Wall clock time and date at job start Tue Mar 31 2020 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00036 * 2 1 4 4 N 1.46506 * 109.46627 * 124.20108 * 3 2 1 5 5 C 1.36737 * 127.13742 * 275.56249 * 4 3 2 6 6 C 1.50704 * 126.34528 * 359.97438 * 5 4 3 7 7 H 1.08998 * 110.43859 * 359.18648 * 6 5 4 8 8 C 1.54816 * 110.48086 * 236.50244 * 6 5 4 9 9 C 1.54995 * 102.08819 * 220.44158 * 8 6 5 10 10 O 1.44382 * 103.49498 * 37.02320 * 9 8 6 11 11 C 1.43741 * 106.97007 * 319.94052 * 10 9 8 12 12 N 1.30289 * 107.30630 * 180.22672 * 5 4 3 13 13 N 1.28530 * 110.05382 * 359.78367 * 12 5 4 14 14 C 1.31223 * 109.85781 * 359.97438 * 13 12 5 15 15 N 1.38577 * 126.47057 * 179.97438 * 14 13 12 16 16 C 1.46901 * 111.00013 * 117.02181 * 15 14 13 17 17 C 1.50696 * 109.47461 * 301.46893 * 16 15 14 18 18 H 1.08000 * 119.99953 * 5.05476 * 17 16 15 19 19 C 1.37881 * 120.00211 * 185.05002 * 17 16 15 20 20 N 1.31509 * 119.99963 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99868 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47020 * 89.99541 * 21 19 17 23 23 H 1.48496 * 109.47081 * 209.99871 * 21 19 17 24 24 H 1.48502 * 109.46908 * 329.99666 * 21 19 17 25 25 C 1.46902 * 111.00108 * 353.06989 * 15 14 13 26 26 C 1.53001 * 109.46950 * 199.39400 * 25 15 14 27 27 O 1.42899 * 109.46971 * 63.32267 * 26 25 15 28 28 C 1.42899 * 114.00292 * 179.97438 * 27 26 25 29 29 H 1.07998 * 119.99739 * 179.97438 * 1 2 3 30 30 H 1.07993 * 119.99709 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00063 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46748 * 4.20859 * 3 2 1 33 33 H 1.08996 * 109.47317 * 244.19635 * 3 2 1 34 34 H 1.08998 * 110.90925 * 338.63401 * 8 6 5 35 35 H 1.08997 * 110.90946 * 102.24455 * 8 6 5 36 36 H 1.09001 * 110.62123 * 278.52078 * 9 8 6 37 37 H 1.09008 * 110.61686 * 155.52417 * 9 8 6 38 38 H 1.08997 * 109.87902 * 267.07990 * 11 10 9 39 39 H 1.09008 * 109.99835 * 146.00775 * 11 10 9 40 40 H 1.09000 * 109.46703 * 61.46964 * 16 15 14 41 41 H 1.09004 * 109.47210 * 181.46145 * 16 15 14 42 42 H 0.96997 * 119.99959 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.46709 * 79.39937 * 25 15 14 44 44 H 1.08997 * 109.47199 * 319.39949 * 25 15 14 45 45 H 1.09002 * 109.47239 * 183.31722 * 26 25 15 46 46 H 1.08994 * 109.47572 * 303.32308 * 26 25 15 47 47 H 1.09000 * 109.47262 * 300.00324 * 28 27 26 48 48 H 1.08999 * 109.46535 * 60.00047 * 28 27 26 49 49 H 1.08994 * 109.47342 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9801 1.3397 1.1424 5 6 2.6868 1.7117 2.4251 6 6 1.3455 2.1693 2.9378 7 1 0.6135 2.1819 2.1304 8 6 1.4632 3.5693 3.5882 9 6 0.5482 3.4276 4.8313 10 8 0.7808 2.0712 5.2679 11 6 0.8673 1.2588 4.0853 12 7 3.7830 1.6024 3.1207 13 7 4.7406 1.1855 2.3715 14 6 4.3027 1.0045 1.1478 15 7 5.0450 0.5626 0.0643 16 6 4.5338 -0.7206 -0.4359 17 6 4.5799 -1.7447 0.6687 18 1 4.8742 -1.4510 1.6654 19 6 4.2462 -3.0566 0.4068 20 7 4.2869 -3.9504 1.3707 21 14 3.7377 -3.5648 -1.3173 22 1 4.9392 -3.9768 -2.0865 23 1 2.7866 -4.7024 -1.2378 24 1 3.0830 -2.4189 -1.9982 25 6 6.4700 0.4637 0.4074 26 6 7.3039 0.4531 -0.8753 27 8 7.1318 1.6924 -1.5655 28 6 7.8725 1.7869 -2.7839 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3576 2.1322 0.0754 33 1 2.6326 1.3961 -0.9251 34 1 2.4918 3.7757 3.8839 35 1 1.0902 4.3427 2.9169 36 1 -0.4971 3.5685 4.5566 37 1 0.8413 4.1359 5.6063 38 1 -0.1127 0.8457 3.8469 39 1 1.5823 0.4506 4.2397 40 1 3.5046 -0.5952 -0.7724 41 1 5.1501 -1.0572 -1.2695 42 1 4.0526 -4.8734 1.1864 43 1 6.6467 -0.4571 0.9633 44 1 6.7563 1.3186 1.0200 45 1 8.3561 0.3205 -0.6236 46 1 6.9770 -0.3671 -1.5144 47 1 8.9364 1.6822 -2.5715 48 1 7.5577 0.9943 -3.4628 49 1 7.6885 2.7565 -3.2467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809884901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:00 Heat of formation + Delta-G solvation = 8.097997 kcal Electronic energy + Delta-G solvation = -31197.237797 eV Core-core repulsion = 27161.542402 eV Total energy + Delta-G solvation = -4035.695395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.91103 -40.26921 -39.44051 -37.98230 -37.09817 -34.72965 -34.06630 -33.53706 -31.24010 -30.90832 -29.93355 -28.31858 -27.63262 -26.98477 -24.94652 -24.09598 -23.54245 -22.98521 -21.90119 -20.79652 -20.61827 -19.28143 -18.46729 -17.74506 -17.52693 -17.18619 -17.03359 -16.85003 -16.64192 -16.11948 -15.96827 -15.84017 -15.66735 -15.45260 -15.07165 -14.64179 -14.37809 -14.09168 -13.85766 -13.48992 -13.33590 -13.32337 -13.04275 -12.84877 -12.66304 -12.62821 -12.51701 -12.41625 -12.33022 -12.28621 -12.00931 -11.88764 -11.86235 -11.78982 -11.27192 -10.99980 -10.87303 -10.78170 -10.54633 -10.50699 -10.39115 -9.05452 -8.36630 -6.44959 0.79609 1.10405 1.29275 1.29377 1.40263 1.69447 1.95350 2.25040 2.89442 2.94018 2.97681 3.00730 3.30796 3.61800 3.66784 3.82060 3.85540 3.98803 4.07920 4.13362 4.18880 4.24524 4.29309 4.35136 4.45209 4.49584 4.57972 4.61018 4.62856 4.73427 4.75945 4.81451 4.85174 4.88447 4.89294 4.93211 4.95132 4.96421 5.03083 5.14106 5.20300 5.29136 5.56766 5.68967 5.75199 5.83642 5.93175 6.13669 6.34004 6.40799 6.63576 7.19740 7.91577 8.80151 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.004811 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.169652 B = 5818.861687 C = 7189.756646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C 0.138 3.862 4 N -0.471 5.471 5 C 0.178 3.822 6 C -0.023 4.023 7 H 0.134 0.866 8 C -0.137 4.137 9 C 0.047 3.953 10 O -0.400 6.400 11 C 0.065 3.935 12 N -0.322 5.322 13 N -0.377 5.377 14 C 0.396 3.604 15 N -0.437 5.437 16 C 0.162 3.838 17 C -0.549 4.549 18 H 0.027 0.973 19 C 0.022 3.978 20 N -0.941 5.941 21 Si 0.937 3.063 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.236 1.236 25 C 0.078 3.922 26 C 0.079 3.921 27 O -0.402 6.402 28 C 0.025 3.975 29 H 0.106 0.894 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.267 0.733 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.044 0.956 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 15.165 -8.568 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.229 4.229 3 C 0.017 3.983 4 N -0.164 5.164 5 C -0.091 4.091 6 C -0.044 4.044 7 H 0.152 0.848 8 C -0.175 4.175 9 C -0.029 4.029 10 O -0.320 6.320 11 C -0.013 4.013 12 N -0.160 5.160 13 N -0.221 5.221 14 C 0.038 3.962 15 N -0.159 5.159 16 C 0.036 3.964 17 C -0.587 4.587 18 H 0.046 0.954 19 C -0.177 4.177 20 N -0.581 5.581 21 Si 0.759 3.241 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.159 1.159 25 C -0.050 4.050 26 C 0.002 3.998 27 O -0.321 6.321 28 C -0.071 4.071 29 H 0.124 0.876 30 H 0.157 0.843 31 H 0.102 0.898 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.421 15.452 -7.494 19.127 hybrid contribution 0.007 -2.117 -0.982 2.333 sum -8.414 13.335 -8.476 17.901 Atomic orbital electron populations 1.24160 0.94042 1.04129 0.95194 1.23182 0.97499 0.97629 1.04544 1.21213 0.92129 0.97877 0.87038 1.46215 1.08577 1.50823 1.10833 1.24809 0.98927 1.04428 0.80975 1.21106 0.87585 0.96497 0.99235 0.84790 1.23230 1.01470 0.94694 0.98129 1.23815 0.99717 0.83133 0.96252 1.88881 1.93674 1.20224 1.29187 1.23062 1.00907 0.93316 0.83986 1.73705 0.97215 1.18465 1.26615 1.74492 1.24654 1.23845 0.99122 1.22613 0.83466 0.98674 0.91419 1.59182 1.03291 1.29093 1.24376 1.20433 0.97218 0.83619 0.95135 1.21671 1.46965 0.94215 0.95899 0.95432 1.25823 0.94419 0.96107 1.01333 1.70099 1.49409 1.03368 1.35185 0.85878 0.79390 0.79183 0.79630 1.18654 1.21061 1.15881 1.21925 0.84638 1.01691 0.96728 1.22461 0.98421 0.86575 0.92301 1.87935 1.70385 1.36350 1.37425 1.22910 0.95550 1.02982 0.85647 0.87588 0.84336 0.89831 0.84572 0.87779 0.92096 0.86226 0.88778 0.87718 0.88944 0.93559 0.93033 0.93173 0.92424 0.92908 0.90882 0.90662 0.92949 0.93116 0.93695 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 14.32 67.78 0.97 -1.74 16 2 C -0.21 -5.99 8.99 25.64 0.23 -5.76 16 3 C 0.14 3.70 5.39 85.63 0.46 4.16 16 4 N -0.47 -17.38 2.79 -518.90 -1.45 -18.83 16 5 C 0.18 6.54 6.36 137.64 0.88 7.42 16 6 C -0.02 -0.58 3.46 -10.55 -0.04 -0.62 16 7 H 0.13 2.24 7.16 -2.39 -0.02 2.22 16 8 C -0.14 -2.80 6.70 31.90 0.21 -2.59 16 9 C 0.05 0.87 7.72 72.66 0.56 1.43 16 10 O -0.40 -11.60 11.52 -148.98 -1.72 -13.31 16 11 C 0.07 1.86 7.36 72.35 0.53 2.39 16 12 N -0.32 -14.96 11.97 -49.54 -0.59 -15.55 16 13 N -0.38 -18.98 11.04 -58.01 -0.64 -19.62 16 14 C 0.40 17.83 5.76 260.11 1.50 19.33 16 15 N -0.44 -18.73 4.58 -710.35 -3.25 -21.98 16 16 C 0.16 7.26 3.96 85.56 0.34 7.60 16 17 C -0.55 -30.53 8.02 25.60 0.21 -30.33 16 18 H 0.03 1.83 7.07 -2.91 -0.02 1.81 16 19 C 0.02 1.25 5.47 84.66 0.46 1.71 16 20 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 21 Si 0.94 40.92 27.37 68.60 1.88 42.79 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.24 -9.15 6.69 99.48 0.67 -8.48 16 25 C 0.08 3.25 4.82 86.30 0.42 3.67 16 26 C 0.08 2.63 6.12 71.98 0.44 3.07 16 27 O -0.40 -12.82 10.62 -148.98 -1.58 -14.41 16 28 C 0.03 0.55 11.01 113.37 1.25 1.80 16 29 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.14 1.56 7.84 -2.91 -0.02 1.54 16 31 H 0.08 3.26 6.71 -2.91 -0.02 3.24 16 32 H 0.14 2.29 7.15 -2.39 -0.02 2.27 16 33 H 0.10 2.83 7.72 -2.39 -0.02 2.81 16 34 H 0.06 1.65 7.70 -2.39 -0.02 1.64 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.75 7.69 -2.38 -0.02 1.73 16 40 H 0.05 2.20 3.63 -2.39 -0.01 2.19 16 41 H 0.05 2.15 5.81 -2.38 -0.01 2.14 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.05 2.55 6.64 -2.38 -0.02 2.53 16 44 H 0.07 3.14 7.47 -2.39 -0.02 3.13 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.05 1.74 6.73 -2.39 -0.02 1.72 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 48 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -82.38 391.01 2.27 -80.11 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.91 Total: 27.23 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 8.42 Total: 11.55 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -5.63 Total: -133.96 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -3.30 Total: -27.72 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.79 kcal Total: -82.38 2.27 -80.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809884901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.208 kcal (2) G-P(sol) polarization free energy of solvation -82.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds