Wall clock time and date at job start Tue Mar 31 2020 21:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21577 * 120.00380 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99632 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99876 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.46932 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47404 * 299.99950 * 9 8 7 11 11 C 1.53005 * 109.47384 * 59.99994 * 9 8 7 12 12 C 1.53005 * 109.47033 * 179.97438 * 9 8 7 13 13 C 1.50702 * 109.46947 * 179.97438 * 12 9 8 14 14 H 1.07997 * 120.00260 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99511 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99776 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00188 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46588 * 90.00240 * 17 15 13 19 19 H 1.48497 * 109.46974 * 210.00149 * 17 15 13 20 20 H 1.48498 * 109.47267 * 330.00290 * 17 15 13 21 21 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 22 22 N 1.31076 * 126.66161 * 284.68922 * 21 2 1 23 23 N 1.28846 * 107.99101 * 179.89759 * 22 21 2 24 24 N 1.28732 * 109.39566 * 0.37229 * 23 22 21 25 25 N 1.29021 * 108.81214 * 359.77318 * 24 23 22 26 26 C 1.46500 * 126.43866 * 179.97438 * 25 24 23 27 27 C 1.53002 * 117.49975 * 8.76998 * 26 25 24 28 28 C 1.52997 * 117.50143 * 300.10774 * 26 25 24 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96995 * 119.99663 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.46889 * 299.99849 * 8 7 5 35 35 H 1.08999 * 109.47178 * 59.99886 * 8 7 5 36 36 H 1.09000 * 109.46878 * 59.99799 * 10 9 8 37 37 H 1.08997 * 109.47454 * 180.02562 * 10 9 8 38 38 H 1.08999 * 109.46930 * 300.00215 * 10 9 8 39 39 H 1.09001 * 109.46714 * 59.99855 * 11 9 8 40 40 H 1.08996 * 109.47450 * 179.97438 * 11 9 8 41 41 H 1.09000 * 109.46913 * 300.00210 * 11 9 8 42 42 H 1.09000 * 109.46880 * 299.99942 * 12 9 8 43 43 H 1.08999 * 109.47085 * 59.99917 * 12 9 8 44 44 H 0.96998 * 120.00182 * 179.97438 * 16 15 13 45 45 H 1.09001 * 115.55061 * 154.43623 * 26 25 24 46 46 H 1.08993 * 117.49977 * 0.02562 * 27 26 25 47 47 H 1.09003 * 117.49959 * 145.01963 * 27 26 25 48 48 H 1.08997 * 117.50295 * 214.97972 * 28 26 25 49 49 H 1.08998 * 117.49677 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1615 2.4116 7 7 2.5959 -0.6537 3.4578 8 6 2.7363 0.0773 4.7196 9 6 3.2594 -0.8693 5.8018 10 6 2.2740 -2.0246 5.9886 11 6 4.6214 -1.4240 5.3794 12 6 3.4067 -0.1057 7.1195 13 6 3.9213 -1.0383 8.1856 14 1 4.1236 -2.0720 7.9471 15 6 4.1339 -0.5716 9.4655 16 7 4.5835 -1.3853 10.3957 17 14 3.7848 1.2166 9.8778 18 1 2.3764 1.3547 10.3280 19 1 4.6970 1.6618 10.9617 20 1 4.0033 2.0545 8.6714 21 6 2.0323 -0.7104 -1.2304 22 7 2.0418 -2.0047 -1.4378 23 7 2.5453 -2.2170 -2.6047 24 7 2.8644 -1.0924 -3.1437 25 7 2.5637 -0.1396 -2.3274 26 6 2.7636 1.2942 -2.5521 27 6 3.1953 1.7366 -3.9517 28 6 4.1947 1.7788 -2.7930 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 2.8259 -1.5950 3.4143 34 1 3.4380 0.9006 4.5863 35 1 1.7660 0.4720 5.0207 36 1 2.1695 -2.5685 5.0498 37 1 2.6464 -2.6988 6.7599 38 1 1.3037 -1.6295 6.2896 39 1 5.3234 -0.6009 5.2463 40 1 4.9942 -2.0980 6.1506 41 1 4.5169 -1.9678 4.4405 42 1 4.1090 0.7171 6.9860 43 1 2.4366 0.2897 7.4206 44 1 4.7335 -1.0570 11.2960 45 1 2.0951 1.9544 -1.9995 46 1 3.3301 0.9610 -4.7054 47 1 2.8110 2.6880 -4.3197 48 1 4.4676 2.7579 -2.3992 49 1 4.9875 1.0309 -2.7839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807172509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:55 Heat of formation + Delta-G solvation = 83.275575 kcal Electronic energy + Delta-G solvation = -29151.752738 eV Core-core repulsion = 25151.610039 eV Total energy + Delta-G solvation = -4000.142699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.41067 -41.25543 -38.99473 -38.88786 -37.08173 -35.18983 -34.80039 -34.11782 -33.27176 -31.13623 -29.62737 -27.96529 -27.48605 -26.49037 -25.89631 -24.46868 -23.59933 -23.17840 -22.20891 -21.70753 -20.18298 -19.37578 -18.87526 -18.63143 -18.24538 -17.66780 -16.63970 -16.43287 -16.24801 -16.14551 -15.58312 -15.33927 -15.29536 -14.91373 -14.61435 -14.45751 -14.20730 -14.17091 -14.12844 -13.77192 -13.50027 -13.27682 -13.14179 -12.91307 -12.81772 -12.76456 -12.61455 -12.57602 -12.27355 -12.22857 -12.13241 -11.74979 -11.74563 -11.61200 -11.48708 -11.41544 -11.13970 -11.01167 -10.88231 -10.68227 -10.47481 -9.84585 -8.19987 -6.20228 -0.04585 0.71708 0.95081 1.38611 1.40989 1.51177 1.65032 2.10891 2.41488 2.46509 2.58723 3.06266 3.15552 3.21985 3.43463 3.61159 3.68691 3.93476 3.96031 4.02725 4.10543 4.15786 4.19527 4.35815 4.57614 4.62391 4.65417 4.66100 4.75074 4.76639 4.82839 4.89767 4.98436 5.04046 5.04970 5.10413 5.12162 5.18022 5.29719 5.33444 5.38823 5.44110 5.52035 5.59625 5.72073 5.78405 5.90919 6.40664 6.86986 6.99572 7.36873 7.42424 7.52014 8.95661 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002140 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.249718 B =13081.947180 C =13416.387286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.256 3.744 3 H 0.122 0.878 4 N -0.731 5.731 5 C 0.710 3.290 6 O -0.622 6.622 7 N -0.726 5.726 8 C 0.160 3.840 9 C -0.057 4.057 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.003 4.003 13 C -0.501 4.501 14 H 0.050 0.950 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.936 3.064 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.248 1.248 21 C 0.183 3.817 22 N -0.311 5.311 23 N -0.104 5.104 24 N -0.099 5.099 25 N -0.260 5.260 26 C 0.016 3.984 27 C -0.140 4.140 28 C -0.158 4.158 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.411 0.589 33 H 0.407 0.593 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.016 0.984 44 H 0.262 0.738 45 H 0.192 0.808 46 H 0.102 0.898 47 H 0.150 0.850 48 H 0.145 0.855 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 8.489 -30.406 32.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.147 3.853 3 H 0.140 0.860 4 N -0.389 5.389 5 C 0.410 3.590 6 O -0.502 6.502 7 N -0.382 5.382 8 C 0.035 3.965 9 C -0.058 4.058 10 C -0.182 4.182 11 C -0.181 4.181 12 C -0.041 4.041 13 C -0.539 4.539 14 H 0.068 0.932 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.217 1.217 20 H -0.172 1.172 21 C -0.095 4.095 22 N -0.161 5.161 23 N -0.097 5.097 24 N -0.085 5.085 25 N -0.061 5.061 26 C -0.085 4.085 27 C -0.177 4.177 28 C -0.197 4.197 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.209 0.791 46 H 0.120 0.880 47 H 0.168 0.832 48 H 0.163 0.837 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.085 8.360 -30.955 32.636 hybrid contribution 0.259 0.146 1.312 1.345 sum -5.826 8.506 -29.643 31.385 Atomic orbital electron populations 1.22197 0.91248 1.03820 1.04246 1.19072 0.95501 0.95092 0.75605 0.86012 1.44900 1.71996 1.14398 1.07574 1.15833 0.78062 0.84567 0.80507 1.90897 1.58670 1.15542 1.85117 1.45080 1.70027 1.14485 1.08596 1.21153 1.00392 0.93740 0.81207 1.20554 0.96035 0.95539 0.93673 1.21706 0.97998 0.97486 1.00974 1.21700 0.95728 1.00503 1.00172 1.19566 0.96130 0.95514 0.92902 1.21382 1.41548 0.97237 0.93754 0.93203 1.25879 0.95212 1.01612 0.96681 1.70049 1.48661 1.37458 1.03306 0.85865 0.78220 0.81306 0.78495 1.19698 1.21713 1.17163 1.26151 0.99834 0.89928 0.93623 1.74904 1.18329 1.12577 1.10271 1.78645 1.12938 1.16156 1.01988 1.78776 1.18842 0.92307 1.18535 1.48133 1.37421 1.09900 1.10684 1.23170 1.04461 0.73291 1.07575 1.23580 0.99956 1.04944 0.89270 1.23648 0.89914 1.04583 1.01507 0.89343 0.90523 0.91483 0.75283 0.75552 0.92492 0.92322 0.91496 0.93866 0.93436 0.93575 0.93835 0.91622 0.96476 0.96580 0.92940 0.79150 0.87952 0.83216 0.83665 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.47 71.98 0.68 -1.36 16 2 C 0.26 3.87 2.94 44.24 0.13 4.00 16 3 H 0.12 1.65 6.66 -2.39 -0.02 1.63 16 4 N -0.73 -13.22 5.07 -461.42 -2.34 -15.56 16 5 C 0.71 17.16 8.53 179.05 1.53 18.68 16 6 O -0.62 -18.93 16.00 -3.96 -0.06 -18.99 16 7 N -0.73 -17.23 4.96 -478.54 -2.37 -19.60 16 8 C 0.16 4.73 4.56 86.38 0.39 5.13 16 9 C -0.06 -1.96 0.54 -52.18 -0.03 -1.99 16 10 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 11 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 12 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 13 C -0.50 -26.88 8.20 25.60 0.21 -26.67 16 14 H 0.05 2.90 5.92 -2.91 -0.02 2.89 16 15 C 0.00 0.12 5.47 84.66 0.46 0.58 16 16 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 17 Si 0.94 43.75 27.47 68.60 1.88 45.63 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 21 C 0.18 3.20 6.92 138.13 0.96 4.15 16 22 N -0.31 -7.10 12.08 -50.45 -0.61 -7.71 16 23 N -0.10 -2.65 13.43 37.01 0.50 -2.15 16 24 N -0.10 -2.10 12.69 37.02 0.47 -1.63 16 25 N -0.26 -4.05 3.67 -317.82 -1.17 -5.22 16 26 C 0.02 0.12 6.43 44.99 0.29 0.41 16 27 C -0.14 -0.57 10.16 30.62 0.31 -0.26 16 28 C -0.16 -0.86 10.46 30.62 0.32 -0.53 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.41 6.73 8.38 -92.71 -0.78 5.96 16 33 H 0.41 8.03 6.18 -92.71 -0.57 7.46 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 37 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 41 H 0.06 1.67 6.86 -2.39 -0.02 1.65 16 42 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 43 H 0.02 0.69 7.57 -2.39 -0.02 0.68 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.19 0.23 7.60 -2.39 -0.02 0.21 16 46 H 0.10 0.78 7.85 -2.39 -0.02 0.76 16 47 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.21 397.03 2.68 -71.53 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.42 Total: 16.89 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.51 Total: -4.84 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -5.23 Total: -110.21 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.06 Total: -18.99 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -74.21 2.68 -71.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807172509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.801 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds