Wall clock time and date at job start Tue Mar 31 2020 19:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46883 * 2 1 4 4 N 1.30832 * 125.96168 * 265.00021 * 3 2 1 5 5 C 1.33235 * 109.83084 * 179.97438 * 4 3 2 6 6 C 1.50698 * 125.52930 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47358 * 345.00311 * 6 5 4 8 8 C 1.53007 * 109.46856 * 104.99882 * 6 5 4 9 9 N 1.46497 * 109.47349 * 224.99665 * 6 5 4 10 10 C 1.34775 * 120.00216 * 154.99840 * 9 6 5 11 11 O 1.21595 * 119.99657 * 0.02562 * 10 9 6 12 12 N 1.34773 * 120.00505 * 180.02562 * 10 9 6 13 13 C 1.46502 * 120.00464 * 180.02562 * 12 10 9 14 14 C 1.53038 * 109.45873 * 275.03055 * 13 12 10 15 15 C 1.53197 * 109.31121 * 178.59772 * 14 13 12 16 16 N 1.46921 * 108.76418 * 54.65649 * 15 14 13 17 17 C 1.36932 * 120.63347 * 126.36030 * 16 15 14 18 18 H 1.08000 * 120.00239 * 331.86869 * 17 16 15 19 19 C 1.38813 * 120.00238 * 151.86294 * 17 16 15 20 20 N 1.31624 * 119.99900 * 343.06338 * 19 17 16 21 21 Si 1.86800 * 120.00465 * 163.06663 * 19 17 16 22 22 H 1.48508 * 109.46645 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47265 * 119.99629 * 21 19 17 24 24 H 1.48498 * 109.47196 * 240.00390 * 21 19 17 25 25 C 1.46934 * 118.73858 * 306.38314 * 16 15 14 26 26 C 1.53038 * 109.46013 * 154.97576 * 13 12 10 27 27 N 1.30719 * 108.94532 * 0.26227 * 5 4 3 28 28 N 1.34426 * 125.95853 * 84.97522 * 3 2 1 29 29 H 0.96995 * 126.82699 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.46818 * 60.00395 * 1 2 3 31 31 H 1.08998 * 109.46576 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47114 * 299.99834 * 1 2 3 33 33 H 1.08996 * 109.47114 * 240.00166 * 2 1 3 34 34 H 1.09002 * 109.47456 * 119.99967 * 2 1 3 35 35 H 1.08993 * 109.47250 * 299.99816 * 8 6 5 36 36 H 1.09005 * 109.47252 * 60.00543 * 8 6 5 37 37 H 1.09003 * 109.46652 * 180.02562 * 8 6 5 38 38 H 0.97003 * 120.00216 * 335.00676 * 9 6 5 39 39 H 0.97003 * 119.99927 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.45581 * 35.00193 * 13 12 10 41 41 H 1.08996 * 109.49889 * 298.56292 * 14 13 12 42 42 H 1.09001 * 109.50027 * 58.65988 * 14 13 12 43 43 H 1.08996 * 109.60099 * 294.86775 * 15 14 13 44 44 H 1.09001 * 109.69952 * 174.50612 * 15 14 13 45 45 H 0.96996 * 120.00112 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.58499 * 293.82231 * 25 16 15 47 47 H 1.09004 * 109.70151 * 173.46608 * 25 16 15 48 48 H 1.09000 * 109.49352 * 301.33451 * 26 13 12 49 49 H 1.08993 * 109.50156 * 61.40538 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3754 2.1145 -1.0549 5 6 2.7710 3.3322 -0.6862 6 6 3.2421 4.4193 -1.6175 7 1 3.4649 3.9898 -2.5942 8 6 2.1456 5.4764 -1.7633 9 7 4.4504 5.0413 -1.0704 10 6 5.3267 5.6503 -1.8936 11 8 5.1142 5.6838 -3.0903 12 7 6.4386 6.2221 -1.3904 13 6 7.3909 6.8845 -2.2851 14 6 8.3596 5.8469 -2.8571 15 6 9.3315 6.5374 -3.8191 16 7 9.9850 7.6484 -3.1140 17 6 11.3505 7.7441 -3.0764 18 1 11.9562 6.8520 -3.1377 19 6 11.9562 8.9876 -2.9597 20 7 11.2697 10.0808 -3.2168 21 14 13.7457 9.1097 -2.4378 22 1 14.2886 7.7465 -2.2090 23 1 14.5281 9.7817 -3.5060 24 1 13.8426 9.8976 -1.1828 25 6 9.1455 8.6547 -2.4495 26 6 8.1755 7.9404 -1.5031 27 7 2.6901 3.4289 0.6149 28 7 2.2055 2.1969 1.0839 29 1 2.0337 1.9532 2.0069 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.2467 5.0137 -2.1703 36 1 1.9229 5.9061 -0.7866 37 1 2.4863 6.2625 -2.4372 38 1 4.6199 5.0148 -0.1156 39 1 6.6084 6.1950 -0.4357 40 1 6.8496 7.3642 -3.1005 41 1 8.9191 5.3845 -2.0441 42 1 7.7983 5.0822 -3.3941 43 1 8.7834 6.9223 -4.6790 44 1 10.0845 5.8245 -4.1551 45 1 11.6931 10.9497 -3.1356 46 1 8.5822 9.2123 -3.1977 47 1 9.7740 9.3395 -1.8800 48 1 7.4831 8.6660 -1.0764 49 1 8.7364 7.4581 -0.7026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611196703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:55 Heat of formation + Delta-G solvation = 42.010100 kcal Electronic energy + Delta-G solvation = -28833.992167 eV Core-core repulsion = 24832.060063 eV Total energy + Delta-G solvation = -4001.932105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.34638 -41.25383 -39.20445 -37.09566 -35.89366 -34.95800 -34.05593 -33.54332 -32.16652 -31.57748 -30.86324 -30.32661 -26.92131 -25.60016 -25.27165 -23.97995 -23.66469 -22.15187 -21.62591 -21.38027 -21.01558 -19.65100 -18.85198 -18.50074 -17.62157 -16.88671 -16.70183 -16.52491 -15.94590 -15.80818 -15.68166 -15.36307 -15.27858 -15.07603 -14.79704 -14.71483 -14.46337 -14.04414 -13.92063 -13.54587 -13.31958 -13.18850 -13.09006 -12.99713 -12.61873 -12.53647 -12.50399 -12.46828 -12.21209 -11.98480 -11.98356 -11.85497 -11.54608 -11.39917 -11.28569 -11.20452 -11.17549 -10.65529 -10.55482 -10.38825 -9.82360 -8.69423 -7.86657 -5.32176 0.43649 1.41486 1.48343 1.49879 1.58586 1.60778 1.84098 2.14959 2.52797 2.78684 3.19594 3.30511 3.49054 3.68252 3.71341 3.91991 4.07189 4.13494 4.13901 4.28774 4.36336 4.36755 4.48127 4.58208 4.67058 4.68760 4.79135 4.83195 4.88465 4.96516 5.03132 5.03970 5.07258 5.08747 5.14674 5.17892 5.22399 5.31414 5.34629 5.38480 5.48620 5.60279 5.66131 5.71564 5.97203 6.12198 6.40366 6.95349 7.07259 7.15727 7.56912 7.85186 8.38461 9.20658 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.001899 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.845215 B =14737.626586 C =15010.415977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.295 3.705 4 N -0.564 5.564 5 C 0.216 3.784 6 C 0.260 3.740 7 H 0.094 0.906 8 C -0.147 4.147 9 N -0.727 5.727 10 C 0.707 3.293 11 O -0.626 6.626 12 N -0.725 5.725 13 C 0.182 3.818 14 C -0.124 4.124 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.067 0.933 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.179 3.821 26 C -0.128 4.128 27 N -0.319 5.319 28 N -0.467 5.467 29 H 0.457 0.543 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.408 0.592 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.008 0.992 44 H 0.057 0.943 45 H 0.251 0.749 46 H -0.004 1.004 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.843 -20.280 14.108 34.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C 0.016 3.984 4 N -0.294 5.294 5 C -0.068 4.068 6 C 0.151 3.849 7 H 0.112 0.888 8 C -0.206 4.206 9 N -0.385 5.385 10 C 0.407 3.593 11 O -0.507 6.507 12 N -0.379 5.379 13 C 0.077 3.923 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.214 1.214 25 C 0.053 3.947 26 C -0.167 4.167 27 N -0.149 5.149 28 N -0.187 5.187 29 H 0.307 0.693 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.245 0.755 39 H 0.244 0.756 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.014 0.986 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.771 -19.559 13.058 33.438 hybrid contribution 1.019 0.302 1.223 1.621 sum -22.752 -19.257 14.281 33.052 Atomic orbital electron populations 1.21748 0.92294 1.04155 1.02188 1.20467 0.97397 0.83717 1.06913 1.25137 0.93967 0.97248 0.82006 1.70330 1.23175 1.04479 1.31431 1.24036 0.98766 0.93542 0.90411 1.18716 0.84338 0.88236 0.93565 0.88772 1.22076 0.97490 0.98141 1.02937 1.44914 1.22687 1.60325 1.10526 1.15976 0.80051 0.78465 0.84849 1.90911 1.78335 1.66161 1.15276 1.45134 1.21581 1.59835 1.11376 1.20519 0.87844 0.92169 0.91818 1.22191 0.96957 0.97737 0.99567 1.20959 0.94263 0.90077 0.92805 1.44348 1.02205 1.26966 1.59690 1.19549 0.82946 0.92069 1.44653 0.91544 1.25817 1.01732 0.95587 1.01409 1.70191 1.37851 0.97487 1.52603 0.85188 0.80133 0.77792 0.77190 1.19144 1.22103 1.21424 1.20568 0.90927 0.90458 0.92798 1.22260 0.97984 0.97638 0.98843 1.77842 1.22526 1.02798 1.11745 1.47905 1.50315 1.09046 1.11405 0.69344 0.93446 0.88925 0.91986 0.87704 0.86062 0.90402 0.91295 0.91835 0.75483 0.75558 0.92267 0.91732 0.92392 0.97364 0.92451 0.94022 0.98607 0.91799 0.90457 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.89 71.98 0.71 0.21 16 2 C -0.05 -0.22 6.56 29.85 0.20 -0.02 16 3 C 0.29 4.03 7.49 138.23 1.04 5.06 16 4 N -0.56 -12.25 11.19 -179.72 -2.01 -14.26 16 5 C 0.22 4.82 6.95 138.63 0.96 5.78 16 6 C 0.26 6.25 3.12 44.25 0.14 6.38 16 7 H 0.09 2.69 7.58 -2.39 -0.02 2.67 16 8 C -0.15 -3.12 9.47 71.98 0.68 -2.44 16 9 N -0.73 -17.41 5.07 -461.41 -2.34 -19.75 16 10 C 0.71 21.74 8.50 179.06 1.52 23.26 16 11 O -0.63 -24.64 15.67 -4.01 -0.06 -24.70 16 12 N -0.72 -20.49 5.08 -457.69 -2.33 -22.81 16 13 C 0.18 6.44 2.42 45.02 0.11 6.55 16 14 C -0.12 -4.65 5.65 30.67 0.17 -4.48 16 15 C 0.15 6.49 6.52 86.36 0.56 7.05 16 16 N -0.61 -31.28 2.99 -699.09 -2.09 -33.38 16 17 C -0.26 -14.58 9.58 84.03 0.81 -13.78 16 18 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 19 C -0.05 -2.81 4.92 84.86 0.42 -2.40 16 20 N -0.94 -55.64 11.19 21.65 0.24 -55.40 16 21 Si 0.97 44.98 29.59 68.60 2.03 47.01 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 25 C 0.18 8.68 5.30 86.36 0.46 9.13 16 26 C -0.13 -4.65 5.55 30.67 0.17 -4.48 16 27 N -0.32 -6.15 12.45 -51.34 -0.64 -6.79 16 28 N -0.47 -5.67 7.45 -50.70 -0.38 -6.05 16 29 H 0.46 1.92 8.96 -213.10 -1.91 0.01 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 8.06 8.33 -92.71 -0.77 7.29 16 39 H 0.41 8.90 8.62 -92.71 -0.80 8.10 16 40 H 0.06 2.42 7.58 -2.39 -0.02 2.41 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 45 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 48 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -76.57 399.15 -2.13 -78.70 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -2.50 Total: 21.60 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 7.94 Total: 35.84 kcal Atomic # 7 Polarization: -148.90 SS G_CDS: -9.54 Total: -158.44 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -76.57 -2.13 -78.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611196703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.711 kcal (2) G-P(sol) polarization free energy of solvation -76.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds