Wall clock time and date at job start Tue Mar 31 2020 19:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99473 * 2 1 4 4 C 1.53010 * 109.46794 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46908 * 180.02562 * 4 3 2 6 6 C 1.34262 * 125.75266 * 125.02466 * 5 4 3 7 7 C 1.38042 * 107.41609 * 180.02562 * 6 5 4 8 8 C 1.47435 * 126.41666 * 180.02562 * 7 6 5 9 9 O 1.21605 * 119.99442 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00425 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00112 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46741 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.49893 * 55.00657 * 12 11 10 14 14 C 1.53050 * 109.49309 * 175.06615 * 12 11 10 15 15 C 1.53035 * 109.53565 * 181.31822 * 14 12 11 16 16 C 1.53188 * 109.31578 * 298.63844 * 15 14 12 17 17 N 1.46922 * 108.77554 * 54.63189 * 16 15 14 18 18 C 1.36939 * 120.62681 * 126.43957 * 17 16 15 19 19 H 1.08000 * 119.99752 * 207.66639 * 18 17 16 20 20 C 1.38813 * 120.00217 * 27.66075 * 18 17 16 21 21 N 1.31614 * 119.99907 * 17.36698 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 197.36255 * 20 18 17 23 23 H 1.48499 * 109.47452 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46827 * 120.00213 * 22 20 18 25 25 H 1.48502 * 109.47055 * 239.99884 * 22 20 18 26 26 C 1.46929 * 118.77010 * 306.41374 * 17 16 15 27 27 C 1.41288 * 107.17215 * 359.97438 * 7 6 5 28 28 N 1.30445 * 108.02319 * 0.02562 * 27 7 6 29 29 H 1.09006 * 109.46626 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47059 * 299.98992 * 1 2 3 31 31 H 1.08994 * 109.47473 * 59.99741 * 1 2 3 32 32 H 1.08996 * 109.46892 * 60.00906 * 3 2 1 33 33 H 1.08995 * 109.47665 * 300.00173 * 3 2 1 34 34 H 1.08995 * 109.47223 * 60.00116 * 4 3 2 35 35 H 1.08995 * 109.46866 * 300.00307 * 4 3 2 36 36 H 1.07998 * 126.29079 * 0.02562 * 6 5 4 37 37 H 0.96999 * 119.99834 * 359.97438 * 10 8 7 38 38 H 1.08990 * 109.47507 * 300.00072 * 11 10 8 39 39 H 1.09001 * 109.46657 * 60.00813 * 11 10 8 40 40 H 1.09004 * 109.46134 * 301.34018 * 14 12 11 41 41 H 1.08995 * 109.45820 * 61.31463 * 14 12 11 42 42 H 1.09001 * 109.50094 * 58.58873 * 15 14 12 43 43 H 1.09004 * 109.49816 * 178.68089 * 15 14 12 44 44 H 1.09006 * 109.59206 * 174.42622 * 16 15 14 45 45 H 1.09006 * 109.58549 * 294.84428 * 16 15 14 46 46 H 0.97001 * 119.99983 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.56390 * 293.78930 * 26 17 16 48 48 H 1.08993 * 109.61850 * 173.35981 * 26 17 16 49 49 H 1.08005 * 125.99007 * 180.26859 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0219 2.9849 0.8922 7 6 5.3265 4.2838 0.5376 8 6 6.2627 5.1846 1.2344 9 8 6.8530 4.7996 2.2254 10 7 6.4644 6.4348 0.7732 11 6 7.3943 7.3301 1.4659 12 6 7.4389 8.6777 0.7427 13 1 6.4292 9.0798 0.6599 14 6 8.3139 9.6530 1.5336 15 6 8.3327 11.0111 0.8284 16 6 8.9344 10.8472 -0.5708 17 7 8.1870 9.8052 -1.2878 18 6 7.6472 10.0572 -2.5208 19 1 6.7703 9.5177 -2.8469 20 6 8.2269 11.0063 -3.3515 21 7 9.4579 11.4140 -3.1263 22 14 7.2600 11.7046 -4.7892 23 1 5.9100 11.0871 -4.8245 24 1 7.1272 13.1750 -4.6287 25 1 7.9741 11.4076 -6.0569 26 6 8.0298 8.4872 -0.6577 27 6 4.5739 4.5879 -0.6188 28 7 3.8678 3.5358 -0.9291 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8463 0.8900 33 1 1.6885 1.8465 -0.8899 34 1 3.8567 0.6441 -0.8908 35 1 3.8574 0.6437 0.8890 36 1 5.4257 2.4403 1.7328 37 1 5.9937 6.7418 -0.0175 38 1 7.0588 7.4790 2.4921 39 1 8.3902 6.8871 1.4697 40 1 7.9089 9.7713 2.5387 41 1 9.3294 9.2619 1.5951 42 1 7.3148 11.3915 0.7443 43 1 8.9370 11.7119 1.4046 44 1 8.8597 11.7896 -1.1135 45 1 9.9809 10.5538 -0.4865 46 1 9.8632 12.0769 -3.7070 47 1 9.0024 8.0010 -0.5809 48 1 7.3582 7.8727 -1.2572 49 1 4.5845 5.5256 -1.1546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602898053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:15 Heat of formation + Delta-G solvation = -13.429448 kcal Electronic energy + Delta-G solvation = -28482.771907 eV Core-core repulsion = 24446.143012 eV Total energy + Delta-G solvation = -4036.628895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.42758 -40.40168 -39.21173 -38.96133 -36.17924 -35.02716 -34.53372 -32.27339 -32.04874 -31.41204 -30.19820 -27.46078 -27.19912 -26.64484 -24.53470 -23.95750 -23.58919 -22.36898 -21.67662 -21.15066 -20.47324 -19.01855 -18.56964 -17.64352 -17.35118 -16.85101 -16.82493 -16.62441 -16.37436 -16.29581 -15.82081 -15.57155 -15.35913 -15.08077 -14.92883 -14.70714 -14.47941 -14.28899 -13.99809 -13.77885 -13.68848 -13.49515 -13.05717 -12.97099 -12.87511 -12.72441 -12.48861 -12.36063 -12.20392 -12.02919 -11.92353 -11.77668 -11.52955 -11.28602 -11.06107 -10.85860 -10.78755 -10.64976 -10.51058 -10.10146 -9.65413 -8.64635 -7.83896 -5.28774 0.50278 1.13369 1.19246 1.47770 1.50104 1.59995 2.37198 2.49698 2.53499 2.72339 3.30868 3.49979 3.64597 3.78896 3.85009 3.86783 4.04582 4.07727 4.09228 4.14725 4.18826 4.29823 4.44510 4.45581 4.48352 4.59921 4.62353 4.64559 4.68522 4.75629 4.82249 4.83472 4.94054 4.97915 5.05829 5.15412 5.28366 5.36364 5.38399 5.45215 5.56317 5.62069 5.70966 5.76870 5.82251 6.01332 6.42075 6.45800 6.67382 7.18164 7.32919 7.90132 8.41860 9.22451 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.002200 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.589607 B =12725.626681 C =14398.466463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.358 5.358 6 C 0.141 3.859 7 C -0.312 4.312 8 C 0.595 3.405 9 O -0.592 6.592 10 N -0.715 5.715 11 C 0.140 3.860 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.256 4.256 19 H 0.073 0.927 20 C -0.055 4.055 21 N -0.937 5.937 22 Si 0.964 3.036 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.296 1.296 26 C 0.152 3.848 27 C 0.088 3.912 28 N -0.320 5.320 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.212 0.788 37 H 0.409 0.591 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.051 0.949 45 H -0.009 1.009 46 H 0.248 0.752 47 H 0.005 0.995 48 H 0.058 0.942 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.759 -19.649 10.488 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.011 4.011 7 C -0.327 4.327 8 C 0.384 3.616 9 O -0.474 6.474 10 N -0.366 5.366 11 C 0.016 3.984 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.386 4.386 19 H 0.090 0.910 20 C -0.250 4.250 21 N -0.584 5.584 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.220 1.220 25 H -0.223 1.223 26 C 0.026 3.974 27 C -0.100 4.100 28 N -0.140 5.140 29 H 0.123 0.877 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.154 0.846 36 H 0.229 0.771 37 H 0.245 0.755 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.009 0.991 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.077 0.923 49 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.098 -20.635 10.240 28.103 hybrid contribution 0.308 1.475 -0.964 1.789 sum -15.790 -19.160 9.276 26.504 Atomic orbital electron populations 1.22967 0.78729 1.04292 1.00904 1.87751 1.21962 1.26949 1.95675 1.22549 0.92685 0.85281 1.01606 1.21746 0.92471 0.77465 1.07338 1.48522 1.32579 1.12451 1.20197 1.23352 0.89820 0.93782 0.94118 1.20237 1.11159 0.97077 1.04202 1.17437 0.80290 0.81216 0.82682 1.90730 1.51960 1.76475 1.28256 1.45768 1.45769 1.12952 1.32062 1.21251 0.92821 0.88473 0.95836 1.21715 1.00530 0.94097 0.95685 0.90384 1.21339 0.99372 0.94329 0.98485 1.21999 1.00804 0.97403 0.96712 1.20632 0.91436 0.92746 0.90503 1.44323 1.63417 1.08340 1.17113 1.19587 1.06137 1.20200 0.92676 0.90983 1.25798 0.96005 1.02753 1.00491 1.70207 1.13099 1.34171 1.40879 0.85246 0.78767 0.77766 0.78912 1.18678 1.21970 1.22347 1.21036 0.96884 0.86846 0.92608 1.24450 0.92630 0.98428 0.94491 1.77158 1.25139 0.97394 1.14267 0.87726 0.93085 0.93438 0.92464 0.92649 0.87844 0.84591 0.77094 0.75466 0.90857 0.92544 0.90105 0.92708 0.92769 0.91363 0.93077 0.99060 0.94314 0.97734 0.92335 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.40 10.70 -148.98 -1.59 -6.99 16 3 C 0.06 0.71 6.11 71.99 0.44 1.15 16 4 C 0.13 1.44 6.86 86.38 0.59 2.04 16 5 N -0.36 -6.10 3.65 -346.30 -1.26 -7.37 16 6 C 0.14 2.53 11.25 84.27 0.95 3.47 16 7 C -0.31 -6.97 6.13 -20.15 -0.12 -7.09 16 8 C 0.59 16.14 7.81 86.67 0.68 16.82 16 9 O -0.59 -19.75 16.90 -4.05 -0.07 -19.82 16 10 N -0.72 -17.96 5.32 -466.38 -2.48 -20.44 16 11 C 0.14 3.78 5.07 86.38 0.44 4.22 16 12 C -0.10 -3.03 2.37 -10.71 -0.03 -3.05 16 13 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.10 -2.93 5.17 30.62 0.16 -2.77 16 15 C -0.13 -4.68 6.08 30.67 0.19 -4.49 16 16 C 0.17 8.24 5.31 86.36 0.46 8.70 16 17 N -0.61 -29.66 3.00 -699.10 -2.09 -31.75 16 18 C -0.26 -13.66 9.58 84.03 0.81 -12.85 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 20 C -0.06 -3.07 4.91 84.86 0.42 -2.65 16 21 N -0.94 -55.56 11.19 21.65 0.24 -55.32 16 22 Si 0.96 44.42 29.59 68.60 2.03 46.44 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.15 5.92 5.60 86.36 0.48 6.40 16 27 C 0.09 1.81 11.50 85.65 0.99 2.80 16 28 N -0.32 -6.90 12.33 -56.27 -0.69 -7.59 16 29 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.14 0.78 8.06 -2.39 -0.02 0.76 16 36 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.41 9.01 6.65 -92.71 -0.62 8.40 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 2.79 6.04 -2.38 -0.01 2.77 16 45 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 46 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.06 2.15 7.14 -2.39 -0.02 2.13 16 49 H 0.21 3.33 7.50 -2.91 -0.02 3.31 16 Total: -1.00 -73.05 400.54 2.09 -70.96 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.32 Total: 17.72 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 7.69 Total: 14.16 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.29 Total: -122.47 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.66 Total: -26.81 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.05 2.09 -70.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.533 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds