Wall clock time and date at job start Tue Mar 31 2020 19:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99940 * 2 1 4 4 C 1.53003 * 109.47098 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47181 * 65.00210 * 4 3 2 6 6 C 1.34774 * 120.00090 * 89.99517 * 5 4 3 7 7 O 1.21592 * 120.00166 * 4.86039 * 6 5 4 8 8 N 1.34775 * 119.99867 * 184.58290 * 6 5 4 9 9 C 1.40201 * 120.00051 * 174.94369 * 8 6 5 10 10 C 1.40403 * 125.96902 * 359.71352 * 9 8 6 11 11 C 1.35248 * 107.86748 * 179.88520 * 10 9 8 12 12 N 1.34968 * 107.85666 * 0.37745 * 11 10 9 13 13 C 1.46499 * 125.97880 * 179.72297 * 12 11 10 14 14 C 1.50694 * 109.47199 * 125.01475 * 13 12 11 15 15 H 1.08007 * 119.99938 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00258 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00150 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99637 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47421 * 90.00085 * 18 16 14 20 20 H 1.48504 * 109.46706 * 209.99776 * 18 16 14 21 21 H 1.48494 * 109.47178 * 329.99546 * 18 16 14 22 22 N 1.31204 * 125.97540 * 180.02562 * 9 8 6 23 23 C 1.46499 * 119.99999 * 270.00253 * 5 4 3 24 24 C 1.54263 * 110.03104 * 232.33242 * 23 5 4 25 25 C 1.54968 * 104.16110 * 217.13226 * 24 23 5 26 26 C 1.54892 * 102.77557 * 37.88751 * 25 24 23 27 27 C 1.53872 * 110.03640 * 115.11263 * 23 5 4 28 28 H 1.08997 * 109.46804 * 60.00305 * 1 2 3 29 29 H 1.09007 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47252 * 299.99909 * 1 2 3 31 31 H 1.09000 * 109.46874 * 60.00098 * 3 2 1 32 32 H 1.08991 * 109.47163 * 299.99782 * 3 2 1 33 33 H 1.09000 * 109.47470 * 305.00205 * 4 3 2 34 34 H 1.09003 * 109.47120 * 185.00050 * 4 3 2 35 35 H 0.97004 * 120.00616 * 354.94816 * 8 6 5 36 36 H 1.08003 * 126.06743 * 0.02562 * 10 9 8 37 37 H 1.07995 * 126.07269 * 180.11697 * 11 10 9 38 38 H 1.08994 * 109.47094 * 245.02235 * 13 12 11 39 39 H 1.09006 * 109.46651 * 5.02107 * 13 12 11 40 40 H 0.96991 * 119.99726 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.01799 * 353.71966 * 23 5 4 42 42 H 1.08998 * 110.48717 * 335.77670 * 24 23 5 43 43 H 1.08997 * 110.48813 * 98.42437 * 24 23 5 44 44 H 1.08991 * 110.72170 * 279.57600 * 25 24 23 45 45 H 1.08995 * 110.92557 * 156.29249 * 25 24 23 46 46 H 1.08993 * 110.48664 * 203.40463 * 26 25 24 47 47 H 1.08999 * 110.59981 * 80.81217 * 26 25 24 48 48 H 1.09006 * 110.03492 * 238.57015 * 27 23 5 49 49 H 1.08999 * 110.03295 * 359.95155 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2633 1.3330 -2.3200 7 8 4.2413 2.5446 -2.2208 8 7 4.5797 0.7588 -3.4976 9 6 4.7740 1.5544 -4.6355 10 6 4.6656 2.9531 -4.6922 11 6 4.9286 3.3385 -5.9617 12 7 5.1856 2.2292 -6.6862 13 6 5.5133 2.1902 -8.1135 14 6 6.8160 1.4587 -8.3100 15 1 7.3466 1.0620 -7.4570 16 6 7.3302 1.2948 -9.5788 17 7 8.4674 0.6567 -9.7502 18 14 6.4122 1.9803 -11.0542 19 1 6.8665 3.3691 -11.3184 20 1 6.6862 1.1350 -12.2440 21 1 4.9541 1.9815 -10.7731 22 7 5.0832 1.1215 -5.8349 23 6 4.1063 -0.8925 -1.3403 24 6 5.5067 -1.2670 -1.8680 25 6 5.2531 -2.4963 -2.7767 26 6 3.9083 -2.1454 -3.4605 27 6 3.0903 -1.4510 -2.3521 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1766 0.0902 35 1 4.6730 -0.2048 -3.5579 36 1 4.4185 3.6056 -3.8679 37 1 4.9284 4.3534 -6.3310 38 1 4.7209 1.6730 -8.6543 39 1 5.6074 3.2080 -8.4926 40 1 8.8288 0.5412 -10.6428 41 1 3.9437 -1.3424 -0.3609 42 1 5.9285 -0.4454 -2.4469 43 1 6.1672 -1.5317 -1.0424 44 1 5.1580 -3.4037 -2.1804 45 1 6.0462 -2.6036 -3.5167 46 1 3.4035 -3.0510 -3.7967 47 1 4.0695 -1.4663 -4.2977 48 1 2.4352 -2.1726 -1.8638 49 1 2.5002 -0.6384 -2.7759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610559362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:11 Heat of formation + Delta-G solvation = 32.433837 kcal Electronic energy + Delta-G solvation = -30485.586780 eV Core-core repulsion = 26450.946666 eV Total energy + Delta-G solvation = -4034.640114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28650 -40.07819 -38.07373 -37.81586 -35.25529 -34.08835 -33.18083 -31.29239 -30.21317 -29.26809 -28.88270 -27.64659 -27.05646 -26.28376 -23.77619 -22.45827 -21.54041 -21.28731 -20.69655 -19.80130 -19.17217 -17.44531 -17.15905 -16.81471 -16.48133 -16.27804 -15.96187 -15.47661 -15.41069 -15.07357 -14.89624 -14.62055 -14.32723 -13.68599 -13.59457 -13.41249 -13.06603 -12.97144 -12.63919 -12.50077 -12.25707 -12.14074 -12.06945 -11.81810 -11.74036 -11.29607 -11.26379 -11.20280 -11.11911 -10.91238 -10.76238 -10.66667 -10.53459 -10.02280 -9.93923 -9.91916 -9.64907 -9.45781 -8.77289 -8.73597 -8.08943 -7.38747 -6.20853 -4.22664 2.42302 2.65126 3.09411 3.17041 3.24065 3.24769 3.41011 3.54506 3.85594 4.13500 4.25359 4.37050 4.43850 4.72216 4.84729 4.89874 5.01175 5.07212 5.12040 5.15579 5.21183 5.22602 5.29823 5.36165 5.36765 5.43404 5.46301 5.51753 5.61497 5.70621 5.78300 5.82188 5.88956 5.99874 6.08821 6.19142 6.25511 6.41008 6.49477 6.53116 6.66248 6.80346 6.86950 7.00044 7.31494 7.51212 7.87462 7.93187 8.37691 8.64970 8.67701 8.89808 9.34463 10.91941 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.002939 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.920217 B = 9524.977898 C =10223.654022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.617 5.617 6 C 0.715 3.285 7 O -0.572 6.572 8 N -0.650 5.650 9 C 0.275 3.725 10 C -0.283 4.283 11 C 0.050 3.950 12 N -0.322 5.322 13 C 0.233 3.767 14 C -0.533 4.533 15 H 0.086 0.914 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.301 5.301 23 C 0.141 3.859 24 C -0.163 4.163 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.137 4.137 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.416 0.584 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.268 0.732 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 -3.125 20.677 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.036 4.036 4 C 0.014 3.986 5 N -0.353 5.353 6 C 0.416 3.584 7 O -0.448 6.448 8 N -0.309 5.309 9 C 0.021 3.979 10 C -0.315 4.315 11 C -0.100 4.100 12 N -0.103 5.103 13 C 0.114 3.886 14 C -0.571 4.571 15 H 0.104 0.896 16 C -0.128 4.128 17 N -0.526 5.526 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 N -0.132 5.132 23 C 0.037 3.963 24 C -0.202 4.202 25 C -0.164 4.164 26 C -0.182 4.182 27 C -0.176 4.176 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.262 0.738 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.470 -3.518 19.774 24.183 hybrid contribution -0.698 0.745 -0.484 1.129 sum -14.168 -2.773 19.290 24.094 Atomic orbital electron populations 1.22701 0.81355 1.02514 0.99831 1.87875 1.19372 1.27757 1.95411 1.23081 0.94676 0.85034 1.00833 1.21415 0.91746 1.00474 0.84995 1.47211 1.70829 1.05968 1.11326 1.15621 0.77848 0.85017 0.79878 1.90834 1.58998 1.11723 1.83223 1.42637 1.71891 1.10971 1.05429 1.18931 1.01610 0.90496 0.86913 1.21536 1.18532 0.93543 0.97844 1.22531 1.01737 0.93491 0.92197 1.48576 1.50293 1.02002 1.09441 1.20017 0.98284 0.98651 0.71694 1.21124 1.03944 1.36646 0.95379 0.89624 1.24832 0.94805 0.94679 0.98456 1.69874 1.18839 1.40958 1.22915 0.86911 0.80748 0.79588 0.82889 1.19736 1.20581 1.18868 1.77369 1.26981 1.10287 0.98561 1.21844 0.94166 0.79403 1.00843 1.23200 0.96898 0.99419 1.00653 1.22535 0.97624 0.97526 0.98716 1.22607 0.96252 1.01256 0.98084 1.22638 0.98026 1.00750 0.96136 0.94220 0.89816 0.94317 0.92466 0.92652 0.89634 0.87909 0.73807 0.82108 0.81514 0.94130 0.93407 0.92228 0.88058 0.89941 0.90232 0.90707 0.90407 0.90435 0.90673 0.90397 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.57 10.26 -35.23 -0.36 -3.93 16 3 C 0.04 0.38 6.28 37.16 0.23 0.61 16 4 C 0.14 1.30 5.85 -4.04 -0.02 1.28 16 5 N -0.62 -7.40 2.36 -170.52 -0.40 -7.80 16 6 C 0.72 11.54 7.15 -86.92 -0.62 10.92 16 7 O -0.57 -10.58 13.05 5.28 0.07 -10.51 16 8 N -0.65 -11.31 3.92 -15.51 -0.06 -11.37 16 9 C 0.28 5.79 8.11 -154.36 -1.25 4.54 16 10 C -0.28 -5.75 9.61 -39.83 -0.38 -6.13 16 11 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 12 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 13 C 0.23 5.59 5.33 -5.20 -0.03 5.56 16 14 C -0.53 -15.18 9.79 -34.44 -0.34 -15.52 16 15 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 22 N -0.30 -7.10 12.42 31.44 0.39 -6.71 16 23 C 0.14 1.43 2.96 -66.82 -0.20 1.23 16 24 C -0.16 -1.74 5.85 -25.03 -0.15 -1.88 16 25 C -0.13 -1.26 6.81 -24.69 -0.17 -1.43 16 26 C -0.14 -1.58 6.13 -25.07 -0.15 -1.74 16 27 C -0.14 -1.43 5.79 -25.61 -0.15 -1.57 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.62 7.89 -51.93 -0.41 0.21 16 34 H 0.10 1.03 7.36 -51.93 -0.38 0.65 16 35 H 0.42 6.51 1.88 -40.82 -0.08 6.43 16 36 H 0.16 3.18 5.93 -52.48 -0.31 2.87 16 37 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 38 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 39 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.10 0.85 7.80 -51.93 -0.40 0.44 16 42 H 0.08 1.13 5.40 -51.93 -0.28 0.85 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.05 6.42 -51.93 -0.33 0.71 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.91 7.36 -51.93 -0.38 0.53 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -34.08 386.00 -8.66 -42.75 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.58 Total: 9.75 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.41 Total: 0.06 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.47 Total: -59.54 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.29 Total: -14.44 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.08 -8.66 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610559362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.183 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds