Wall clock time and date at job start Tue Mar 31 2020 19:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47112 * 2 1 4 4 N 1.30827 * 125.96289 * 265.30002 * 3 2 1 5 5 C 1.33236 * 109.83170 * 180.12494 * 4 3 2 6 6 C 1.50703 * 125.53213 * 179.85480 * 5 4 3 7 7 H 1.09001 * 109.46750 * 14.72037 * 6 5 4 8 8 C 1.52994 * 109.47379 * 254.72356 * 6 5 4 9 9 N 1.46495 * 109.47136 * 134.71785 * 6 5 4 10 10 C 1.34784 * 119.99903 * 205.00331 * 9 6 5 11 11 O 1.21584 * 119.99859 * 0.02562 * 10 9 6 12 12 N 1.34777 * 120.00086 * 180.02562 * 10 9 6 13 13 C 1.46500 * 120.00173 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.45804 * 275.02930 * 13 12 10 15 15 C 1.53194 * 109.31252 * 178.60304 * 14 13 12 16 16 N 1.46925 * 108.76644 * 54.64903 * 15 14 13 17 17 C 1.36942 * 120.62630 * 126.36651 * 16 15 14 18 18 H 1.07997 * 119.99830 * 331.86004 * 17 16 15 19 19 C 1.38808 * 119.99646 * 151.86794 * 17 16 15 20 20 N 1.31620 * 119.99998 * 343.05730 * 19 17 16 21 21 Si 1.86802 * 119.99706 * 163.06579 * 19 17 16 22 22 H 1.48502 * 109.47068 * 89.99596 * 21 19 17 23 23 H 1.48501 * 109.47063 * 209.99014 * 21 19 17 24 24 H 1.48490 * 109.47331 * 329.99303 * 21 19 17 25 25 C 1.46922 * 118.74230 * 306.38946 * 16 15 14 26 26 C 1.53041 * 109.46063 * 154.97172 * 13 12 10 27 27 N 1.30712 * 108.94801 * 359.59359 * 5 4 3 28 28 N 1.34430 * 125.96164 * 84.97704 * 3 2 1 29 29 H 0.97005 * 126.82009 * 359.97438 * 28 3 2 30 30 H 1.09006 * 109.46525 * 60.00176 * 1 2 3 31 31 H 1.08997 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46997 * 300.00017 * 1 2 3 33 33 H 1.08996 * 109.46997 * 239.99983 * 2 1 3 34 34 H 1.08997 * 109.46610 * 120.00081 * 2 1 3 35 35 H 1.08997 * 109.47462 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.46919 * 299.99577 * 8 6 5 37 37 H 1.08998 * 109.47635 * 59.99655 * 8 6 5 38 38 H 0.97001 * 120.00098 * 25.00320 * 9 6 5 39 39 H 0.97001 * 119.99914 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.45573 * 35.00173 * 13 12 10 41 41 H 1.09003 * 109.49854 * 298.56184 * 14 13 12 42 42 H 1.08996 * 109.50226 * 58.66239 * 14 13 12 43 43 H 1.09010 * 109.59211 * 294.86795 * 15 14 13 44 44 H 1.08993 * 109.70339 * 174.50875 * 15 14 13 45 45 H 0.97002 * 119.99386 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58858 * 293.81925 * 25 16 15 47 47 H 1.09002 * 109.70547 * 173.46258 * 25 16 15 48 48 H 1.09000 * 109.49928 * 301.34195 * 26 13 12 49 49 H 1.09006 * 109.49532 * 61.43862 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3703 2.1162 -1.0554 5 6 2.7709 3.3321 -0.6862 6 6 3.2409 4.4198 -1.6175 7 1 2.9632 4.1669 -2.6408 8 6 4.7619 4.5527 -1.5200 9 7 2.6145 5.6894 -1.2411 10 6 2.4589 6.6628 -2.1603 11 8 2.8380 6.4868 -3.3021 12 7 1.8831 7.8310 -1.8139 13 6 1.7134 8.8888 -2.8132 14 6 2.9978 9.7161 -2.9030 15 6 2.8292 10.7991 -3.9733 16 7 1.6260 11.5843 -3.6658 17 6 1.6904 12.9484 -3.5639 18 1 2.6101 13.4241 -3.2570 19 6 0.5735 13.7195 -3.8550 20 7 -0.4257 13.1998 -4.5360 21 14 0.4888 15.4949 -3.2802 22 1 1.0650 16.3809 -4.3234 23 1 -0.9277 15.8701 -3.0393 24 1 1.2616 15.6450 -2.0212 25 6 0.3527 10.8782 -3.4692 26 6 0.5491 9.7942 -2.4047 27 7 2.6849 3.4307 0.6144 28 7 2.2057 2.1968 1.0839 29 1 2.0332 1.9533 2.0069 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.1019 5.3390 -2.1939 36 1 5.0396 4.8056 -0.4967 37 1 5.2280 3.6081 -1.8001 38 1 2.3117 5.8296 -0.3303 39 1 1.5803 7.9713 -0.9031 40 1 1.5016 8.4406 -3.7839 41 1 3.1967 10.1849 -1.9392 42 1 3.8310 9.0666 -3.1710 43 1 2.7202 10.3318 -4.9521 44 1 3.7014 11.4526 -3.9755 45 1 -1.2060 13.7389 -4.7397 46 1 0.0417 10.4174 -4.4068 47 1 -0.4105 11.5821 -3.1373 48 1 -0.3606 9.2001 -2.3180 49 1 0.7714 10.2622 -1.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611196702.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:51 Heat of formation + Delta-G solvation = 42.093410 kcal Electronic energy + Delta-G solvation = -28861.942242 eV Core-core repulsion = 24860.013750 eV Total energy + Delta-G solvation = -4001.928492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.34694 -41.25510 -39.20253 -37.09541 -35.89401 -34.96197 -34.05476 -33.54250 -32.16395 -31.57966 -30.86455 -30.32335 -26.91752 -25.60959 -25.26960 -23.97059 -23.66792 -22.16108 -21.62174 -21.38691 -21.00310 -19.65313 -18.84350 -18.49606 -17.62607 -16.86001 -16.84706 -16.28082 -16.14866 -15.84687 -15.55248 -15.37069 -15.30939 -15.01780 -14.81646 -14.65402 -14.47589 -14.09469 -14.00640 -13.51509 -13.25956 -13.20068 -13.07882 -12.98812 -12.60264 -12.54508 -12.49830 -12.47361 -12.21896 -12.00909 -11.99559 -11.84957 -11.55669 -11.40468 -11.27113 -11.20911 -11.17719 -10.65828 -10.54702 -10.38810 -9.82052 -8.69084 -7.86521 -5.31913 0.43616 1.41317 1.49199 1.49963 1.58688 1.60249 1.84156 2.15045 2.53120 2.78784 3.19403 3.30761 3.49043 3.68456 3.71621 3.91901 4.08115 4.13000 4.14288 4.28009 4.35883 4.36943 4.48451 4.58106 4.67644 4.68682 4.79572 4.83072 4.88301 4.95508 5.02702 5.04100 5.07242 5.09755 5.14542 5.17803 5.22757 5.32086 5.33593 5.38536 5.48476 5.60200 5.66032 5.71064 5.97051 6.12256 6.40464 6.95401 7.07085 7.15780 7.56786 7.85457 8.38708 9.20757 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.001933 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.383046 B =14480.679273 C =14909.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.294 3.706 4 N -0.565 5.565 5 C 0.216 3.784 6 C 0.260 3.740 7 H 0.094 0.906 8 C -0.147 4.147 9 N -0.728 5.728 10 C 0.707 3.293 11 O -0.626 6.626 12 N -0.725 5.725 13 C 0.182 3.818 14 C -0.123 4.123 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.179 3.821 26 C -0.128 4.128 27 N -0.319 5.319 28 N -0.467 5.467 29 H 0.457 0.543 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.409 0.591 39 H 0.408 0.592 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.007 0.993 44 H 0.058 0.942 45 H 0.251 0.749 46 H -0.005 1.005 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -29.089 16.939 33.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C 0.016 3.984 4 N -0.294 5.294 5 C -0.068 4.068 6 C 0.151 3.849 7 H 0.112 0.888 8 C -0.206 4.206 9 N -0.385 5.385 10 C 0.407 3.593 11 O -0.507 6.507 12 N -0.379 5.379 13 C 0.076 3.924 14 C -0.164 4.164 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.194 1.194 25 C 0.053 3.947 26 C -0.168 4.168 27 N -0.149 5.149 28 N -0.187 5.187 29 H 0.307 0.693 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.245 0.755 39 H 0.244 0.756 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.025 0.975 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.013 0.987 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.331 -28.616 15.891 33.018 hybrid contribution -0.695 1.016 1.073 1.633 sum 3.636 -27.600 16.964 32.600 Atomic orbital electron populations 1.21759 0.92696 1.04138 1.01983 1.20460 0.97043 0.83742 1.07099 1.25141 0.93956 0.97301 0.81980 1.70329 1.22824 1.04944 1.31335 1.24038 0.98455 0.93915 0.90366 1.18717 0.93340 0.77460 0.95345 0.88805 1.22071 0.92367 1.03181 1.03008 1.44920 1.66221 1.14195 1.13128 1.15976 0.78521 0.80610 0.84230 1.90908 1.57636 1.81687 1.20434 1.45136 1.64572 1.13627 1.14610 1.20517 0.95186 0.85736 0.90919 1.22185 0.97189 0.96936 1.00053 1.20971 0.89948 0.92594 0.94633 1.44344 1.04712 1.02482 1.81673 1.19513 0.98560 0.82860 1.38316 0.91476 1.25829 0.98294 1.01791 0.98733 1.70190 1.09067 1.37717 1.41206 0.85254 0.76568 0.80097 0.78367 1.21340 1.21800 1.19387 1.20558 0.88585 0.92033 0.93562 1.22263 0.97134 0.96899 1.00464 1.77842 1.22622 1.02714 1.11715 1.47911 1.50452 1.08887 1.11419 0.69336 0.93859 0.88809 0.92115 0.87481 0.85790 0.91812 0.91308 0.90356 0.75500 0.75566 0.92458 0.91588 0.92150 0.97453 0.92347 0.94036 0.98728 0.91794 0.90683 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.90 71.98 0.71 0.03 16 2 C -0.04 -0.20 6.56 29.85 0.20 -0.01 16 3 C 0.29 4.00 7.49 138.23 1.04 5.04 16 4 N -0.56 -12.24 11.19 -179.73 -2.01 -14.25 16 5 C 0.22 4.81 6.95 138.63 0.96 5.77 16 6 C 0.26 6.24 3.12 44.24 0.14 6.38 16 7 H 0.09 2.68 7.58 -2.39 -0.02 2.67 16 8 C -0.15 -3.11 9.47 71.98 0.68 -2.43 16 9 N -0.73 -17.44 5.07 -461.42 -2.34 -19.78 16 10 C 0.71 21.78 8.50 179.05 1.52 23.30 16 11 O -0.63 -24.65 15.67 -3.98 -0.06 -24.71 16 12 N -0.73 -20.54 5.08 -457.68 -2.33 -22.87 16 13 C 0.18 6.45 2.42 45.02 0.11 6.56 16 14 C -0.12 -4.57 5.65 30.67 0.17 -4.40 16 15 C 0.14 6.44 6.52 86.36 0.56 7.00 16 16 N -0.61 -31.29 2.99 -699.10 -2.09 -33.38 16 17 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 18 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 19 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 20 N -0.94 -55.79 11.19 21.65 0.24 -55.55 16 21 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C 0.18 8.72 5.30 86.36 0.46 9.18 16 26 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16 27 N -0.32 -6.14 12.46 -51.33 -0.64 -6.78 16 28 N -0.47 -5.64 7.45 -50.71 -0.38 -6.02 16 29 H 0.46 1.89 8.96 -213.09 -1.91 -0.02 16 30 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.12 -0.25 8.14 -2.39 -0.02 -0.26 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 8.09 8.34 -92.71 -0.77 7.31 16 39 H 0.41 8.93 8.62 -92.71 -0.80 8.13 16 40 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 47 H 0.06 3.46 6.06 -2.39 -0.01 3.45 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -76.75 399.16 -2.13 -78.88 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -2.50 Total: 21.81 kcal Atomic # 6 Polarization: 27.72 SS G_CDS: 7.94 Total: 35.66 kcal Atomic # 7 Polarization: -149.08 SS G_CDS: -9.54 Total: -158.63 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.75 -2.13 -78.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611196702.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.974 kcal (2) G-P(sol) polarization free energy of solvation -76.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds