Wall clock time and date at job start Tue Mar 31 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99940 * 2 1 4 4 C 1.53003 * 109.47098 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47181 * 65.00210 * 4 3 2 6 6 C 1.34774 * 120.00090 * 89.99517 * 5 4 3 7 7 O 1.21592 * 120.00166 * 4.86039 * 6 5 4 8 8 N 1.34775 * 119.99867 * 184.58290 * 6 5 4 9 9 C 1.40201 * 120.00051 * 174.94369 * 8 6 5 10 10 C 1.40403 * 125.96902 * 359.71352 * 9 8 6 11 11 C 1.35248 * 107.86748 * 179.88520 * 10 9 8 12 12 N 1.34968 * 107.85666 * 0.37745 * 11 10 9 13 13 C 1.46499 * 125.97880 * 179.72297 * 12 11 10 14 14 C 1.50694 * 109.47199 * 125.01475 * 13 12 11 15 15 H 1.08007 * 119.99938 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00258 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00150 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99637 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47421 * 90.00085 * 18 16 14 20 20 H 1.48504 * 109.46706 * 209.99776 * 18 16 14 21 21 H 1.48494 * 109.47178 * 329.99546 * 18 16 14 22 22 N 1.31204 * 125.97540 * 180.02562 * 9 8 6 23 23 C 1.46499 * 119.99999 * 270.00253 * 5 4 3 24 24 C 1.54263 * 110.03104 * 232.33242 * 23 5 4 25 25 C 1.54968 * 104.16110 * 217.13226 * 24 23 5 26 26 C 1.54892 * 102.77557 * 37.88751 * 25 24 23 27 27 C 1.53872 * 110.03640 * 115.11263 * 23 5 4 28 28 H 1.08997 * 109.46804 * 60.00305 * 1 2 3 29 29 H 1.09007 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47252 * 299.99909 * 1 2 3 31 31 H 1.09000 * 109.46874 * 60.00098 * 3 2 1 32 32 H 1.08991 * 109.47163 * 299.99782 * 3 2 1 33 33 H 1.09000 * 109.47470 * 305.00205 * 4 3 2 34 34 H 1.09003 * 109.47120 * 185.00050 * 4 3 2 35 35 H 0.97004 * 120.00616 * 354.94816 * 8 6 5 36 36 H 1.08003 * 126.06743 * 0.02562 * 10 9 8 37 37 H 1.07995 * 126.07269 * 180.11697 * 11 10 9 38 38 H 1.08994 * 109.47094 * 245.02235 * 13 12 11 39 39 H 1.09006 * 109.46651 * 5.02107 * 13 12 11 40 40 H 0.96991 * 119.99726 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.01799 * 353.71966 * 23 5 4 42 42 H 1.08998 * 110.48717 * 335.77670 * 24 23 5 43 43 H 1.08997 * 110.48813 * 98.42437 * 24 23 5 44 44 H 1.08991 * 110.72170 * 279.57600 * 25 24 23 45 45 H 1.08995 * 110.92557 * 156.29249 * 25 24 23 46 46 H 1.08993 * 110.48664 * 203.40463 * 26 25 24 47 47 H 1.08999 * 110.59981 * 80.81217 * 26 25 24 48 48 H 1.09006 * 110.03492 * 238.57015 * 27 23 5 49 49 H 1.08999 * 110.03295 * 359.95155 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2633 1.3330 -2.3200 7 8 4.2413 2.5446 -2.2208 8 7 4.5797 0.7588 -3.4976 9 6 4.7740 1.5544 -4.6355 10 6 4.6656 2.9531 -4.6922 11 6 4.9286 3.3385 -5.9617 12 7 5.1856 2.2292 -6.6862 13 6 5.5133 2.1902 -8.1135 14 6 6.8160 1.4587 -8.3100 15 1 7.3466 1.0620 -7.4570 16 6 7.3302 1.2948 -9.5788 17 7 8.4674 0.6567 -9.7502 18 14 6.4122 1.9803 -11.0542 19 1 6.8665 3.3691 -11.3184 20 1 6.6862 1.1350 -12.2440 21 1 4.9541 1.9815 -10.7731 22 7 5.0832 1.1215 -5.8349 23 6 4.1063 -0.8925 -1.3403 24 6 5.5067 -1.2670 -1.8680 25 6 5.2531 -2.4963 -2.7767 26 6 3.9083 -2.1454 -3.4605 27 6 3.0903 -1.4510 -2.3521 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1766 0.0902 35 1 4.6730 -0.2048 -3.5579 36 1 4.4185 3.6056 -3.8679 37 1 4.9284 4.3534 -6.3310 38 1 4.7209 1.6730 -8.6543 39 1 5.6074 3.2080 -8.4926 40 1 8.8288 0.5412 -10.6428 41 1 3.9437 -1.3424 -0.3609 42 1 5.9285 -0.4454 -2.4469 43 1 6.1672 -1.5317 -1.0424 44 1 5.1580 -3.4037 -2.1804 45 1 6.0462 -2.6036 -3.5167 46 1 3.4035 -3.0510 -3.7967 47 1 4.0695 -1.4663 -4.2977 48 1 2.4352 -2.1726 -1.8638 49 1 2.5002 -0.6384 -2.7759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610559362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:10 Heat of formation + Delta-G solvation = 10.819045 kcal Electronic energy + Delta-G solvation = -30486.524067 eV Core-core repulsion = 26450.946666 eV Total energy + Delta-G solvation = -4035.577401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.57730 -41.53842 -38.92489 -38.77520 -36.50139 -35.44620 -35.00906 -33.09229 -31.23389 -30.79952 -29.75311 -29.08230 -28.29136 -27.02752 -25.05824 -24.03469 -22.68397 -22.41945 -21.87836 -21.26875 -20.42878 -19.12106 -18.51547 -18.22163 -17.57553 -17.19775 -17.07226 -16.62464 -16.50000 -16.34153 -16.00900 -15.87909 -15.63434 -15.20350 -14.82592 -14.66509 -14.38237 -14.34283 -13.93870 -13.77845 -13.70631 -13.45142 -12.97674 -12.82660 -12.59127 -12.53653 -12.53332 -12.30977 -12.14469 -12.11273 -11.96769 -11.84860 -11.78888 -11.63904 -11.58025 -11.37012 -11.02563 -10.86889 -10.57908 -9.85956 -9.68359 -9.00713 -8.37481 -6.47702 1.02704 1.17412 1.36242 1.39710 1.49285 1.65182 2.00545 2.28918 2.36171 2.81893 2.90262 2.95077 3.51395 3.58392 3.80016 3.95384 4.12554 4.15980 4.19287 4.32082 4.36608 4.40930 4.45866 4.49276 4.56207 4.58760 4.59410 4.60818 4.63877 4.79780 4.82931 4.85822 4.89506 4.91069 4.92557 4.95322 5.04511 5.11520 5.21891 5.23469 5.24748 5.32639 5.64189 5.76180 5.91526 6.02093 6.24210 6.41797 6.55440 6.61583 7.08024 7.15284 7.38608 8.79792 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.002939 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.920217 B = 9524.977898 C =10223.654022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.395 6.395 3 C 0.047 3.953 4 C 0.131 3.869 5 N -0.606 5.606 6 C 0.709 3.291 7 O -0.600 6.600 8 N -0.649 5.649 9 C 0.276 3.724 10 C -0.295 4.295 11 C 0.062 3.938 12 N -0.345 5.345 13 C 0.240 3.760 14 C -0.547 4.547 15 H 0.025 0.975 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.956 3.044 19 H -0.253 1.253 20 H -0.280 1.280 21 H -0.240 1.240 22 N -0.350 5.350 23 C 0.142 3.858 24 C -0.163 4.163 25 C -0.121 4.121 26 C -0.146 4.146 27 C -0.129 4.129 28 H 0.030 0.970 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.422 0.578 36 H 0.167 0.833 37 H 0.212 0.788 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.272 0.728 41 H 0.135 0.865 42 H 0.046 0.954 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.102 0.898 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 -2.810 21.839 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.031 4.031 4 C 0.009 3.991 5 N -0.341 5.341 6 C 0.410 3.590 7 O -0.478 6.478 8 N -0.309 5.309 9 C 0.020 3.980 10 C -0.326 4.326 11 C -0.086 4.086 12 N -0.126 5.126 13 C 0.120 3.880 14 C -0.585 4.585 15 H 0.043 0.957 16 C -0.184 4.184 17 N -0.581 5.581 18 Si 0.777 3.223 19 H -0.177 1.177 20 H -0.206 1.206 21 H -0.163 1.163 22 N -0.181 5.181 23 C 0.039 3.961 24 C -0.202 4.202 25 C -0.159 4.159 26 C -0.184 4.184 27 C -0.167 4.167 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.270 0.730 36 H 0.184 0.816 37 H 0.229 0.771 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.153 0.847 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.055 0.945 48 H 0.120 0.880 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.584 -3.227 21.006 26.354 hybrid contribution -0.022 0.566 -0.666 0.874 sum -15.606 -2.661 20.340 25.775 Atomic orbital electron populations 1.22836 0.80276 1.03553 1.00103 1.87836 1.20554 1.27597 1.95472 1.22983 0.94207 0.85166 1.00707 1.21695 0.92180 1.00764 0.84488 1.47339 1.69366 1.06629 1.10756 1.15874 0.77745 0.85083 0.80264 1.90790 1.60297 1.13011 1.83730 1.42802 1.71938 1.11164 1.05045 1.19324 0.99931 0.91506 0.87232 1.21727 1.19161 0.93281 0.98425 1.23239 0.99332 0.94461 0.91588 1.48508 1.51921 1.02840 1.09380 1.19886 0.95657 0.99659 0.72797 1.21231 1.05814 1.37483 0.93984 0.95668 1.25925 0.95621 0.94649 1.02222 1.70052 1.21138 1.42769 1.24150 0.85606 0.80221 0.79287 0.77208 1.17674 1.20557 1.16305 1.77295 1.29336 1.11668 0.99835 1.22071 0.93549 0.78183 1.02332 1.23197 0.97580 0.98399 1.01020 1.22541 0.96278 0.98605 0.98485 1.22599 0.97392 1.01133 0.97294 1.22581 0.97936 1.00325 0.95879 0.95154 0.88443 0.92850 0.89976 0.95389 0.86340 0.88655 0.73039 0.81551 0.77088 0.93729 0.89976 0.91871 0.84727 0.93575 0.87905 0.87487 0.92211 0.88825 0.94478 0.87965 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -6.40 10.26 -148.98 -1.53 -7.92 16 3 C 0.05 0.78 6.28 71.98 0.45 1.23 16 4 C 0.13 2.25 5.85 86.38 0.50 2.75 16 5 N -0.61 -14.06 2.36 -811.68 -1.92 -15.98 16 6 C 0.71 23.45 7.15 179.06 1.28 24.73 16 7 O -0.60 -22.73 13.05 -4.01 -0.05 -22.78 16 8 N -0.65 -23.75 3.92 -321.23 -1.26 -25.00 16 9 C 0.28 12.15 8.11 133.31 1.08 13.23 16 10 C -0.29 -12.15 9.61 22.11 0.21 -11.94 16 11 C 0.06 2.42 11.44 83.52 0.96 3.37 16 12 N -0.34 -16.20 3.67 -351.85 -1.29 -17.49 16 13 C 0.24 11.45 5.33 85.63 0.46 11.90 16 14 C -0.55 -32.32 9.79 25.60 0.25 -32.07 16 15 H 0.02 1.74 8.06 -2.91 -0.02 1.72 16 16 C 0.01 0.84 5.47 84.65 0.46 1.30 16 17 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 18 Si 0.96 41.32 27.47 68.60 1.88 43.21 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 22 N -0.35 -17.38 12.42 -54.43 -0.68 -18.06 16 23 C 0.14 2.61 2.96 45.71 0.14 2.75 16 24 C -0.16 -3.36 5.85 31.70 0.19 -3.17 16 25 C -0.12 -2.36 6.81 31.91 0.22 -2.14 16 26 C -0.15 -3.24 6.13 31.67 0.19 -3.04 16 27 C -0.13 -2.54 5.79 31.32 0.18 -2.36 16 28 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.90 8.14 -2.38 -0.02 0.89 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 1.29 7.89 -2.39 -0.02 1.27 16 34 H 0.10 1.82 7.36 -2.39 -0.02 1.80 16 35 H 0.42 14.04 1.88 -92.70 -0.17 13.86 16 36 H 0.17 6.67 5.93 -2.91 -0.02 6.65 16 37 H 0.21 6.05 8.06 -2.91 -0.02 6.02 16 38 H 0.04 2.08 7.20 -2.39 -0.02 2.07 16 39 H 0.08 3.36 7.50 -2.38 -0.02 3.34 16 40 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.13 1.69 7.80 -2.39 -0.02 1.67 16 42 H 0.05 1.31 5.40 -2.39 -0.01 1.30 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.04 1.12 6.42 -2.39 -0.02 1.10 16 48 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.05 1.17 7.36 -2.39 -0.02 1.15 16 Total: -1.00 -80.18 386.00 4.00 -76.18 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.73 Total: 38.20 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 7.82 Total: 8.13 kcal Atomic # 7 Polarization: -130.19 SS G_CDS: -4.84 Total: -135.03 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.58 Total: -30.70 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.21 kcal Total: -80.18 4.00 -76.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610559362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.004 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds