Wall clock time and date at job start Tue Mar 31 2020 21:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 5 5 C 1.34784 * 119.99971 * 84.99732 * 4 2 1 6 6 O 1.21583 * 119.99855 * 359.72712 * 5 4 2 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 2 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47042 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47233 * 300.00642 * 9 8 7 11 11 C 1.53002 * 109.47128 * 60.00327 * 9 8 7 12 12 C 1.52996 * 109.47346 * 180.02562 * 9 8 7 13 13 C 1.50699 * 109.47235 * 180.02562 * 12 9 8 14 14 H 1.07996 * 120.00370 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99790 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99822 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00076 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00205 * 17 15 13 19 19 H 1.48503 * 109.47010 * 210.00270 * 17 15 13 20 20 H 1.48500 * 109.46954 * 330.00103 * 17 15 13 21 21 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 22 22 N 1.31071 * 126.66448 * 75.02676 * 21 2 1 23 23 N 1.28830 * 107.99651 * 179.97438 * 22 21 2 24 24 N 1.28742 * 109.39748 * 359.97438 * 23 22 21 25 25 N 1.29012 * 108.80436 * 359.74700 * 24 23 22 26 26 C 1.46509 * 126.43342 * 180.24735 * 25 24 23 27 27 C 1.52992 * 117.50044 * 8.92540 * 26 25 24 28 28 C 1.53001 * 117.49883 * 300.26193 * 26 25 24 29 29 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 30 30 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 32 32 H 0.96999 * 119.99984 * 264.99579 * 4 2 1 33 33 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 35 35 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 36 36 H 1.08992 * 109.47399 * 59.99834 * 10 9 8 37 37 H 1.09001 * 109.47194 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.46724 * 299.99348 * 10 9 8 39 39 H 1.09001 * 109.47248 * 59.99447 * 11 9 8 40 40 H 1.08988 * 109.47757 * 179.97438 * 11 9 8 41 41 H 1.09002 * 109.46838 * 300.00410 * 11 9 8 42 42 H 1.09004 * 109.47108 * 300.00289 * 12 9 8 43 43 H 1.09000 * 109.46870 * 60.00183 * 12 9 8 44 44 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 45 45 H 1.09004 * 115.54676 * 154.59685 * 26 25 24 46 46 H 1.09004 * 117.49923 * 359.97438 * 27 26 25 47 47 H 1.09002 * 117.50127 * 145.02008 * 27 26 25 48 48 H 1.08993 * 117.49663 * 214.98138 * 28 26 25 49 49 H 1.09005 * 117.49702 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8530 1.1604 -2.4129 7 7 2.5966 -0.6533 -3.4575 8 6 2.7359 0.0776 -4.7196 9 6 3.2604 -0.8686 -5.8016 10 6 4.6231 -1.4212 -5.3790 11 6 2.2766 -2.0254 -5.9881 12 6 3.4066 -0.1053 -7.1195 13 6 3.9226 -1.0374 -8.1853 14 1 4.1264 -2.0707 -7.9465 15 6 4.1355 -0.5706 -9.4651 16 7 4.5853 -1.3842 -10.3953 17 14 3.7837 1.2169 -9.8780 18 1 5.0054 2.0283 -9.6454 19 1 3.3810 1.3257 -11.3032 20 1 2.6849 1.7175 -9.0135 21 6 2.0323 -0.7104 1.2304 22 7 2.0371 -2.0042 1.4399 23 7 2.5449 -2.2169 2.6047 24 7 2.8648 -1.0923 3.1435 25 7 2.5695 -0.1400 2.3248 26 6 2.7762 1.2935 2.5464 27 6 3.5886 1.7085 3.7746 28 6 2.0743 1.9311 3.7471 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.8273 -1.5944 -3.4140 34 1 1.7651 0.4709 -5.0208 35 1 3.4365 0.9020 -4.5866 36 1 4.5195 -1.9649 -4.4401 37 1 4.9970 -2.0949 -6.1500 38 1 5.3241 -0.5970 -5.2462 39 1 1.3057 -1.6318 -6.2890 40 1 2.6499 -2.6992 -6.7591 41 1 2.1729 -2.5691 -5.0490 42 1 2.4359 0.2887 -7.4207 43 1 4.1077 0.7186 -6.9863 44 1 4.7355 -1.0557 -11.2956 45 1 2.8814 1.8980 1.6455 46 1 3.9690 0.9151 4.4180 47 1 4.2280 2.5863 3.6819 48 1 1.7183 2.9552 3.6364 49 1 1.4585 1.2842 4.3720 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807172508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:51 Heat of formation + Delta-G solvation = 83.316816 kcal Electronic energy + Delta-G solvation = -29111.120688 eV Core-core repulsion = 25110.979777 eV Total energy + Delta-G solvation = -4000.140911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.41264 -41.25942 -38.99595 -38.88557 -37.08414 -35.19211 -34.79778 -34.11889 -33.27071 -31.13753 -29.62809 -27.96579 -27.48581 -26.48084 -25.90885 -24.47391 -23.62120 -23.16057 -22.18211 -21.71119 -20.18490 -19.39920 -18.87961 -18.68980 -18.15448 -17.69780 -16.63433 -16.44696 -16.22774 -16.13724 -15.58400 -15.34681 -15.29686 -14.91152 -14.65378 -14.46259 -14.21086 -14.14688 -14.12880 -13.76214 -13.48987 -13.28203 -13.13596 -12.91492 -12.81913 -12.77607 -12.60215 -12.57047 -12.27519 -12.22561 -12.13055 -11.75080 -11.73943 -11.60620 -11.48892 -11.42295 -11.14472 -11.00752 -10.88276 -10.68283 -10.48153 -9.84930 -8.20058 -6.20284 -0.03965 0.71275 0.94924 1.38379 1.40996 1.51189 1.65205 2.10369 2.41433 2.46518 2.58395 3.05980 3.15458 3.22533 3.42999 3.59235 3.69765 3.93995 3.96023 4.03484 4.10460 4.15393 4.19468 4.36652 4.57071 4.63184 4.65596 4.67524 4.74808 4.76523 4.82703 4.90533 4.98390 5.04762 5.05395 5.10018 5.12184 5.17842 5.29365 5.33418 5.38715 5.43997 5.51839 5.59553 5.71981 5.78354 5.90720 6.40597 6.86928 6.99286 7.36930 7.42339 7.51574 8.95573 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022220 B = 0.002105 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.802068 B =13295.389307 C =13680.473039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.257 3.743 3 H 0.122 0.878 4 N -0.732 5.732 5 C 0.710 3.290 6 O -0.622 6.622 7 N -0.726 5.726 8 C 0.159 3.841 9 C -0.057 4.057 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.003 4.003 13 C -0.501 4.501 14 H 0.050 0.950 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.936 3.064 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.248 1.248 21 C 0.183 3.817 22 N -0.311 5.311 23 N -0.104 5.104 24 N -0.099 5.099 25 N -0.260 5.260 26 C 0.013 3.987 27 C -0.149 4.149 28 C -0.145 4.145 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.411 0.589 33 H 0.408 0.592 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.015 0.985 44 H 0.262 0.738 45 H 0.184 0.816 46 H 0.101 0.899 47 H 0.145 0.855 48 H 0.150 0.850 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 8.512 30.678 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.148 3.852 3 H 0.139 0.861 4 N -0.389 5.389 5 C 0.410 3.590 6 O -0.503 6.503 7 N -0.382 5.382 8 C 0.035 3.965 9 C -0.058 4.058 10 C -0.181 4.181 11 C -0.182 4.182 12 C -0.041 4.041 13 C -0.539 4.539 14 H 0.068 0.932 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.217 1.217 20 H -0.171 1.171 21 C -0.096 4.096 22 N -0.161 5.161 23 N -0.097 5.097 24 N -0.085 5.085 25 N -0.061 5.061 26 C -0.088 4.088 27 C -0.186 4.186 28 C -0.183 4.183 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.247 0.753 33 H 0.245 0.755 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.201 0.799 46 H 0.120 0.880 47 H 0.163 0.837 48 H 0.168 0.832 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.671 8.379 31.221 33.007 hybrid contribution 0.305 0.163 -1.305 1.350 sum -6.365 8.542 29.917 31.757 Atomic orbital electron populations 1.22172 0.91263 1.03742 1.04182 1.19061 0.95548 0.95000 0.75588 0.86060 1.44919 1.71985 1.14416 1.07606 1.15837 0.78071 0.84564 0.80510 1.90899 1.58554 1.15686 1.85113 1.45080 1.69995 1.14519 1.08575 1.21157 1.00388 0.93764 0.81199 1.20554 0.96034 0.95545 0.93668 1.21704 0.95720 1.00528 1.00181 1.21703 0.97997 0.97473 1.00978 1.19565 0.96228 0.95421 0.92899 1.21381 1.41454 0.97302 0.93784 0.93202 1.25881 0.95187 1.01642 0.96688 1.70052 1.48607 1.37467 1.03341 0.85864 0.79711 0.81002 0.77303 1.19724 1.21702 1.17149 1.26140 0.99603 0.89964 0.93874 1.74898 1.18254 1.12573 1.10349 1.78642 1.12903 1.16139 1.02033 1.78781 1.18887 0.92287 1.18530 1.48126 1.37168 1.09916 1.10853 1.23126 1.13137 0.73040 0.99507 1.23580 0.95499 1.04507 0.95047 1.23677 0.95642 1.03739 0.95232 0.90555 0.91505 0.89462 0.75266 0.75535 0.92383 0.92415 0.91614 0.93844 0.93540 0.93469 0.93853 0.91488 0.96428 0.96628 0.92941 0.79865 0.88038 0.83711 0.83207 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.47 71.98 0.68 -1.40 16 2 C 0.26 3.91 2.96 44.24 0.13 4.04 16 3 H 0.12 1.64 6.42 -2.38 -0.02 1.62 16 4 N -0.73 -13.22 5.07 -461.42 -2.34 -15.56 16 5 C 0.71 17.13 8.53 179.05 1.53 18.66 16 6 O -0.62 -18.92 16.01 -3.98 -0.06 -18.98 16 7 N -0.73 -17.21 4.96 -478.53 -2.37 -19.58 16 8 C 0.16 4.73 4.56 86.38 0.39 5.12 16 9 C -0.06 -1.96 0.54 -52.18 -0.03 -1.99 16 10 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 11 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 12 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 13 C -0.50 -26.89 8.20 25.60 0.21 -26.68 16 14 H 0.05 2.90 5.92 -2.91 -0.02 2.89 16 15 C 0.00 0.11 5.47 84.66 0.46 0.57 16 16 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 17 Si 0.94 43.77 27.47 68.60 1.88 45.65 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 21 C 0.18 3.20 6.91 138.13 0.95 4.16 16 22 N -0.31 -7.11 12.09 -50.46 -0.61 -7.72 16 23 N -0.10 -2.64 13.43 37.01 0.50 -2.15 16 24 N -0.10 -2.11 12.69 37.02 0.47 -1.64 16 25 N -0.26 -4.06 3.67 -317.82 -1.17 -5.23 16 26 C 0.01 0.10 6.58 44.99 0.30 0.39 16 27 C -0.15 -0.67 10.16 30.62 0.31 -0.36 16 28 C -0.14 -0.47 10.46 30.62 0.32 -0.15 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.41 6.72 8.39 -92.71 -0.78 5.94 16 33 H 0.41 8.02 6.18 -92.71 -0.57 7.44 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 37 H 0.04 1.67 6.62 -2.39 -0.02 1.66 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 41 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 42 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 43 H 0.02 0.67 7.57 -2.39 -0.02 0.66 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.18 0.54 7.23 -2.38 -0.02 0.52 16 46 H 0.10 0.83 7.85 -2.38 -0.02 0.81 16 47 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -74.06 396.60 2.69 -71.37 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.42 Total: 16.78 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.51 Total: -4.61 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -5.23 Total: -110.22 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -74.06 2.69 -71.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807172508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.685 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds