Wall clock time and date at job start Tue Mar 31 2020 19:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47112 * 2 1 4 4 N 1.30827 * 125.96289 * 265.30002 * 3 2 1 5 5 C 1.33236 * 109.83170 * 180.12494 * 4 3 2 6 6 C 1.50703 * 125.53213 * 179.85480 * 5 4 3 7 7 H 1.09001 * 109.46750 * 14.72037 * 6 5 4 8 8 C 1.52994 * 109.47379 * 254.72356 * 6 5 4 9 9 N 1.46495 * 109.47136 * 134.71785 * 6 5 4 10 10 C 1.34784 * 119.99903 * 205.00331 * 9 6 5 11 11 O 1.21584 * 119.99859 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00086 * 180.02562 * 10 9 6 13 13 C 1.46500 * 120.00173 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.45804 * 275.02930 * 13 12 10 15 15 C 1.53194 * 109.31252 * 178.60304 * 14 13 12 16 16 N 1.46925 * 108.76644 * 54.64903 * 15 14 13 17 17 C 1.36942 * 120.62630 * 126.36651 * 16 15 14 18 18 H 1.07997 * 119.99830 * 331.86004 * 17 16 15 19 19 C 1.38808 * 119.99646 * 151.86794 * 17 16 15 20 20 N 1.31620 * 119.99998 * 343.05730 * 19 17 16 21 21 Si 1.86802 * 119.99706 * 163.06579 * 19 17 16 22 22 H 1.48502 * 109.47068 * 89.99596 * 21 19 17 23 23 H 1.48501 * 109.47063 * 209.99014 * 21 19 17 24 24 H 1.48490 * 109.47331 * 329.99303 * 21 19 17 25 25 C 1.46922 * 118.74230 * 306.38946 * 16 15 14 26 26 C 1.53041 * 109.46063 * 154.97172 * 13 12 10 27 27 N 1.30712 * 108.94801 * 359.59359 * 5 4 3 28 28 N 1.34430 * 125.96164 * 84.97704 * 3 2 1 29 29 H 0.97005 * 126.82009 * 359.97438 * 28 3 2 30 30 H 1.09006 * 109.46525 * 60.00176 * 1 2 3 31 31 H 1.08997 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46997 * 300.00017 * 1 2 3 33 33 H 1.08996 * 109.46997 * 239.99983 * 2 1 3 34 34 H 1.08997 * 109.46610 * 120.00081 * 2 1 3 35 35 H 1.08997 * 109.47462 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.46919 * 299.99577 * 8 6 5 37 37 H 1.08998 * 109.47635 * 59.99655 * 8 6 5 38 38 H 0.97001 * 120.00098 * 25.00320 * 9 6 5 39 39 H 0.97001 * 119.99914 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.45573 * 35.00173 * 13 12 10 41 41 H 1.09003 * 109.49854 * 298.56184 * 14 13 12 42 42 H 1.08996 * 109.50226 * 58.66239 * 14 13 12 43 43 H 1.09010 * 109.59211 * 294.86795 * 15 14 13 44 44 H 1.08993 * 109.70339 * 174.50875 * 15 14 13 45 45 H 0.97002 * 119.99386 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58858 * 293.81925 * 25 16 15 47 47 H 1.09002 * 109.70547 * 173.46258 * 25 16 15 48 48 H 1.09000 * 109.49928 * 301.34195 * 26 13 12 49 49 H 1.09006 * 109.49532 * 61.43862 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3703 2.1162 -1.0554 5 6 2.7709 3.3321 -0.6862 6 6 3.2409 4.4198 -1.6175 7 1 2.9632 4.1669 -2.6408 8 6 4.7619 4.5527 -1.5200 9 7 2.6145 5.6894 -1.2411 10 6 2.4589 6.6628 -2.1603 11 8 2.8380 6.4868 -3.3021 12 7 1.8831 7.8310 -1.8139 13 6 1.7134 8.8888 -2.8132 14 6 2.9978 9.7161 -2.9030 15 6 2.8292 10.7991 -3.9733 16 7 1.6260 11.5843 -3.6658 17 6 1.6904 12.9484 -3.5639 18 1 2.6101 13.4241 -3.2570 19 6 0.5735 13.7195 -3.8550 20 7 -0.4257 13.1998 -4.5360 21 14 0.4888 15.4949 -3.2802 22 1 1.0650 16.3809 -4.3234 23 1 -0.9277 15.8701 -3.0393 24 1 1.2616 15.6450 -2.0212 25 6 0.3527 10.8782 -3.4692 26 6 0.5491 9.7942 -2.4047 27 7 2.6849 3.4307 0.6144 28 7 2.2057 2.1968 1.0839 29 1 2.0332 1.9533 2.0069 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.1019 5.3390 -2.1939 36 1 5.0396 4.8056 -0.4967 37 1 5.2280 3.6081 -1.8001 38 1 2.3117 5.8296 -0.3303 39 1 1.5803 7.9713 -0.9031 40 1 1.5016 8.4406 -3.7839 41 1 3.1967 10.1849 -1.9392 42 1 3.8310 9.0666 -3.1710 43 1 2.7202 10.3318 -4.9521 44 1 3.7014 11.4526 -3.9755 45 1 -1.2060 13.7389 -4.7397 46 1 0.0417 10.4174 -4.4068 47 1 -0.4105 11.5821 -3.1373 48 1 -0.3606 9.2001 -2.3180 49 1 0.7714 10.2622 -1.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611196702.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:52 Heat of formation + Delta-G solvation = 66.683172 kcal Electronic energy + Delta-G solvation = -28860.875950 eV Core-core repulsion = 24860.013750 eV Total energy + Delta-G solvation = -4000.862200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.64858 -39.96236 -37.60098 -35.99207 -34.48155 -34.23175 -32.93333 -32.14512 -30.90874 -30.07969 -29.77636 -28.93729 -25.15451 -24.96060 -24.41863 -22.31153 -22.03387 -21.29998 -20.63941 -20.34511 -19.38578 -18.55841 -17.81726 -16.82238 -16.35453 -16.16411 -15.26591 -15.11974 -14.97278 -14.73626 -14.47363 -14.41099 -13.85794 -13.55423 -13.52547 -13.43394 -13.01727 -12.84432 -12.77380 -12.50439 -12.32492 -12.19071 -12.14874 -11.71581 -11.58443 -11.39553 -11.07577 -10.79779 -10.67256 -10.54357 -10.46470 -10.43240 -10.21955 -10.03816 -9.98671 -9.90577 -9.69634 -9.48452 -9.19744 -8.55654 -8.39292 -6.63399 -5.75781 -3.17450 1.11313 2.14040 2.31027 2.84621 3.38230 3.39745 3.46580 3.49017 3.51350 4.05961 4.20962 4.40293 4.52890 4.54876 4.65268 4.87855 5.05171 5.14432 5.19174 5.33366 5.38950 5.45472 5.50227 5.56736 5.57677 5.67821 5.73118 5.78190 5.90040 5.97076 6.09988 6.15098 6.35891 6.41439 6.42790 6.55313 6.58358 6.64597 6.68128 6.86838 6.96817 7.05446 7.17608 7.37278 7.65293 7.66926 7.83047 8.19853 8.48801 8.80475 9.24906 9.88414 10.45712 11.33210 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.001933 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.383046 B =14480.679273 C =14909.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.288 3.712 4 N -0.527 5.527 5 C 0.228 3.772 6 C 0.259 3.741 7 H 0.116 0.884 8 C -0.157 4.157 9 N -0.745 5.745 10 C 0.706 3.294 11 O -0.587 6.587 12 N -0.738 5.738 13 C 0.169 3.831 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.175 3.825 26 C -0.146 4.146 27 N -0.306 5.306 28 N -0.481 5.481 29 H 0.440 0.560 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.391 0.609 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 -27.546 14.068 31.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 C 0.009 3.991 4 N -0.256 5.256 5 C -0.056 4.056 6 C 0.151 3.849 7 H 0.134 0.866 8 C -0.216 4.216 9 N -0.402 5.402 10 C 0.406 3.594 11 O -0.465 6.465 12 N -0.391 5.391 13 C 0.065 3.935 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.048 3.952 26 C -0.186 4.186 27 N -0.135 5.135 28 N -0.198 5.198 29 H 0.286 0.714 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.224 0.776 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.966 -27.027 12.929 30.222 hybrid contribution -0.585 0.660 1.974 2.162 sum 3.381 -26.367 14.903 30.476 Atomic orbital electron populations 1.21771 0.92970 1.03131 1.02986 1.20225 0.97055 0.86102 1.05314 1.24454 0.95594 0.96275 0.82785 1.70362 1.21313 1.04552 1.29367 1.24300 0.97371 0.93794 0.90125 1.18796 0.92614 0.77472 0.96055 0.86604 1.22175 0.93304 1.03146 1.02996 1.45121 1.67050 1.14809 1.13247 1.15914 0.78832 0.80196 0.84443 1.90925 1.56036 1.80958 1.18550 1.45539 1.64628 1.14522 1.14401 1.20919 0.95928 0.85435 0.91169 1.22392 0.96651 0.97943 1.00983 1.20882 0.90969 0.92001 0.94096 1.44093 1.03573 1.02600 1.81293 1.19180 0.98393 0.81593 1.38823 0.91700 1.25052 0.98510 0.97783 0.98422 1.70029 1.08587 1.36299 1.39879 0.86311 0.76827 0.85038 0.78673 1.21409 1.21621 1.20550 1.20735 0.89620 0.91551 0.93280 1.22548 0.95807 0.98181 1.02104 1.77949 1.22225 1.01033 1.12305 1.47978 1.51399 1.09978 1.10483 0.71401 0.91449 0.90802 0.92544 0.87608 0.89252 0.90300 0.92092 0.91415 0.76828 0.77626 0.89993 0.92487 0.92611 0.96131 0.92623 0.93650 0.96078 0.89077 0.92813 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.90 37.16 0.37 -0.14 16 2 C -0.05 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.29 2.22 7.49 -155.70 -1.17 1.06 16 4 N -0.53 -5.91 11.19 -8.16 -0.09 -6.01 16 5 C 0.23 2.63 6.95 -156.86 -1.09 1.54 16 6 C 0.26 3.14 3.12 -69.09 -0.22 2.93 16 7 H 0.12 1.60 7.58 -51.93 -0.39 1.21 16 8 C -0.16 -1.70 9.47 37.15 0.35 -1.35 16 9 N -0.75 -9.27 5.07 -59.82 -0.30 -9.58 16 10 C 0.71 11.13 8.50 -86.91 -0.74 10.39 16 11 O -0.59 -11.45 15.67 5.29 0.08 -11.37 16 12 N -0.74 -11.02 5.08 -58.63 -0.30 -11.32 16 13 C 0.17 3.06 2.42 -67.89 -0.16 2.90 16 14 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 15 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 16 N -0.59 -15.04 2.99 -172.32 -0.52 -15.56 16 17 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 20 N -0.90 -26.33 11.19 55.49 0.62 -25.71 16 21 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 26 C -0.15 -2.75 5.55 -26.61 -0.15 -2.90 16 27 N -0.31 -3.20 12.46 32.42 0.40 -2.80 16 28 N -0.48 -3.45 7.45 32.62 0.24 -3.21 16 29 H 0.44 1.54 8.96 -182.33 -1.63 -0.09 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 4.28 8.34 -40.82 -0.34 3.94 16 39 H 0.39 4.79 8.62 -40.82 -0.35 4.44 16 40 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -34.69 399.16 -11.59 -46.28 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -9.31 Total: 5.00 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -3.41 Total: 11.53 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: 0.06 Total: -74.18 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.69 -11.59 -46.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611196702.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.959 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds