Wall clock time and date at job start Tue Mar 31 2020 19:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99759 * 2 1 4 4 C 1.52997 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47045 * 179.97438 * 4 3 2 6 6 C 1.34264 * 125.74998 * 124.71737 * 5 4 3 7 7 C 1.38045 * 107.41585 * 179.90768 * 6 5 4 8 8 C 1.47430 * 126.41228 * 180.10385 * 7 6 5 9 9 O 1.21600 * 120.00193 * 0.27650 * 8 7 6 10 10 N 1.34780 * 119.99728 * 180.27309 * 8 7 6 11 11 C 1.46502 * 120.00103 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47155 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.49704 * 305.06044 * 12 11 10 14 14 C 1.53040 * 109.49482 * 184.99940 * 12 11 10 15 15 C 1.53046 * 109.53685 * 178.67985 * 14 12 11 16 16 C 1.53192 * 109.31068 * 61.36825 * 15 14 12 17 17 N 1.46937 * 108.77396 * 305.36334 * 16 15 14 18 18 C 1.36933 * 120.62523 * 233.58968 * 17 16 15 19 19 H 1.08004 * 119.99396 * 151.83650 * 18 17 16 20 20 C 1.38809 * 120.00494 * 331.82602 * 18 17 16 21 21 N 1.31620 * 119.99997 * 343.09076 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 163.08158 * 20 18 17 23 23 H 1.48499 * 109.46616 * 90.00859 * 22 20 18 24 24 H 1.48499 * 109.47230 * 210.00478 * 22 20 18 25 25 H 1.48491 * 109.47298 * 330.00734 * 22 20 18 26 26 C 1.46917 * 118.73472 * 53.61088 * 17 16 15 27 27 C 1.41291 * 107.17267 * 0.35742 * 7 6 5 28 28 N 1.30449 * 108.02091 * 359.78229 * 27 7 6 29 29 H 1.09002 * 109.47318 * 60.00100 * 1 2 3 30 30 H 1.09006 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47228 * 299.99870 * 1 2 3 32 32 H 1.08996 * 109.47018 * 299.99632 * 3 2 1 33 33 H 1.09001 * 109.47075 * 59.99938 * 3 2 1 34 34 H 1.08996 * 109.47315 * 300.00393 * 4 3 2 35 35 H 1.09001 * 109.46991 * 60.00221 * 4 3 2 36 36 H 1.07995 * 126.29290 * 0.02562 * 6 5 4 37 37 H 0.97005 * 120.00049 * 0.02562 * 10 8 7 38 38 H 1.09005 * 109.47073 * 300.00326 * 11 10 8 39 39 H 1.09000 * 109.47054 * 59.99789 * 11 10 8 40 40 H 1.08998 * 109.46385 * 298.69995 * 14 12 11 41 41 H 1.09001 * 109.46021 * 58.67874 * 14 12 11 42 42 H 1.08994 * 109.49708 * 181.31483 * 15 14 12 43 43 H 1.08999 * 109.49837 * 301.38365 * 15 14 12 44 44 H 1.08999 * 109.59102 * 65.15159 * 16 15 14 45 45 H 1.08997 * 109.58582 * 185.57981 * 16 15 14 46 46 H 0.96998 * 119.99769 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.58337 * 186.60508 * 26 17 16 48 48 H 1.08997 * 109.58808 * 66.18195 * 26 17 16 49 49 H 1.08000 * 125.99146 * 179.80388 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0168 2.9879 0.8957 7 6 5.3256 4.2846 0.5369 8 6 6.2599 5.1868 1.2345 9 8 6.8487 4.8033 2.2269 10 7 6.4615 6.4367 0.7721 11 6 7.3895 7.3334 1.4655 12 6 7.4337 8.6806 0.7417 13 1 7.6839 8.5220 -0.3073 14 6 8.4936 9.5742 1.3900 15 6 8.5616 10.9099 0.6459 16 6 7.2059 11.6160 0.7476 17 7 6.1608 10.7058 0.2594 18 6 5.2922 11.1032 -0.7217 19 1 4.8550 10.3713 -1.3847 20 6 4.9735 12.4467 -0.8642 21 7 5.2226 13.2896 0.1156 22 14 4.1914 13.0584 -2.4465 23 1 2.7132 12.9757 -2.3320 24 1 4.5914 14.4688 -2.6834 25 1 4.6479 12.2171 -3.5817 26 6 6.0653 9.3615 0.8444 27 6 4.5740 4.5873 -0.6206 28 7 3.8686 3.5347 -0.9305 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.8567 0.6440 0.8908 35 1 3.8574 0.6437 -0.8891 36 1 5.4159 2.4461 1.7404 37 1 5.9916 6.7427 -0.0194 38 1 7.0520 7.4833 2.4911 39 1 8.3857 6.8911 1.4720 40 1 8.2302 9.7524 2.4325 41 1 9.4644 9.0811 1.3398 42 1 9.3327 11.5368 1.0935 43 1 8.8013 10.7307 -0.4022 44 1 7.0069 11.8770 1.7870 45 1 7.2178 12.5193 0.1377 46 1 5.0002 14.2285 0.0159 47 1 5.3246 8.7772 0.2984 48 1 5.7732 9.4386 1.8917 49 1 4.5824 5.5256 -1.1554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602898062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:20 Heat of formation + Delta-G solvation = -13.502008 kcal Electronic energy + Delta-G solvation = -28511.455145 eV Core-core repulsion = 24474.823103 eV Total energy + Delta-G solvation = -4036.632041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.42677 -40.40131 -39.21144 -38.96371 -36.17725 -35.02751 -34.53312 -32.27176 -32.04872 -31.41208 -30.20043 -27.46371 -27.19718 -26.64502 -24.53756 -23.95577 -23.58853 -22.36863 -21.67610 -21.15204 -20.47376 -19.01912 -18.56685 -17.64332 -17.35625 -16.85614 -16.82633 -16.60511 -16.38640 -16.30229 -15.75925 -15.67634 -15.30562 -15.08026 -14.92993 -14.72734 -14.47202 -14.28964 -13.99261 -13.78024 -13.68661 -13.49578 -13.05541 -12.97399 -12.85063 -12.72847 -12.46377 -12.36622 -12.24310 -12.03072 -11.95206 -11.77707 -11.52880 -11.28390 -11.06137 -10.85989 -10.79253 -10.64986 -10.50187 -10.10144 -9.65417 -8.63688 -7.83822 -5.29220 0.50122 1.12759 1.20064 1.48277 1.50214 1.59336 2.37319 2.49611 2.53595 2.71609 3.31194 3.49845 3.64724 3.78842 3.84918 3.86673 4.04639 4.07735 4.09245 4.14725 4.18769 4.29553 4.44160 4.45656 4.47760 4.59881 4.62146 4.64526 4.68333 4.75587 4.81688 4.83444 4.93995 4.97914 5.05871 5.15389 5.28373 5.36351 5.38451 5.45214 5.56264 5.61861 5.70821 5.76791 5.82188 6.00475 6.42303 6.45779 6.67363 7.18312 7.32883 7.90142 8.42262 9.22439 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.002294 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.487958 B =12203.781416 C =14123.802312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.055 3.945 4 C 0.131 3.869 5 N -0.358 5.358 6 C 0.141 3.859 7 C -0.312 4.312 8 C 0.595 3.405 9 O -0.592 6.592 10 N -0.715 5.715 11 C 0.140 3.860 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.257 4.257 19 H 0.072 0.928 20 C -0.055 4.055 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.152 3.848 27 C 0.088 3.912 28 N -0.320 5.320 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.212 0.788 37 H 0.409 0.591 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.053 0.947 44 H -0.008 1.008 45 H 0.050 0.950 46 H 0.248 0.752 47 H 0.058 0.942 48 H 0.005 0.995 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 -25.660 -0.015 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.023 4.023 4 C 0.011 3.989 5 N -0.138 5.138 6 C -0.011 4.011 7 C -0.327 4.327 8 C 0.384 3.616 9 O -0.474 6.474 10 N -0.366 5.366 11 C 0.016 3.984 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.388 4.388 19 H 0.089 0.911 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.192 1.192 26 C 0.026 3.974 27 C -0.100 4.100 28 N -0.140 5.140 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.229 0.771 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.010 0.990 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.023 0.977 49 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.511 -26.580 -0.165 26.699 hybrid contribution -0.520 1.818 -0.345 1.922 sum -3.031 -24.762 -0.509 24.952 Atomic orbital electron populations 1.22968 0.78770 1.04306 1.00862 1.87746 1.21912 1.26897 1.95670 1.22562 0.92869 0.85292 1.01534 1.21744 0.92289 0.77462 1.07427 1.48529 1.32746 1.12460 1.20020 1.23354 0.89886 0.93799 0.94035 1.20238 1.11261 0.97106 1.04075 1.17438 0.80275 0.81241 0.82670 1.90729 1.52008 1.76653 1.28027 1.45773 1.46068 1.12768 1.31951 1.21251 0.93255 0.88284 0.95589 1.21713 0.97065 0.93048 1.00209 0.90408 1.21340 0.98482 0.94950 0.98758 1.22001 0.97647 0.97188 1.00090 1.20626 0.86381 0.93043 0.95230 1.44309 1.33822 1.11716 1.43353 1.19533 1.20314 0.92220 1.06689 0.91062 1.25809 1.00882 0.97929 1.00338 1.70200 1.53138 1.03192 1.31805 0.85315 0.77967 0.77027 0.80372 1.21334 1.22272 1.19237 1.21034 0.95177 0.85990 0.95163 1.24451 0.92548 0.98358 0.94640 1.77160 1.24878 0.97458 1.14454 0.93439 0.87636 0.93232 0.92645 0.92712 0.84589 0.87599 0.77094 0.75467 0.92534 0.90873 0.92695 0.90123 0.91358 0.92782 0.99038 0.93120 0.94299 0.92352 0.97734 0.77557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.56 10.70 -148.98 -1.59 -7.15 16 3 C 0.06 0.72 6.11 71.98 0.44 1.16 16 4 C 0.13 1.45 6.86 86.38 0.59 2.04 16 5 N -0.36 -6.10 3.65 -346.31 -1.26 -7.37 16 6 C 0.14 2.53 11.25 84.28 0.95 3.48 16 7 C -0.31 -6.98 6.13 -20.15 -0.12 -7.10 16 8 C 0.59 16.16 7.81 86.66 0.68 16.84 16 9 O -0.59 -19.77 16.90 -4.03 -0.07 -19.83 16 10 N -0.72 -18.00 5.32 -466.36 -2.48 -20.48 16 11 C 0.14 3.79 5.07 86.38 0.44 4.22 16 12 C -0.10 -3.04 2.37 -10.72 -0.03 -3.06 16 13 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.10 -2.93 5.17 30.62 0.16 -2.78 16 15 C -0.13 -4.68 6.08 30.67 0.19 -4.50 16 16 C 0.17 8.26 5.30 86.36 0.46 8.71 16 17 N -0.61 -29.68 2.99 -699.10 -2.09 -31.77 16 18 C -0.26 -13.74 9.58 84.03 0.81 -12.94 16 19 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 20 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 21 N -0.94 -55.48 11.20 21.65 0.24 -55.23 16 22 Si 0.96 44.33 29.59 68.60 2.03 46.36 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.15 5.93 5.60 86.36 0.48 6.41 16 27 C 0.09 1.81 11.50 85.65 0.99 2.80 16 28 N -0.32 -6.90 12.33 -56.27 -0.69 -7.59 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.14 0.78 8.06 -2.39 -0.02 0.76 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.41 9.03 6.66 -92.70 -0.62 8.42 16 38 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.05 2.76 6.06 -2.39 -0.01 2.75 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.06 2.14 7.14 -2.38 -0.02 2.12 16 48 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.21 3.34 7.50 -2.91 -0.02 3.31 16 Total: -1.00 -72.89 400.58 2.09 -70.80 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.32 Total: 18.07 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.69 Total: 14.20 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -6.29 Total: -122.44 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.66 Total: -26.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.89 2.09 -70.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602898062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.300 kcal (2) G-P(sol) polarization free energy of solvation -72.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds