Wall clock time and date at job start Tue Mar 31 2020 19:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46883 * 2 1 4 4 N 1.30832 * 125.96168 * 265.00021 * 3 2 1 5 5 C 1.33235 * 109.83084 * 179.97438 * 4 3 2 6 6 C 1.50698 * 125.52930 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47358 * 345.00311 * 6 5 4 8 8 C 1.53007 * 109.46856 * 104.99882 * 6 5 4 9 9 N 1.46497 * 109.47349 * 224.99665 * 6 5 4 10 10 C 1.34775 * 120.00216 * 154.99840 * 9 6 5 11 11 O 1.21595 * 119.99657 * 0.02562 * 10 9 6 12 12 N 1.34773 * 120.00505 * 180.02562 * 10 9 6 13 13 C 1.46502 * 120.00464 * 180.02562 * 12 10 9 14 14 C 1.53038 * 109.45873 * 275.03055 * 13 12 10 15 15 C 1.53197 * 109.31121 * 178.59772 * 14 13 12 16 16 N 1.46921 * 108.76418 * 54.65649 * 15 14 13 17 17 C 1.36932 * 120.63347 * 126.36030 * 16 15 14 18 18 H 1.08000 * 120.00239 * 331.86869 * 17 16 15 19 19 C 1.38813 * 120.00238 * 151.86294 * 17 16 15 20 20 N 1.31624 * 119.99900 * 343.06338 * 19 17 16 21 21 Si 1.86800 * 120.00465 * 163.06663 * 19 17 16 22 22 H 1.48508 * 109.46645 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47265 * 119.99629 * 21 19 17 24 24 H 1.48498 * 109.47196 * 240.00390 * 21 19 17 25 25 C 1.46934 * 118.73858 * 306.38314 * 16 15 14 26 26 C 1.53038 * 109.46013 * 154.97576 * 13 12 10 27 27 N 1.30719 * 108.94532 * 0.26227 * 5 4 3 28 28 N 1.34426 * 125.95853 * 84.97522 * 3 2 1 29 29 H 0.96995 * 126.82699 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.46818 * 60.00395 * 1 2 3 31 31 H 1.08998 * 109.46576 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47114 * 299.99834 * 1 2 3 33 33 H 1.08996 * 109.47114 * 240.00166 * 2 1 3 34 34 H 1.09002 * 109.47456 * 119.99967 * 2 1 3 35 35 H 1.08993 * 109.47250 * 299.99816 * 8 6 5 36 36 H 1.09005 * 109.47252 * 60.00543 * 8 6 5 37 37 H 1.09003 * 109.46652 * 180.02562 * 8 6 5 38 38 H 0.97003 * 120.00216 * 335.00676 * 9 6 5 39 39 H 0.97003 * 119.99927 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.45581 * 35.00193 * 13 12 10 41 41 H 1.08996 * 109.49889 * 298.56292 * 14 13 12 42 42 H 1.09001 * 109.50027 * 58.65988 * 14 13 12 43 43 H 1.08996 * 109.60099 * 294.86775 * 15 14 13 44 44 H 1.09001 * 109.69952 * 174.50612 * 15 14 13 45 45 H 0.96996 * 120.00112 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.58499 * 293.82231 * 25 16 15 47 47 H 1.09004 * 109.70151 * 173.46608 * 25 16 15 48 48 H 1.09000 * 109.49352 * 301.33451 * 26 13 12 49 49 H 1.08993 * 109.50156 * 61.40538 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7710 3.3322 -0.6862 6 6 3.2421 4.4193 -1.6175 7 1 3.4649 3.9898 -2.5942 8 6 2.1456 5.4764 -1.7633 9 7 4.4504 5.0413 -1.0704 10 6 5.3267 5.6503 -1.8936 11 8 5.1142 5.6838 -3.0903 12 7 6.4386 6.2221 -1.3904 13 6 7.3909 6.8845 -2.2851 14 6 8.3596 5.8469 -2.8571 15 6 9.3315 6.5374 -3.8191 16 7 9.9850 7.6484 -3.1140 17 6 11.3505 7.7441 -3.0764 18 1 11.9562 6.8520 -3.1377 19 6 11.9562 8.9876 -2.9597 20 7 11.2697 10.0808 -3.2168 21 14 13.7457 9.1097 -2.4378 22 1 14.2886 7.7465 -2.2090 23 1 14.5281 9.7817 -3.5060 24 1 13.8426 9.8976 -1.1828 25 6 9.1455 8.6547 -2.4495 26 6 8.1755 7.9404 -1.5031 27 7 2.6901 3.4289 0.6149 28 7 2.2055 2.1969 1.0839 29 1 2.0337 1.9532 2.0069 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.2467 5.0137 -2.1703 36 1 1.9229 5.9061 -0.7866 37 1 2.4863 6.2625 -2.4372 38 1 4.6199 5.0148 -0.1156 39 1 6.6084 6.1950 -0.4357 40 1 6.8496 7.3642 -3.1005 41 1 8.9191 5.3845 -2.0441 42 1 7.7983 5.0822 -3.3941 43 1 8.7834 6.9223 -4.6790 44 1 10.0845 5.8245 -4.1551 45 1 11.6931 10.9497 -3.1356 46 1 8.5822 9.2123 -3.1977 47 1 9.7740 9.3395 -1.8800 48 1 7.4831 8.6660 -1.0764 49 1 8.7364 7.4581 -0.7026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611196703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:57 Heat of formation + Delta-G solvation = 66.576671 kcal Electronic energy + Delta-G solvation = -28832.926881 eV Core-core repulsion = 24832.060063 eV Total energy + Delta-G solvation = -4000.866818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.64663 -39.96209 -37.60244 -35.99257 -34.48703 -34.23240 -32.93348 -32.14487 -30.91387 -30.08348 -29.77044 -28.94284 -25.15535 -24.96773 -24.42402 -22.31502 -22.03073 -21.29881 -20.64268 -20.33954 -19.39366 -18.56056 -17.82534 -16.83448 -16.41749 -15.95382 -15.41741 -15.16734 -14.89400 -14.76510 -14.58281 -14.36680 -13.81476 -13.61017 -13.49049 -13.24201 -13.11116 -12.91275 -12.79468 -12.50210 -12.33423 -12.20072 -12.15102 -11.71568 -11.59280 -11.39251 -11.08102 -10.79786 -10.69987 -10.54228 -10.45258 -10.42698 -10.20627 -10.02784 -9.97882 -9.91001 -9.69456 -9.48052 -9.19816 -8.56079 -8.39687 -6.63726 -5.75866 -3.17661 1.11454 2.14256 2.31148 2.84216 3.38714 3.39260 3.47058 3.49443 3.50973 4.06013 4.20672 4.40118 4.52737 4.53773 4.64359 4.87489 5.04599 5.13445 5.18234 5.32585 5.38756 5.45294 5.49711 5.54376 5.56822 5.68048 5.72677 5.77920 5.89931 5.97049 6.09326 6.15091 6.35764 6.41335 6.42835 6.55377 6.58507 6.64707 6.68192 6.86899 6.96849 7.05415 7.17568 7.37351 7.65393 7.66992 7.83393 8.19844 8.48629 8.80445 9.24815 9.88224 10.45552 11.33080 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.001899 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.845215 B =14737.626586 C =15010.415977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C 0.288 3.712 4 N -0.527 5.527 5 C 0.228 3.772 6 C 0.259 3.741 7 H 0.116 0.884 8 C -0.157 4.157 9 N -0.745 5.745 10 C 0.706 3.294 11 O -0.587 6.587 12 N -0.738 5.738 13 C 0.169 3.831 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.250 4.250 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.175 3.825 26 C -0.146 4.146 27 N -0.306 5.306 28 N -0.480 5.480 29 H 0.440 0.560 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.391 0.609 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.056 -18.188 11.577 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.088 4.088 3 C 0.009 3.991 4 N -0.256 5.256 5 C -0.056 4.056 6 C 0.151 3.849 7 H 0.134 0.866 8 C -0.216 4.216 9 N -0.402 5.402 10 C 0.406 3.594 11 O -0.465 6.465 12 N -0.391 5.391 13 C 0.065 3.935 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.048 3.952 26 C -0.186 4.186 27 N -0.135 5.135 28 N -0.198 5.198 29 H 0.286 0.714 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.224 0.776 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.946 -17.418 10.445 30.643 hybrid contribution 0.860 -0.261 2.026 2.216 sum -22.086 -17.679 12.471 30.917 Atomic orbital electron populations 1.21763 0.93014 1.03114 1.02868 1.20231 0.96997 0.86130 1.05413 1.24450 0.95593 0.96239 0.82806 1.70362 1.21622 1.04120 1.29477 1.24295 0.97705 0.93418 0.90159 1.18797 0.84371 0.87596 0.94179 0.86599 1.22178 0.97612 0.98948 1.02875 1.45116 1.23255 1.61499 1.10344 1.15914 0.79774 0.78506 0.85201 1.90928 1.77490 1.64729 1.13334 1.45536 1.22331 1.60293 1.10916 1.20918 0.87900 0.92590 0.92046 1.22395 0.97558 0.97911 1.00145 1.20880 0.93810 0.90726 0.92517 1.44099 1.02410 1.26184 1.58876 1.19235 0.81687 0.91904 1.45107 0.91639 1.25052 0.97711 0.95937 1.01061 1.70037 1.36183 0.97187 1.51377 0.86234 0.85031 0.77580 0.78007 1.20301 1.21745 1.21632 1.20739 0.90893 0.90603 0.92960 1.22544 0.98662 0.97381 1.00034 1.77946 1.22121 1.01133 1.12340 1.47972 1.51247 1.10138 1.10474 0.71403 0.91501 0.90821 0.92577 0.87575 0.89221 0.91419 0.92098 0.90314 0.76821 0.77623 0.89955 0.92534 0.92634 0.96104 0.92631 0.93695 0.96054 0.89079 0.92757 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.89 37.16 0.37 -0.06 16 2 C -0.05 -0.18 6.56 -27.88 -0.18 -0.36 16 3 C 0.29 2.24 7.49 -155.69 -1.17 1.07 16 4 N -0.53 -5.93 11.19 -8.16 -0.09 -6.02 16 5 C 0.23 2.64 6.95 -156.85 -1.09 1.55 16 6 C 0.26 3.14 3.12 -69.08 -0.22 2.93 16 7 H 0.12 1.60 7.58 -51.93 -0.39 1.21 16 8 C -0.16 -1.69 9.47 37.16 0.35 -1.33 16 9 N -0.74 -9.28 5.07 -59.81 -0.30 -9.58 16 10 C 0.71 11.13 8.50 -86.92 -0.74 10.39 16 11 O -0.59 -11.46 15.67 5.28 0.08 -11.37 16 12 N -0.74 -11.01 5.08 -58.64 -0.30 -11.31 16 13 C 0.17 3.06 2.42 -67.89 -0.16 2.90 16 14 C -0.14 -2.67 5.65 -26.61 -0.15 -2.82 16 15 C 0.15 3.27 6.52 -3.71 -0.02 3.24 16 16 N -0.59 -15.05 2.99 -172.32 -0.52 -15.57 16 17 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 18 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 19 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 20 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 21 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.17 4.16 5.30 -3.71 -0.02 4.14 16 26 C -0.15 -2.74 5.55 -26.61 -0.15 -2.89 16 27 N -0.31 -3.21 12.45 32.42 0.40 -2.81 16 28 N -0.48 -3.47 7.45 32.62 0.24 -3.22 16 29 H 0.44 1.56 8.96 -182.34 -1.63 -0.08 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.40 4.28 8.33 -40.82 -0.34 3.94 16 39 H 0.39 4.79 8.62 -40.82 -0.35 4.44 16 40 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -34.71 399.15 -11.59 -46.30 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -9.31 Total: 4.89 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -3.41 Total: 11.63 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: 0.06 Total: -74.20 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.71 -11.59 -46.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611196703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.877 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds