Wall clock time and date at job start Tue Mar 31 2020 19:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99759 * 2 1 4 4 C 1.52997 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47045 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.74998 * 124.71737 * 5 4 3 7 7 C 1.38045 * 107.41585 * 179.90768 * 6 5 4 8 8 C 1.47430 * 126.41228 * 180.10385 * 7 6 5 9 9 O 1.21600 * 120.00193 * 0.27650 * 8 7 6 10 10 N 1.34780 * 119.99728 * 180.27309 * 8 7 6 11 11 C 1.46502 * 120.00103 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47155 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.49704 * 305.06044 * 12 11 10 14 14 C 1.53040 * 109.49482 * 184.99940 * 12 11 10 15 15 C 1.53046 * 109.53685 * 178.67985 * 14 12 11 16 16 C 1.53192 * 109.31068 * 61.36825 * 15 14 12 17 17 N 1.46937 * 108.77396 * 305.36334 * 16 15 14 18 18 C 1.36933 * 120.62523 * 233.58968 * 17 16 15 19 19 H 1.08004 * 119.99396 * 151.83650 * 18 17 16 20 20 C 1.38809 * 120.00494 * 331.82602 * 18 17 16 21 21 N 1.31620 * 119.99997 * 343.09076 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 163.08158 * 20 18 17 23 23 H 1.48499 * 109.46616 * 90.00859 * 22 20 18 24 24 H 1.48499 * 109.47230 * 210.00478 * 22 20 18 25 25 H 1.48491 * 109.47298 * 330.00734 * 22 20 18 26 26 C 1.46917 * 118.73472 * 53.61088 * 17 16 15 27 27 C 1.41291 * 107.17267 * 0.35742 * 7 6 5 28 28 N 1.30449 * 108.02091 * 359.78229 * 27 7 6 29 29 H 1.09002 * 109.47318 * 60.00100 * 1 2 3 30 30 H 1.09006 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47228 * 299.99870 * 1 2 3 32 32 H 1.08996 * 109.47018 * 299.99632 * 3 2 1 33 33 H 1.09001 * 109.47075 * 59.99938 * 3 2 1 34 34 H 1.08996 * 109.47315 * 300.00393 * 4 3 2 35 35 H 1.09001 * 109.46991 * 60.00221 * 4 3 2 36 36 H 1.07995 * 126.29290 * 0.02562 * 6 5 4 37 37 H 0.97005 * 120.00049 * 0.02562 * 10 8 7 38 38 H 1.09005 * 109.47073 * 300.00326 * 11 10 8 39 39 H 1.09000 * 109.47054 * 59.99789 * 11 10 8 40 40 H 1.08998 * 109.46385 * 298.69995 * 14 12 11 41 41 H 1.09001 * 109.46021 * 58.67874 * 14 12 11 42 42 H 1.08994 * 109.49708 * 181.31483 * 15 14 12 43 43 H 1.08999 * 109.49837 * 301.38365 * 15 14 12 44 44 H 1.08999 * 109.59102 * 65.15159 * 16 15 14 45 45 H 1.08997 * 109.58582 * 185.57981 * 16 15 14 46 46 H 0.96998 * 119.99769 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.58337 * 186.60508 * 26 17 16 48 48 H 1.08997 * 109.58808 * 66.18195 * 26 17 16 49 49 H 1.08000 * 125.99146 * 179.80388 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0168 2.9879 0.8957 7 6 5.3256 4.2846 0.5369 8 6 6.2599 5.1868 1.2345 9 8 6.8487 4.8033 2.2269 10 7 6.4615 6.4367 0.7721 11 6 7.3895 7.3334 1.4655 12 6 7.4337 8.6806 0.7417 13 1 7.6839 8.5220 -0.3073 14 6 8.4936 9.5742 1.3900 15 6 8.5616 10.9099 0.6459 16 6 7.2059 11.6160 0.7476 17 7 6.1608 10.7058 0.2594 18 6 5.2922 11.1032 -0.7217 19 1 4.8550 10.3713 -1.3847 20 6 4.9735 12.4467 -0.8642 21 7 5.2226 13.2896 0.1156 22 14 4.1914 13.0584 -2.4465 23 1 2.7132 12.9757 -2.3320 24 1 4.5914 14.4688 -2.6834 25 1 4.6479 12.2171 -3.5817 26 6 6.0653 9.3615 0.8444 27 6 4.5740 4.5873 -0.6206 28 7 3.8686 3.5347 -0.9305 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.8567 0.6440 0.8908 35 1 3.8574 0.6437 -0.8891 36 1 5.4159 2.4461 1.7404 37 1 5.9916 6.7427 -0.0194 38 1 7.0520 7.4833 2.4911 39 1 8.3857 6.8911 1.4720 40 1 8.2302 9.7524 2.4325 41 1 9.4644 9.0811 1.3398 42 1 9.3327 11.5368 1.0935 43 1 8.8013 10.7307 -0.4022 44 1 7.0069 11.8770 1.7870 45 1 7.2178 12.5193 0.1377 46 1 5.0002 14.2285 0.0159 47 1 5.3246 8.7772 0.2984 48 1 5.7732 9.4386 1.8917 49 1 4.5824 5.5256 -1.1554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602898062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:21 Heat of formation + Delta-G solvation = 8.939928 kcal Electronic energy + Delta-G solvation = -28510.481989 eV Core-core repulsion = 24474.823103 eV Total energy + Delta-G solvation = -4035.658886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.62154 -39.24895 -38.45223 -37.67385 -34.75416 -34.28419 -32.94461 -30.81557 -30.48854 -30.40725 -29.35902 -26.86010 -25.54614 -25.23063 -23.87872 -22.80215 -22.00942 -21.10234 -20.75857 -20.04042 -19.05656 -18.12192 -17.03885 -16.80352 -16.59909 -15.95748 -15.75988 -15.57697 -15.28783 -14.94300 -14.76351 -14.48678 -14.09640 -13.82296 -13.74396 -13.44049 -13.41266 -13.04314 -12.75176 -12.56087 -12.30848 -12.21815 -12.15443 -12.10432 -11.87451 -11.29931 -11.20521 -11.00834 -10.69210 -10.48330 -10.27328 -10.22841 -10.16455 -9.94558 -9.88375 -9.82386 -9.53625 -9.40620 -9.05029 -8.71669 -8.46280 -6.66365 -5.79042 -3.21842 1.31267 1.85763 2.01976 3.23963 3.36517 3.41759 3.43927 3.45650 3.51183 4.10610 4.35376 4.48046 4.50744 4.55888 4.69325 4.82807 4.84306 4.97920 5.04270 5.12567 5.15071 5.17588 5.29211 5.32440 5.46668 5.47658 5.55818 5.64671 5.86296 6.00324 6.03208 6.17572 6.27142 6.35940 6.40200 6.42441 6.54954 6.58626 6.61319 6.72761 6.80274 6.87941 6.99072 7.26578 7.40987 7.67757 7.71477 7.78535 8.40152 8.44724 9.20901 9.84620 10.41671 11.29244 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.002294 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.487958 B =12203.781416 C =14123.802312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.288 4.288 8 C 0.593 3.407 9 O -0.557 6.557 10 N -0.719 5.719 11 C 0.130 3.870 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.154 3.846 27 C 0.088 3.912 28 N -0.297 5.297 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.189 0.811 37 H 0.402 0.598 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.050 0.950 48 H 0.019 0.981 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -23.344 0.619 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.302 4.302 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.369 5.369 11 C 0.006 3.994 12 C -0.138 4.138 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.044 3.956 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.101 4.101 28 N -0.116 5.116 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.206 0.794 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.037 0.963 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.900 -24.226 0.499 24.404 hybrid contribution -0.322 1.185 -0.582 1.359 sum -3.222 -23.041 -0.083 23.265 Atomic orbital electron populations 1.22791 0.79823 1.03135 1.00515 1.87770 1.20687 1.26876 1.95636 1.22663 0.92416 0.85406 1.02286 1.21478 0.92791 0.78668 1.05683 1.48331 1.33251 1.12031 1.20823 1.22977 0.90806 0.94314 0.94006 1.20332 1.10360 0.96412 1.03140 1.17185 0.80519 0.81124 0.83158 1.90752 1.50482 1.75998 1.26476 1.45833 1.46268 1.12973 1.31844 1.21446 0.92466 0.89125 0.96370 1.21954 0.99605 0.92628 0.99662 0.90849 1.21340 0.96811 0.96204 0.99416 1.22173 1.00484 0.96001 0.99446 1.20793 0.83676 0.93490 0.97690 1.44036 1.33786 1.10239 1.43311 1.19136 1.20831 0.91961 1.06291 0.91777 1.25047 0.99512 0.97539 0.97560 1.70037 1.51250 1.03351 1.29943 0.86327 0.79033 0.78006 0.83576 1.21434 1.21596 1.20488 1.20900 0.92476 0.87630 0.96286 1.24198 0.93123 0.97829 0.94911 1.77189 1.24220 0.96823 1.13373 0.93618 0.89142 0.93721 0.91345 0.92477 0.87307 0.88317 0.79408 0.76354 0.91575 0.91960 0.92480 0.93438 0.93230 0.92757 0.96468 0.89620 0.93651 0.93132 0.96348 0.78977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.98 10.70 -35.23 -0.38 -3.36 16 3 C 0.05 0.36 6.11 37.16 0.23 0.59 16 4 C 0.14 0.89 6.86 -4.04 -0.03 0.86 16 5 N -0.36 -3.44 3.65 -60.81 -0.22 -3.67 16 6 C 0.13 1.29 11.25 -16.56 -0.19 1.11 16 7 C -0.29 -3.43 6.13 -105.06 -0.64 -4.07 16 8 C 0.59 8.45 7.81 -12.52 -0.10 8.35 16 9 O -0.56 -9.64 16.90 5.28 0.09 -9.55 16 10 N -0.72 -9.62 5.32 -61.38 -0.33 -9.94 16 11 C 0.13 1.88 5.07 -4.04 -0.02 1.85 16 12 C -0.12 -1.90 2.37 -90.50 -0.21 -2.11 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.62 5.17 -26.69 -0.14 -1.75 16 15 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 16 C 0.17 3.96 5.30 -3.70 -0.02 3.94 16 17 N -0.59 -14.32 2.99 -172.32 -0.52 -14.83 16 18 C -0.25 -6.72 9.58 -15.06 -0.14 -6.87 16 19 H 0.06 1.65 7.89 -52.48 -0.41 1.24 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 22 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.15 3.04 5.60 -3.72 -0.02 3.02 16 27 C 0.09 0.96 11.50 -16.98 -0.20 0.77 16 28 N -0.30 -3.40 12.33 30.86 0.38 -3.02 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.47 8.06 -51.93 -0.42 0.06 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.19 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.40 4.77 6.66 -40.82 -0.27 4.50 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.19 1.68 7.50 -52.49 -0.39 1.29 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -33.41 400.58 -8.04 -41.45 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.08 Total: 1.70 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.62 Total: 4.15 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.06 Total: -56.73 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.29 Total: -12.91 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.41 -8.04 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.390 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds