Wall clock time and date at job start Tue Mar 31 2020 21:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 5 5 C 1.34784 * 119.99971 * 84.99732 * 4 2 1 6 6 O 1.21583 * 119.99855 * 359.72712 * 5 4 2 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47233 * 300.00642 * 9 8 7 11 11 C 1.53002 * 109.47128 * 60.00327 * 9 8 7 12 12 C 1.52996 * 109.47346 * 180.02562 * 9 8 7 13 13 C 1.50699 * 109.47235 * 180.02562 * 12 9 8 14 14 H 1.07996 * 120.00370 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99790 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99822 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00076 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00205 * 17 15 13 19 19 H 1.48503 * 109.47010 * 210.00270 * 17 15 13 20 20 H 1.48500 * 109.46954 * 330.00103 * 17 15 13 21 21 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 22 22 N 1.31071 * 126.66448 * 75.02676 * 21 2 1 23 23 N 1.28830 * 107.99651 * 179.97438 * 22 21 2 24 24 N 1.28742 * 109.39748 * 359.97438 * 23 22 21 25 25 N 1.29012 * 108.80436 * 359.74700 * 24 23 22 26 26 C 1.46509 * 126.43342 * 180.24735 * 25 24 23 27 27 C 1.52992 * 117.50044 * 8.92540 * 26 25 24 28 28 C 1.53001 * 117.49883 * 300.26193 * 26 25 24 29 29 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 30 30 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 32 32 H 0.96999 * 119.99984 * 264.99579 * 4 2 1 33 33 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 35 35 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 36 36 H 1.08992 * 109.47399 * 59.99834 * 10 9 8 37 37 H 1.09001 * 109.47194 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.46724 * 299.99348 * 10 9 8 39 39 H 1.09001 * 109.47248 * 59.99447 * 11 9 8 40 40 H 1.08988 * 109.47757 * 179.97438 * 11 9 8 41 41 H 1.09002 * 109.46838 * 300.00410 * 11 9 8 42 42 H 1.09004 * 109.47108 * 300.00289 * 12 9 8 43 43 H 1.09000 * 109.46870 * 60.00183 * 12 9 8 44 44 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 45 45 H 1.09004 * 115.54676 * 154.59685 * 26 25 24 46 46 H 1.09004 * 117.49923 * 359.97438 * 27 26 25 47 47 H 1.09002 * 117.50127 * 145.02008 * 27 26 25 48 48 H 1.08993 * 117.49663 * 214.98138 * 28 26 25 49 49 H 1.09005 * 117.49702 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8530 1.1604 -2.4129 7 7 2.5966 -0.6533 -3.4575 8 6 2.7359 0.0776 -4.7196 9 6 3.2604 -0.8686 -5.8016 10 6 4.6231 -1.4212 -5.3790 11 6 2.2766 -2.0254 -5.9881 12 6 3.4066 -0.1053 -7.1195 13 6 3.9226 -1.0374 -8.1853 14 1 4.1264 -2.0707 -7.9465 15 6 4.1355 -0.5706 -9.4651 16 7 4.5853 -1.3842 -10.3953 17 14 3.7837 1.2169 -9.8780 18 1 5.0054 2.0283 -9.6454 19 1 3.3810 1.3257 -11.3032 20 1 2.6849 1.7175 -9.0135 21 6 2.0323 -0.7104 1.2304 22 7 2.0371 -2.0042 1.4399 23 7 2.5449 -2.2169 2.6047 24 7 2.8648 -1.0923 3.1435 25 7 2.5695 -0.1400 2.3248 26 6 2.7762 1.2935 2.5464 27 6 3.5886 1.7085 3.7746 28 6 2.0743 1.9311 3.7471 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.8273 -1.5944 -3.4140 34 1 1.7651 0.4709 -5.0208 35 1 3.4365 0.9020 -4.5866 36 1 4.5195 -1.9649 -4.4401 37 1 4.9970 -2.0949 -6.1500 38 1 5.3241 -0.5970 -5.2462 39 1 1.3057 -1.6318 -6.2890 40 1 2.6499 -2.6992 -6.7591 41 1 2.1729 -2.5691 -5.0490 42 1 2.4359 0.2887 -7.4207 43 1 4.1077 0.7186 -6.9863 44 1 4.7355 -1.0557 -11.2956 45 1 2.8814 1.8980 1.6455 46 1 3.9690 0.9151 4.4180 47 1 4.2280 2.5863 3.6819 48 1 1.7183 2.9552 3.6364 49 1 1.4585 1.2842 4.3720 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807172508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:52 Heat of formation + Delta-G solvation = 106.526856 kcal Electronic energy + Delta-G solvation = -29110.114225 eV Core-core repulsion = 25110.979777 eV Total energy + Delta-G solvation = -3999.134448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.65032 -40.20502 -38.50444 -37.64758 -36.12699 -34.16472 -33.76226 -32.63883 -32.01442 -30.31400 -27.80615 -26.56425 -26.27978 -25.80290 -25.11160 -23.39154 -22.90599 -22.22252 -21.47143 -20.71048 -19.10986 -18.40021 -17.76738 -17.43443 -16.98672 -16.62313 -15.86962 -15.54808 -15.42031 -14.79160 -14.26998 -14.15960 -14.01371 -13.89475 -13.75310 -13.42962 -13.28623 -12.84918 -12.73170 -12.66048 -12.46652 -12.38681 -12.36395 -12.27644 -12.03998 -11.53461 -11.39833 -11.26039 -11.13720 -11.01993 -10.90795 -10.62864 -10.50390 -10.46651 -10.27031 -9.98356 -9.76039 -9.54076 -9.52551 -9.00493 -8.76838 -8.54263 -6.04783 -4.02120 0.67598 1.30025 1.77847 2.56996 2.77110 3.10478 3.30678 3.31209 3.38874 3.42496 3.54832 3.82970 3.95944 4.03002 4.23218 4.44847 4.55564 4.64757 4.81687 4.85519 4.90852 5.12158 5.19960 5.26266 5.27659 5.28554 5.33784 5.41369 5.52117 5.62654 5.66775 5.80129 6.09473 6.10682 6.11033 6.13899 6.31347 6.46633 6.58966 6.67387 6.81418 6.92181 7.01064 7.04836 7.18917 7.35432 7.77052 7.96560 8.16832 8.51350 8.55206 8.99432 9.57710 11.07911 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022220 B = 0.002105 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.802068 B =13295.389307 C =13680.473039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.255 3.745 3 H 0.111 0.889 4 N -0.743 5.743 5 C 0.707 3.293 6 O -0.593 6.593 7 N -0.732 5.732 8 C 0.145 3.855 9 C -0.063 4.063 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.002 4.002 13 C -0.511 4.511 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.180 3.820 22 N -0.292 5.292 23 N -0.071 5.071 24 N -0.093 5.093 25 N -0.271 5.271 26 C 0.041 3.959 27 C -0.152 4.152 28 C -0.160 4.160 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.405 0.595 33 H 0.398 0.602 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.262 0.738 45 H 0.164 0.836 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 6.354 28.502 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.145 3.855 3 H 0.128 0.872 4 N -0.401 5.401 5 C 0.406 3.594 6 O -0.472 6.472 7 N -0.387 5.387 8 C 0.021 3.979 9 C -0.063 4.063 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.039 4.039 13 C -0.549 4.549 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.098 4.098 22 N -0.141 5.141 23 N -0.065 5.065 24 N -0.078 5.078 25 N -0.071 5.071 26 C -0.063 4.063 27 C -0.190 4.190 28 C -0.199 4.199 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.233 0.767 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.181 0.819 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.872 6.240 28.989 30.229 hybrid contribution 0.043 0.854 -0.733 1.127 sum -5.829 7.094 28.256 29.710 Atomic orbital electron populations 1.22223 0.92156 1.03884 1.03664 1.18907 0.94983 0.94915 0.76687 0.87151 1.45025 1.72803 1.14222 1.08037 1.15860 0.78429 0.84977 0.80085 1.90913 1.57320 1.14347 1.84589 1.45328 1.69804 1.14206 1.09319 1.21544 1.01046 0.94486 0.80803 1.20704 0.95150 0.95400 0.95084 1.21777 0.96411 1.00891 0.99534 1.21772 0.98633 0.98080 1.00116 1.19589 0.96804 0.95826 0.91725 1.21075 1.43193 0.97745 0.92847 0.90390 1.25010 0.94743 0.97289 0.96471 1.69902 1.46209 1.35293 1.02854 0.86853 0.79244 0.86100 0.77534 1.20412 1.21527 1.18953 1.26130 0.99738 0.90467 0.93490 1.74986 1.17670 1.11155 1.10325 1.78666 1.11399 1.15092 1.01305 1.78852 1.18830 0.92088 1.18034 1.47849 1.38696 1.08881 1.11699 1.22520 1.11066 0.74887 0.97784 1.23482 0.94712 1.04282 0.96497 1.23577 0.96108 1.02913 0.97277 0.89659 0.91028 0.91445 0.75955 0.76714 0.91807 0.91929 0.95045 0.90866 0.93440 0.93351 0.90882 0.94974 0.96310 0.96806 0.92798 0.81868 0.86447 0.86067 0.85931 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.47 37.16 0.35 -0.90 16 2 C 0.25 2.23 2.96 -69.09 -0.20 2.03 16 3 H 0.11 0.91 6.42 -51.92 -0.33 0.57 16 4 N -0.74 -7.58 5.07 -59.82 -0.30 -7.89 16 5 C 0.71 9.42 8.53 -86.92 -0.74 8.68 16 6 O -0.59 -9.73 16.01 5.29 0.08 -9.65 16 7 N -0.73 -9.67 4.96 -65.22 -0.32 -9.99 16 8 C 0.14 2.31 4.56 -4.04 -0.02 2.29 16 9 C -0.06 -1.11 0.54 -154.51 -0.08 -1.20 16 10 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 11 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 12 C 0.00 -0.04 3.11 -27.89 -0.09 -0.12 16 13 C -0.51 -13.48 8.20 -34.44 -0.28 -13.76 16 14 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 15 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 16 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 17 Si 0.88 21.24 27.47 -169.99 -4.67 16.58 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 21 C 0.18 1.73 6.91 -155.44 -1.07 0.65 16 22 N -0.29 -3.47 12.09 32.70 0.40 -3.07 16 23 N -0.07 -0.92 13.43 60.35 0.81 -0.11 16 24 N -0.09 -1.02 12.69 60.35 0.77 -0.25 16 25 N -0.27 -2.33 3.67 -51.81 -0.19 -2.52 16 26 C 0.04 0.20 6.58 -67.93 -0.45 -0.25 16 27 C -0.15 -0.52 10.16 -26.70 -0.27 -0.79 16 28 C -0.16 -0.48 10.46 -26.69 -0.28 -0.76 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.41 3.78 8.39 -40.82 -0.34 3.44 16 33 H 0.40 4.56 6.18 -40.82 -0.25 4.30 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 37 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.40 6.62 -51.94 -0.34 1.06 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 43 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.16 0.51 7.23 -51.93 -0.38 0.13 16 46 H 0.12 0.55 7.85 -51.93 -0.41 0.14 16 47 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 49 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -33.38 396.60 -6.90 -40.28 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.58 Total: 3.05 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.64 Total: -6.14 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 1.93 Total: -50.08 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.38 -6.90 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807172508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.806 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds