173 * 3 2 1 34 34 H 1.08995 * 109.47223 * 60.00116 * 4 3 2 35 35 H 1.08995 * 109.46866 * 300.00307 * 4 3 2 36 36 H 1.07998 * 126.29079 * 0.02562 * 6 5 4 37 37 H 0.96999 * 119.99834 * 359.97438 * 10 8 7 38 38 H 1.08990 * 109.47507 * 300.00072 * 11 10 8 39 39 H 1.09001 * 109.46657 * 60.00813 * 11 10 8 40 40 H 1.09004 * 109.46134 * 301.34018 * 14 12 11 41 41 H 1.08995 * 109.45820 * 61.31463 * 14 12 11 42 42 H 1.09001 * 109.50094 * 58.58873 * 15 14 12 43 43 H 1.09004 * 109.49816 * 178.68089 * 15 14 12 44 44 H 1.09006 * 109.59206 * 174.42622 * 16 15 14 45 45 H 1.09006 * 109.58549 * 294.84428 * 16 15 14 46 46 H 0.97001 * 119.99983 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.56390 * 293.78930 * 26 17 16 48 48 H 1.08993 * 109.61850 * 173.35981 * 26 17 16 49 49 H 1.08005 * 125.99007 * 180.26859 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0219 2.9849 0.8922 7 6 5.3265 4.2838 0.5376 8 6 6.2627 5.1846 1.2344 9 8 6.8530 4.7996 2.2254 10 7 6.4644 6.4348 0.7732 11 6 7.3943 7.3301 1.4659 12 6 7.4389 8.6777 0.7427 13 1 6.4292 9.0798 0.6599 14 6 8.3139 9.6530 1.5336 15 6 8.3327 11.0111 0.8284 16 6 8.9344 10.8472 -0.5708 17 7 8.1870 9.8052 -1.2878 18 6 7.6472 10.0572 -2.5208 19 1 6.7703 9.5177 -2.8469 20 6 8.2269 11.0063 -3.3515 21 7 9.4579 11.4140 -3.1263 22 14 7.2600 11.7046 -4.7892 23 1 5.9100 11.0871 -4.8245 24 1 7.1272 13.1750 -4.6287 25 1 7.9741 11.4076 -6.0569 26 6 8.0298 8.4872 -0.6577 27 6 4.5739 4.5879 -0.6188 28 7 3.8678 3.5358 -0.9291 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8567 0.6441 -0.8908 35 1 3.8574 0.6437 0.8890 36 1 5.4257 2.4403 1.7328 37 1 5.9937 6.7418 -0.0175 38 1 7.0588 7.4790 2.4921 39 1 8.3902 6.8871 1.4697 40 1 7.9089 9.7713 2.5387 41 1 9.3294 9.2619 1.5951 42 1 7.3148 11.3915 0.7443 43 1 8.9370 11.7119 1.4046 44 1 8.8597 11.7896 -1.1135 45 1 9.9809 10.5538 -0.4865 46 1 9.8632 12.0769 -3.7070 47 1 9.0024 8.0010 -0.5809 48 1 7.3582 7.8727 -1.2572 49 1 4.5845 5.5256 -1.1546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602898053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:17 Heat of formation + Delta-G solvation = 9.078900 kcal Electronic energy + Delta-G solvation = -28481.795872 eV Core-core repulsion = 24446.143012 eV Total energy + Delta-G solvation = -4035.652860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62331 -39.25103 -38.47041 -37.67490 -34.75636 -34.28856 -32.94584 -30.81635 -30.49268 -30.40818 -29.36479 -26.87769 -25.54891 -25.23246 -23.88843 -22.80353 -22.01089 -21.10436 -20.76003 -20.04085 -19.05652 -18.12470 -17.05767 -16.81075 -16.60241 -15.96613 -15.76273 -15.58240 -15.30727 -14.90511 -14.80968 -14.46379 -14.10407 -13.91948 -13.58659 -13.51073 -13.42254 -13.03991 -12.75541 -12.56942 -12.31552 -12.22916 -12.15413 -12.10536 -11.89299 -11.30157 -11.20732 -11.01177 -10.71456 -10.46412 -10.29299 -10.20264 -10.16384 -9.94243 -9.88447 -9.82512 -9.53741 -9.40334 -9.05127 -8.71803 -8.46401 -6.67172 -5.78914 -3.21225 1.31359 1.85366 2.01752 3.22811 3.36525 3.41375 3.44617 3.46271 3.51336 4.10100 4.33931 4.48180 4.50555 4.55213 4.68450 4.80477 4.81924 4.97415 5.03590 5.11353 5.14864 5.15384 5.28700 5.32248 5.46662 5.47471 5.55713 5.64575 5.86168 6.00172 6.03062 6.17460 6.27017 6.35843 6.40085 6.41499 6.54123 6.58602 6.61236 6.72691 6.80228 6.87814 6.98996 7.26520 7.41101 7.67964 7.71389 7.79102 8.40056 8.44497 9.20969 9.84781 10.41447 11.29339 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.002200 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.589607 B =12725.626681 C =14398.466463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.288 4.288 8 C 0.593 3.407 9 O -0.558 6.558 10 N -0.719 5.719 11 C 0.130 3.870 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.154 3.846 27 C 0.088 3.912 28 N -0.297 5.297 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.189 0.811 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.253 0.747 47 H 0.019 0.981 48 H 0.050 0.950 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 -18.323 9.385 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.013 3.987 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.302 4.302 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.369 5.369 11 C 0.006 3.994 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.027 3.973 27 C -0.101 4.101 28 N -0.116 5.116 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.035 0.965 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.069 0.931 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -14.197 -19.283 9.144 25.631 hybrid contribution -0.250 1.172 -0.623 1.351 sum -14.447 -18.111 8.521 24.684 Atomic orbital electron populations 1.22788 0.79855 1.03154 1.00458 1.87776 1.20658 1.26873 1.95623 1.22655 0.92450 0.85398 1.02202 1.21481 0.92748 0.78691 1.05741 1.48324 1.33075 1.12027 1.21006 1.22975 0.90743 0.94293 0.94088 1.20331 1.10266 0.96379 1.03267 1.17185 0.80536 0.81111 0.83156 1.90754 1.50440 1.75843 1.26675 1.45828 1.46061 1.13105 1.31917 1.21444 0.92914 0.89517 0.95532 1.21956 1.00802 0.92985 0.98102 0.90863 1.21340 0.99153 0.96067 0.97211 1.22171 1.01105 0.95264 0.99558 1.20799 0.92292 0.94527 0.88066 1.44052 1.63548 1.06505 1.17283 1.19200 1.06228 1.20762 0.91951 0.91664 1.25037 0.95177 1.01829 0.97684 1.70049 1.11502 1.33354 1.39658 0.86252 0.79553 0.78885 0.82244 1.20257 1.21604 1.21777 1.20901 0.97133 0.88808 0.90456 1.24197 0.93199 0.97895 0.94774 1.77187 1.24460 0.96762 1.13196 0.89130 0.93772 0.93626 0.92546 0.91361 0.88266 0.87309 0.79407 0.76355 0.91970 0.91559 0.93442 0.92475 0.92764 0.93226 0.89563 0.96479 0.93702 0.96335 0.93112 0.78977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.91 10.70 -35.23 -0.38 -3.28 16 3 C 0.05 0.35 6.11 37.16 0.23 0.58 16 4 C 0.13 0.89 6.86 -4.04 -0.03 0.86 16 5 N -0.36 -3.44 3.65 -60.81 -0.22 -3.66 16 6 C 0.13 1.29 11.25 -16.56 -0.19 1.10 16 7 C -0.29 -3.43 6.13 -105.07 -0.64 -4.07 16 8 C 0.59 8.44 7.81 -12.52 -0.10 8.35 16 9 O -0.56 -9.64 16.90 5.27 0.09 -9.55 16 10 N -0.72 -9.61 5.32 -61.38 -0.33 -9.93 16 11 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 12 C -0.12 -1.90 2.37 -90.49 -0.21 -2.11 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 15 C -0.14 -2.64 6.08 -26.62 -0.16 -2.80 16 16 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 17 N -0.59 -14.32 3.00 -172.32 -0.52 -14.84 16 18 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 19 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 22 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.15 3.04 5.60 -3.71 -0.02 3.02 16 27 C 0.09 0.96 11.50 -16.98 -0.20 0.77 16 28 N -0.30 -3.40 12.33 30.86 0.38 -3.02 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.19 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.40 4.77 6.65 -40.82 -0.27 4.49 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 49 H 0.19 1.69 7.50 -52.48 -0.39 1.29 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -33.47 400.54 -8.04 -41.51 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.08 Total: 1.57 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.62 Total: 4.12 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.06 Total: -56.74 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.29 Total: -12.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.47 -8.04 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.590 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds