Wall clock time and date at job start Tue Mar 31 2020 19:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00036 * 2 1 4 4 N 1.46506 * 109.46627 * 124.20108 * 3 2 1 5 5 C 1.36737 * 127.13742 * 275.56249 * 4 3 2 6 6 C 1.50704 * 126.34528 * 359.97438 * 5 4 3 7 7 H 1.08998 * 110.43859 * 359.18648 * 6 5 4 8 8 C 1.54816 * 110.48086 * 236.50244 * 6 5 4 9 9 C 1.54995 * 102.08819 * 220.44158 * 8 6 5 10 10 O 1.44382 * 103.49498 * 37.02320 * 9 8 6 11 11 C 1.43741 * 106.97007 * 319.94052 * 10 9 8 12 12 N 1.30289 * 107.30630 * 180.22672 * 5 4 3 13 13 N 1.28530 * 110.05382 * 359.78367 * 12 5 4 14 14 C 1.31223 * 109.85781 * 359.97438 * 13 12 5 15 15 N 1.38577 * 126.47057 * 179.97438 * 14 13 12 16 16 C 1.46901 * 111.00013 * 117.02181 * 15 14 13 17 17 C 1.50696 * 109.47461 * 301.46893 * 16 15 14 18 18 H 1.08000 * 119.99953 * 5.05476 * 17 16 15 19 19 C 1.37881 * 120.00211 * 185.05002 * 17 16 15 20 20 N 1.31509 * 119.99963 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99868 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47020 * 89.99541 * 21 19 17 23 23 H 1.48496 * 109.47081 * 209.99871 * 21 19 17 24 24 H 1.48502 * 109.46908 * 329.99666 * 21 19 17 25 25 C 1.46902 * 111.00108 * 353.06989 * 15 14 13 26 26 C 1.53001 * 109.46950 * 199.39400 * 25 15 14 27 27 O 1.42899 * 109.46971 * 63.32267 * 26 25 15 28 28 C 1.42899 * 114.00292 * 179.97438 * 27 26 25 29 29 H 1.07998 * 119.99739 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.99709 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00063 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46748 * 4.20859 * 3 2 1 33 33 H 1.08996 * 109.47317 * 244.19635 * 3 2 1 34 34 H 1.08998 * 110.90925 * 338.63401 * 8 6 5 35 35 H 1.08997 * 110.90946 * 102.24455 * 8 6 5 36 36 H 1.09001 * 110.62123 * 278.52078 * 9 8 6 37 37 H 1.09008 * 110.61686 * 155.52417 * 9 8 6 38 38 H 1.08997 * 109.87902 * 267.07990 * 11 10 9 39 39 H 1.09008 * 109.99835 * 146.00775 * 11 10 9 40 40 H 1.09000 * 109.46703 * 61.46964 * 16 15 14 41 41 H 1.09004 * 109.47210 * 181.46145 * 16 15 14 42 42 H 0.96997 * 119.99959 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.46709 * 79.39937 * 25 15 14 44 44 H 1.08997 * 109.47199 * 319.39949 * 25 15 14 45 45 H 1.09002 * 109.47239 * 183.31722 * 26 25 15 46 46 H 1.08994 * 109.47572 * 303.32308 * 26 25 15 47 47 H 1.09000 * 109.47262 * 300.00324 * 28 27 26 48 48 H 1.08999 * 109.46535 * 60.00047 * 28 27 26 49 49 H 1.08994 * 109.47342 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9801 1.3397 1.1424 5 6 2.6868 1.7117 2.4251 6 6 1.3455 2.1693 2.9378 7 1 0.6135 2.1819 2.1304 8 6 1.4632 3.5693 3.5882 9 6 0.5482 3.4276 4.8313 10 8 0.7808 2.0712 5.2679 11 6 0.8673 1.2588 4.0853 12 7 3.7830 1.6024 3.1207 13 7 4.7406 1.1855 2.3715 14 6 4.3027 1.0045 1.1478 15 7 5.0450 0.5626 0.0643 16 6 4.5338 -0.7206 -0.4359 17 6 4.5799 -1.7447 0.6687 18 1 4.8742 -1.4510 1.6654 19 6 4.2462 -3.0566 0.4068 20 7 4.2869 -3.9504 1.3707 21 14 3.7377 -3.5648 -1.3173 22 1 4.9392 -3.9768 -2.0865 23 1 2.7866 -4.7024 -1.2378 24 1 3.0830 -2.4189 -1.9982 25 6 6.4700 0.4637 0.4074 26 6 7.3039 0.4531 -0.8753 27 8 7.1318 1.6924 -1.5655 28 6 7.8725 1.7869 -2.7839 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3576 2.1322 0.0754 33 1 2.6326 1.3961 -0.9251 34 1 2.4918 3.7757 3.8839 35 1 1.0902 4.3427 2.9169 36 1 -0.4971 3.5685 4.5566 37 1 0.8413 4.1359 5.6063 38 1 -0.1127 0.8457 3.8469 39 1 1.5823 0.4506 4.2397 40 1 3.5046 -0.5952 -0.7724 41 1 5.1501 -1.0572 -1.2695 42 1 4.0526 -4.8734 1.1864 43 1 6.6467 -0.4571 0.9633 44 1 6.7563 1.3186 1.0200 45 1 8.3561 0.3205 -0.6236 46 1 6.9770 -0.3671 -1.5144 47 1 8.9364 1.6822 -2.5715 48 1 7.5577 0.9943 -3.4628 49 1 7.6885 2.7565 -3.2467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809884901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:01 Heat of formation + Delta-G solvation = 31.390823 kcal Electronic energy + Delta-G solvation = -31196.227745 eV Core-core repulsion = 27161.542402 eV Total energy + Delta-G solvation = -4034.685342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.38948 -39.18412 -38.01753 -36.56404 -35.82900 -32.94158 -32.64249 -32.24088 -29.94800 -29.45046 -28.49932 -26.81563 -26.39074 -25.78797 -23.44943 -22.69792 -22.18903 -21.71879 -20.54990 -19.47468 -19.26686 -17.35999 -17.06216 -16.46903 -16.20423 -15.96983 -15.82391 -15.48537 -15.12010 -14.97059 -14.62637 -14.56049 -14.26718 -13.99264 -13.89349 -13.26893 -12.86369 -12.59112 -12.52328 -12.25448 -12.07039 -11.95603 -11.71191 -11.53277 -11.44897 -11.35867 -11.19855 -11.08028 -10.92918 -10.88728 -10.70501 -10.54174 -10.27126 -9.78849 -9.69099 -9.66863 -9.58042 -9.41233 -9.33213 -8.84961 -8.77844 -7.37551 -6.26656 -4.29788 2.07089 2.44355 3.00744 3.08414 3.16652 3.18949 3.54098 3.95789 4.12870 4.18944 4.45259 4.50827 4.65294 4.80522 4.87042 4.93397 5.03863 5.07185 5.13620 5.18666 5.36122 5.38585 5.46190 5.51261 5.61441 5.64907 5.66065 5.69631 5.70078 5.76096 5.82712 5.88994 5.95405 6.02853 6.05629 6.16680 6.37420 6.52765 6.59295 6.62736 6.70462 6.74326 6.80989 6.91247 7.12899 7.26096 7.44596 7.61351 7.99270 8.23458 8.81445 9.30907 9.49240 10.85610 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.004811 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.169652 B = 5818.861687 C = 7189.756646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.168 4.168 3 C 0.142 3.858 4 N -0.472 5.472 5 C 0.158 3.842 6 C -0.023 4.023 7 H 0.092 0.908 8 C -0.143 4.143 9 C 0.048 3.952 10 O -0.370 6.370 11 C 0.063 3.937 12 N -0.272 5.272 13 N -0.335 5.335 14 C 0.418 3.582 15 N -0.448 5.448 16 C 0.150 3.850 17 C -0.559 4.559 18 H 0.086 0.914 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.865 3.135 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.264 1.264 25 C 0.074 3.926 26 C 0.068 3.932 27 O -0.379 6.379 28 C 0.032 3.968 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 12.817 -5.342 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.187 4.187 3 C 0.019 3.981 4 N -0.167 5.167 5 C -0.110 4.110 6 C -0.045 4.045 7 H 0.111 0.889 8 C -0.182 4.182 9 C -0.029 4.029 10 O -0.289 6.289 11 C -0.015 4.015 12 N -0.111 5.111 13 N -0.180 5.180 14 C 0.062 3.938 15 N -0.171 5.171 16 C 0.025 3.975 17 C -0.597 4.597 18 H 0.104 0.896 19 C -0.123 4.123 20 N -0.520 5.520 21 Si 0.692 3.308 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.053 4.053 26 C -0.009 4.009 27 O -0.298 6.298 28 C -0.065 4.065 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.262 13.065 -4.253 14.713 hybrid contribution -0.909 -1.459 -2.132 2.739 sum -6.171 11.606 -6.385 14.613 Atomic orbital electron populations 1.23825 0.95440 1.01923 1.00603 1.23521 0.96378 0.99338 0.99479 1.20853 0.92094 0.96474 0.88667 1.45893 1.09204 1.51906 1.09689 1.23873 0.98131 1.07600 0.81387 1.20739 0.89587 0.95713 0.98412 0.88930 1.23231 1.02670 0.95141 0.97128 1.23525 0.97953 0.85079 0.96308 1.88911 1.93329 1.18093 1.28571 1.23155 1.00765 0.94074 0.83506 1.73809 0.95873 1.15920 1.25499 1.74639 1.22832 1.22698 0.97782 1.22444 0.81826 0.97854 0.91662 1.59057 1.03146 1.30322 1.24544 1.20591 0.96194 0.84127 0.96610 1.21653 1.48131 0.92899 0.97051 0.89645 1.24894 0.94536 0.96366 0.96517 1.69912 1.47100 1.02848 1.32148 0.87026 0.79375 0.78966 0.85460 1.19813 1.20915 1.18849 1.22024 0.84220 1.04001 0.95041 1.22653 0.98068 0.86224 0.93948 1.87986 1.69192 1.36938 1.35667 1.22663 0.95031 1.01602 0.87249 0.87863 0.88706 0.84889 0.89359 0.87507 0.88998 0.90145 0.92341 0.88849 0.91907 0.88719 0.94501 0.94265 0.92389 0.89365 0.89873 0.92901 0.92819 0.94680 0.94492 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.17 -2.59 8.99 -36.03 -0.32 -2.92 16 3 C 0.14 2.09 5.39 -5.19 -0.03 2.06 16 4 N -0.47 -8.73 2.79 -115.36 -0.32 -9.06 16 5 C 0.16 2.88 6.36 -154.02 -0.98 1.90 16 6 C -0.02 -0.32 3.46 -90.24 -0.31 -0.63 16 7 H 0.09 1.04 7.16 -51.93 -0.37 0.67 16 8 C -0.14 -1.67 6.70 -24.72 -0.17 -1.83 16 9 C 0.05 0.52 7.72 38.21 0.29 0.82 16 10 O -0.37 -5.54 11.52 -35.23 -0.41 -5.95 16 11 C 0.06 0.92 7.36 37.73 0.28 1.20 16 12 N -0.27 -5.94 11.97 32.99 0.40 -5.54 16 13 N -0.34 -7.81 11.04 30.31 0.33 -7.48 16 14 C 0.42 8.98 5.76 -318.88 -1.84 7.15 16 15 N -0.45 -9.27 4.58 -175.88 -0.80 -10.08 16 16 C 0.15 3.30 3.96 -4.98 -0.02 3.28 16 17 C -0.56 -14.67 8.02 -34.44 -0.28 -14.95 16 18 H 0.09 2.60 7.07 -52.49 -0.37 2.23 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 20 N -0.88 -25.86 13.96 55.43 0.77 -25.08 16 21 Si 0.87 19.66 27.37 -169.99 -4.65 15.01 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.26 -5.61 6.69 56.52 0.38 -5.23 16 25 C 0.07 1.46 4.82 -3.82 -0.02 1.44 16 26 C 0.07 1.13 6.12 37.16 0.23 1.35 16 27 O -0.38 -6.24 10.62 -35.23 -0.37 -6.62 16 28 C 0.03 0.38 11.01 101.05 1.11 1.49 16 29 H 0.10 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.09 0.89 7.84 -52.49 -0.41 0.48 16 31 H 0.13 2.58 6.71 -52.49 -0.35 2.23 16 32 H 0.09 0.99 7.15 -51.93 -0.37 0.62 16 33 H 0.11 1.57 7.72 -51.93 -0.40 1.17 16 34 H 0.09 1.27 7.70 -51.93 -0.40 0.87 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 40 H 0.04 0.79 3.63 -51.93 -0.19 0.61 16 41 H 0.04 0.85 5.81 -51.93 -0.30 0.55 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.09 1.93 6.64 -51.93 -0.34 1.58 16 44 H 0.08 1.65 7.47 -51.93 -0.39 1.27 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.91 6.73 -51.93 -0.35 0.56 16 47 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -32.98 391.01 -8.51 -41.49 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.61 Total: 6.71 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.73 Total: 0.70 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.38 Total: -57.23 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.78 Total: -12.57 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.65 Total: 15.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.98 -8.51 -41.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809884901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.880 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds