Wall clock time and date at job start Tue Mar 31 2020 21:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21577 * 120.00380 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99632 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99876 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.46932 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47404 * 299.99950 * 9 8 7 11 11 C 1.53005 * 109.47384 * 59.99994 * 9 8 7 12 12 C 1.53005 * 109.47033 * 179.97438 * 9 8 7 13 13 C 1.50702 * 109.46947 * 179.97438 * 12 9 8 14 14 H 1.07997 * 120.00260 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99511 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99776 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00188 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46588 * 90.00240 * 17 15 13 19 19 H 1.48497 * 109.46974 * 210.00149 * 17 15 13 20 20 H 1.48498 * 109.47267 * 330.00290 * 17 15 13 21 21 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 22 22 N 1.31076 * 126.66161 * 284.68922 * 21 2 1 23 23 N 1.28846 * 107.99101 * 179.89759 * 22 21 2 24 24 N 1.28732 * 109.39566 * 0.37229 * 23 22 21 25 25 N 1.29021 * 108.81214 * 359.77318 * 24 23 22 26 26 C 1.46500 * 126.43866 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49975 * 8.76998 * 26 25 24 28 28 C 1.52997 * 117.50143 * 300.10774 * 26 25 24 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96995 * 119.99663 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46889 * 299.99849 * 8 7 5 35 35 H 1.08999 * 109.47178 * 59.99886 * 8 7 5 36 36 H 1.09000 * 109.46878 * 59.99799 * 10 9 8 37 37 H 1.08997 * 109.47454 * 180.02562 * 10 9 8 38 38 H 1.08999 * 109.46930 * 300.00215 * 10 9 8 39 39 H 1.09001 * 109.46714 * 59.99855 * 11 9 8 40 40 H 1.08996 * 109.47450 * 179.97438 * 11 9 8 41 41 H 1.09000 * 109.46913 * 300.00210 * 11 9 8 42 42 H 1.09000 * 109.46880 * 299.99942 * 12 9 8 43 43 H 1.08999 * 109.47085 * 59.99917 * 12 9 8 44 44 H 0.96998 * 120.00182 * 179.97438 * 16 15 13 45 45 H 1.09001 * 115.55061 * 154.43623 * 26 25 24 46 46 H 1.08993 * 117.49977 * 0.02562 * 27 26 25 47 47 H 1.09003 * 117.49959 * 145.01963 * 27 26 25 48 48 H 1.08997 * 117.50295 * 214.97972 * 28 26 25 49 49 H 1.08998 * 117.49677 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1615 2.4116 7 7 2.5959 -0.6537 3.4578 8 6 2.7363 0.0773 4.7196 9 6 3.2594 -0.8693 5.8018 10 6 2.2740 -2.0246 5.9886 11 6 4.6214 -1.4240 5.3794 12 6 3.4067 -0.1057 7.1195 13 6 3.9213 -1.0383 8.1856 14 1 4.1236 -2.0720 7.9471 15 6 4.1339 -0.5716 9.4655 16 7 4.5835 -1.3853 10.3957 17 14 3.7848 1.2166 9.8778 18 1 2.3764 1.3547 10.3280 19 1 4.6970 1.6618 10.9617 20 1 4.0033 2.0545 8.6714 21 6 2.0323 -0.7104 -1.2304 22 7 2.0418 -2.0047 -1.4378 23 7 2.5453 -2.2170 -2.6047 24 7 2.8644 -1.0924 -3.1437 25 7 2.5637 -0.1396 -2.3274 26 6 2.7636 1.2942 -2.5521 27 6 3.1953 1.7366 -3.9517 28 6 4.1947 1.7788 -2.7930 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 2.8259 -1.5950 3.4143 34 1 3.4380 0.9006 4.5863 35 1 1.7660 0.4720 5.0207 36 1 2.1695 -2.5685 5.0498 37 1 2.6464 -2.6988 6.7599 38 1 1.3037 -1.6295 6.2896 39 1 5.3234 -0.6009 5.2463 40 1 4.9942 -2.0980 6.1506 41 1 4.5169 -1.9678 4.4405 42 1 4.1090 0.7171 6.9860 43 1 2.4366 0.2897 7.4206 44 1 4.7335 -1.0570 11.2960 45 1 2.0951 1.9544 -1.9995 46 1 3.3301 0.9610 -4.7054 47 1 2.8110 2.6880 -4.3197 48 1 4.4676 2.7579 -2.3992 49 1 4.9875 1.0309 -2.7839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807172509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:56 Heat of formation + Delta-G solvation = 106.515723 kcal Electronic energy + Delta-G solvation = -29150.744970 eV Core-core repulsion = 25151.610039 eV Total energy + Delta-G solvation = -3999.134931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.64681 -40.20052 -38.49355 -37.64598 -36.12563 -34.15985 -33.75854 -32.63898 -32.01376 -30.31642 -27.80576 -26.56359 -26.28620 -25.79963 -25.10456 -23.33598 -22.92321 -22.21825 -21.49930 -20.70532 -19.10223 -18.33231 -17.79792 -17.46692 -16.96899 -16.60532 -15.90170 -15.54525 -15.40156 -14.78293 -14.27555 -14.15242 -13.99740 -13.87821 -13.73271 -13.43242 -13.31264 -12.86952 -12.73039 -12.64778 -12.47736 -12.37254 -12.35863 -12.27332 -12.03159 -11.54489 -11.38745 -11.25960 -11.13456 -11.02111 -10.90629 -10.62728 -10.50143 -10.45296 -10.26974 -9.98285 -9.76065 -9.54062 -9.51889 -9.00459 -8.76464 -8.54251 -6.04759 -4.02107 0.67348 1.30717 1.77958 2.55556 2.80128 3.11005 3.30792 3.32034 3.38881 3.42431 3.55419 3.83321 3.95762 4.05057 4.23429 4.44849 4.56615 4.64774 4.81482 4.87900 4.91128 5.13403 5.18714 5.27458 5.27709 5.28729 5.33804 5.40903 5.52240 5.62725 5.66976 5.79458 6.09650 6.10801 6.11197 6.14115 6.31435 6.46872 6.59022 6.67628 6.81663 6.92339 7.01051 7.04948 7.18990 7.35482 7.77086 7.96961 8.16910 8.51475 8.55649 8.99444 9.57746 11.07950 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002140 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.249718 B =13081.947180 C =13416.387286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.254 3.746 3 H 0.112 0.888 4 N -0.742 5.742 5 C 0.707 3.293 6 O -0.593 6.593 7 N -0.732 5.732 8 C 0.145 3.855 9 C -0.063 4.063 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.002 4.002 13 C -0.511 4.511 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.180 3.820 22 N -0.292 5.292 23 N -0.071 5.071 24 N -0.093 5.093 25 N -0.271 5.271 26 C 0.040 3.960 27 C -0.152 4.152 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.397 0.603 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.262 0.738 45 H 0.164 0.836 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 6.327 -28.219 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.144 3.856 3 H 0.129 0.871 4 N -0.400 5.400 5 C 0.407 3.593 6 O -0.471 6.471 7 N -0.387 5.387 8 C 0.021 3.979 9 C -0.063 4.063 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.039 4.039 13 C -0.549 4.549 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.098 4.098 22 N -0.141 5.141 23 N -0.065 5.065 24 N -0.078 5.078 25 N -0.072 5.072 26 C -0.063 4.063 27 C -0.189 4.189 28 C -0.199 4.199 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.240 0.760 33 H 0.233 0.767 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.181 0.819 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.169 6.217 -28.713 29.830 hybrid contribution -0.054 0.844 0.729 1.116 sum -5.223 7.061 -27.984 29.330 Atomic orbital electron populations 1.22243 0.92237 1.03947 1.03634 1.18913 0.94874 0.95050 0.76734 0.87054 1.45002 1.72805 1.14203 1.07990 1.15856 0.78418 0.84979 0.80081 1.90911 1.57432 1.14207 1.84592 1.45328 1.69837 1.14174 1.09334 1.21540 1.01029 0.94486 0.80811 1.20704 0.95160 0.95387 0.95089 1.21776 0.98622 0.98106 1.00119 1.21773 0.96405 1.00879 0.99523 1.19590 0.96614 0.96012 0.91730 1.21076 1.43286 0.97674 0.92822 0.90390 1.25008 0.94772 0.97259 0.96465 1.69899 1.46260 1.35291 1.02814 0.86854 0.78315 0.86255 0.78313 1.20374 1.21543 1.18977 1.26133 0.99989 0.90435 0.93267 1.74992 1.17736 1.11152 1.10256 1.78668 1.11453 1.15106 1.01253 1.78847 1.18792 0.92093 1.18044 1.47853 1.38909 1.08860 1.11527 1.22506 1.03014 0.75080 1.05671 1.23479 1.00862 1.04281 0.90326 1.23579 0.90974 1.04192 1.01109 0.91498 0.89634 0.90979 0.75963 0.76726 0.91922 0.91825 0.94976 0.90887 0.93359 0.93435 0.90869 0.95048 0.96355 0.96760 0.92798 0.81884 0.86468 0.86103 0.85882 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.47 37.16 0.35 -0.90 16 2 C 0.25 2.22 2.94 -69.08 -0.20 2.02 16 3 H 0.11 0.92 6.66 -51.93 -0.35 0.58 16 4 N -0.74 -7.59 5.07 -59.81 -0.30 -7.89 16 5 C 0.71 9.43 8.53 -86.91 -0.74 8.69 16 6 O -0.59 -9.75 16.00 5.30 0.08 -9.66 16 7 N -0.73 -9.67 4.96 -65.23 -0.32 -10.00 16 8 C 0.14 2.31 4.56 -4.04 -0.02 2.29 16 9 C -0.06 -1.11 0.54 -154.51 -0.08 -1.20 16 10 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 11 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 12 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 13 C -0.51 -13.47 8.20 -34.44 -0.28 -13.76 16 14 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 15 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 17 Si 0.88 21.23 27.47 -169.99 -4.67 16.57 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 21 C 0.18 1.73 6.92 -155.43 -1.07 0.65 16 22 N -0.29 -3.47 12.08 32.70 0.40 -3.07 16 23 N -0.07 -0.92 13.43 60.35 0.81 -0.11 16 24 N -0.09 -1.01 12.69 60.35 0.77 -0.25 16 25 N -0.27 -2.33 3.67 -51.81 -0.19 -2.52 16 26 C 0.04 0.20 6.43 -67.93 -0.44 -0.24 16 27 C -0.15 -0.50 10.16 -26.69 -0.27 -0.77 16 28 C -0.16 -0.62 10.46 -26.69 -0.28 -0.90 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.41 3.78 8.38 -40.82 -0.34 3.44 16 33 H 0.40 4.56 6.18 -40.82 -0.25 4.30 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 37 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 41 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 42 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 43 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.16 0.40 7.60 -51.93 -0.39 0.01 16 46 H 0.12 0.53 7.85 -51.93 -0.41 0.12 16 47 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 48 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -33.40 397.03 -6.91 -40.31 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.61 Total: 3.12 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.63 Total: -6.23 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 1.93 Total: -50.09 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.40 -6.91 -40.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807172509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.827 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds