Wall clock time and date at job start Tue Mar 31 2020 19:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99888 * 2 1 4 4 N 1.46501 * 109.46857 * 123.74569 * 3 2 1 5 5 C 1.36736 * 127.13505 * 83.92939 * 4 3 2 6 6 C 1.50701 * 126.34700 * 359.97438 * 5 4 3 7 7 H 1.09002 * 110.74983 * 356.24550 * 6 5 4 8 8 C 1.55309 * 110.84753 * 119.71243 * 6 5 4 9 9 C 1.54945 * 100.98054 * 152.30172 * 8 6 5 10 10 O 1.43693 * 105.11580 * 323.62009 * 9 8 6 11 11 C 1.43239 * 109.99187 * 24.35446 * 10 9 8 12 12 N 1.30291 * 107.30771 * 179.73058 * 5 4 3 13 13 N 1.28527 * 110.05480 * 0.26608 * 12 5 4 14 14 C 1.31225 * 109.85735 * 359.97438 * 13 12 5 15 15 N 1.38580 * 126.47143 * 180.02562 * 14 13 12 16 16 C 1.46899 * 111.00194 * 255.29974 * 15 14 13 17 17 C 1.50705 * 109.46901 * 65.55418 * 16 15 14 18 18 H 1.08000 * 119.99845 * 356.68985 * 17 16 15 19 19 C 1.37881 * 120.00010 * 176.69157 * 17 16 15 20 20 N 1.31513 * 119.99879 * 4.53034 * 19 17 16 21 21 Si 1.86798 * 119.99863 * 184.52685 * 19 17 16 22 22 H 1.48506 * 109.47260 * 5.00552 * 21 19 17 23 23 H 1.48501 * 109.46770 * 125.00440 * 21 19 17 24 24 H 1.48492 * 109.47269 * 245.00383 * 21 19 17 25 25 C 1.46900 * 111.00101 * 19.25680 * 15 14 13 26 26 C 1.53011 * 109.47047 * 163.58471 * 25 15 14 27 27 O 1.42903 * 109.46913 * 67.56707 * 26 25 15 28 28 C 1.42901 * 113.99667 * 184.61975 * 27 26 25 29 29 H 1.08008 * 120.00408 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99989 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00031 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47005 * 3.74905 * 3 2 1 33 33 H 1.08990 * 109.47183 * 243.74825 * 3 2 1 34 34 H 1.08997 * 111.12860 * 270.24194 * 8 6 5 35 35 H 1.09001 * 111.11989 * 34.36773 * 8 6 5 36 36 H 1.09003 * 110.30978 * 82.49450 * 9 8 6 37 37 H 1.08998 * 110.31213 * 204.66435 * 9 8 6 38 38 H 1.09004 * 109.83578 * 238.81551 * 11 10 9 39 39 H 1.09005 * 109.90080 * 117.89139 * 11 10 9 40 40 H 1.09000 * 109.47717 * 185.55224 * 16 15 14 41 41 H 1.09001 * 109.47039 * 305.55749 * 16 15 14 42 42 H 0.97002 * 119.99737 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.47227 * 283.58264 * 25 15 14 44 44 H 1.08997 * 109.47322 * 43.58760 * 25 15 14 45 45 H 1.08997 * 109.46783 * 187.56529 * 26 25 15 46 46 H 1.09002 * 109.46727 * 307.57011 * 26 25 15 47 47 H 1.09001 * 109.46971 * 184.90483 * 28 27 26 48 48 H 1.08999 * 109.46785 * 304.90119 * 28 27 26 49 49 H 1.09001 * 109.47152 * 64.90296 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9721 1.3444 1.1485 5 6 4.2288 0.8110 1.2255 6 6 4.9499 0.0629 0.1340 7 1 4.3065 -0.0652 -0.7365 8 6 6.2679 0.7869 -0.2547 9 6 7.1221 -0.4045 -0.7565 10 8 6.7705 -1.5042 0.0989 11 6 5.4637 -1.2990 0.6483 12 7 4.6893 1.0741 2.4155 13 7 3.8137 1.7274 3.0925 14 6 2.7389 1.9183 2.3643 15 7 1.5868 2.5823 2.7544 16 6 0.5023 1.6329 3.0380 17 6 0.8687 0.7950 4.2358 18 1 1.8347 0.9150 4.7037 19 6 -0.0293 -0.1249 4.7344 20 7 -1.1690 -0.3349 4.1127 21 14 0.3731 -1.0729 6.2929 22 1 1.6494 -0.5707 6.8622 23 1 -0.7182 -0.8848 7.2823 24 1 0.5079 -2.5167 5.9731 25 6 1.8448 3.4482 3.9127 26 6 0.7013 4.4538 4.0626 27 8 -0.4946 3.7638 4.4313 28 6 -1.6516 4.6000 4.4961 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3570 2.1325 0.0672 33 1 2.6387 1.3926 -0.9216 34 1 6.0980 1.5114 -1.0510 35 1 6.7263 1.2608 0.6133 36 1 6.8751 -0.6374 -1.7923 37 1 8.1835 -0.1752 -0.6623 38 1 5.5178 -1.2867 1.7369 39 1 4.7943 -2.0945 0.3205 40 1 -0.4162 2.1818 3.2459 41 1 0.3511 0.9855 2.1742 42 1 -1.8009 -0.9818 4.4637 43 1 1.9130 2.8388 4.8139 44 1 2.7824 3.9837 3.7644 45 1 0.9548 5.1797 4.8351 46 1 0.5454 4.9704 3.1155 47 1 -2.4979 4.0211 4.8658 48 1 -1.4595 5.4342 5.1708 49 1 -1.8797 4.9824 3.5012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809884902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:06 Heat of formation + Delta-G solvation = 30.550730 kcal Electronic energy + Delta-G solvation = -31222.966163 eV Core-core repulsion = 27188.244392 eV Total energy + Delta-G solvation = -4034.721771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39512 -39.26325 -37.90256 -36.17359 -35.72663 -33.03579 -32.49492 -32.13359 -29.98468 -29.30019 -28.02997 -26.53223 -26.27469 -25.45544 -23.44168 -22.60623 -22.33141 -21.77774 -20.37692 -19.64591 -19.29447 -17.20349 -16.75331 -16.41695 -16.03387 -15.91227 -15.67615 -15.46119 -14.96958 -14.81371 -14.65079 -14.35553 -14.18753 -13.76499 -13.35635 -13.23615 -13.19017 -12.67045 -12.20403 -12.14801 -11.90950 -11.58021 -11.55016 -11.51297 -11.29357 -11.17766 -11.08017 -11.03017 -10.91217 -10.87379 -10.71744 -10.34002 -9.96931 -9.90583 -9.64964 -9.52555 -9.51968 -9.14990 -9.03728 -8.59858 -8.28721 -7.41969 -5.98841 -3.99883 2.17260 2.45828 3.03477 3.33324 3.41119 3.48453 3.51690 3.80670 4.38317 4.42219 4.50660 4.56243 4.64849 4.76426 4.87842 4.99673 5.04926 5.11377 5.14768 5.27885 5.37772 5.54207 5.58492 5.60896 5.67979 5.70074 5.75445 5.76114 5.82305 5.89297 5.93818 5.96542 6.01361 6.09621 6.13057 6.18263 6.37568 6.59862 6.77997 6.78657 6.89133 6.92368 7.06383 7.37351 7.62540 7.64394 7.78776 7.97811 8.22211 8.27833 9.04981 9.44319 9.63990 11.08913 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.004258 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.424523 B = 6574.963186 C = 7208.870655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.197 4.197 3 C 0.147 3.853 4 N -0.470 5.470 5 C 0.154 3.846 6 C -0.024 4.024 7 H 0.096 0.904 8 C -0.144 4.144 9 C 0.053 3.947 10 O -0.382 6.382 11 C 0.065 3.935 12 N -0.279 5.279 13 N -0.332 5.332 14 C 0.413 3.587 15 N -0.468 5.468 16 C 0.179 3.821 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.072 3.928 20 N -0.891 5.891 21 Si 0.883 3.117 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.287 1.287 25 C 0.074 3.926 26 C 0.070 3.930 27 O -0.353 6.353 28 C 0.031 3.969 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.258 0.742 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.081 0.919 48 H 0.030 0.970 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 6.241 -12.317 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.216 4.216 3 C 0.024 3.976 4 N -0.165 5.165 5 C -0.114 4.114 6 C -0.045 4.045 7 H 0.114 0.886 8 C -0.182 4.182 9 C -0.023 4.023 10 O -0.301 6.301 11 C -0.013 4.013 12 N -0.119 5.119 13 N -0.176 5.176 14 C 0.057 3.943 15 N -0.192 5.192 16 C 0.057 3.943 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.530 5.530 21 Si 0.711 3.289 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.213 1.213 25 C -0.054 4.054 26 C -0.008 4.008 27 O -0.271 6.271 28 C -0.066 4.066 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.048 0.952 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.052 6.149 -11.416 14.309 hybrid contribution -1.033 -0.681 0.380 1.294 sum 5.018 5.469 -11.036 13.300 Atomic orbital electron populations 1.23867 0.95413 1.02532 0.94591 1.22861 0.96438 0.97317 1.04943 1.20806 0.92241 0.98069 0.86482 1.46038 1.13602 1.44284 1.12527 1.23749 0.84829 1.04891 0.97885 1.20875 0.95843 0.94098 0.93722 0.88601 1.23340 0.94007 0.98220 1.02652 1.23356 0.99754 0.85352 0.93885 1.88416 1.33396 1.43827 1.64452 1.23160 0.83740 0.94398 0.99987 1.73782 1.24086 1.12931 1.01060 1.74681 1.00820 1.19077 1.23036 1.22675 0.94930 0.94255 0.82483 1.59502 1.02625 1.21140 1.35950 1.20411 0.88116 0.89276 0.96543 1.21669 1.01519 1.20160 1.13923 0.91846 1.24763 0.94915 0.96594 0.96740 1.69940 1.08890 1.34984 1.39189 0.86666 0.78437 0.79682 0.84069 1.19659 1.21056 1.21349 1.21958 0.95427 0.94224 0.93793 1.22485 0.86158 0.94193 0.97919 1.88336 1.15624 1.33345 1.89813 1.22650 0.89854 0.94957 0.99115 0.88085 0.87877 0.87331 0.87978 0.89308 0.89836 0.88960 0.92213 0.89557 0.89577 0.91080 0.90539 0.94510 0.93256 0.90154 0.90692 0.93505 0.93632 0.90088 0.95177 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 12.62 29.02 0.37 -1.53 16 2 C -0.20 -2.91 9.16 -36.02 -0.33 -3.24 16 3 C 0.15 2.08 5.90 -5.19 -0.03 2.05 16 4 N -0.47 -8.43 2.79 -115.37 -0.32 -8.75 16 5 C 0.15 2.69 6.64 -154.02 -1.02 1.67 16 6 C -0.02 -0.31 3.39 -89.82 -0.30 -0.62 16 7 H 0.10 1.03 7.26 -51.93 -0.38 0.65 16 8 C -0.14 -1.57 6.60 -24.48 -0.16 -1.73 16 9 C 0.05 0.54 7.78 38.18 0.30 0.84 16 10 O -0.38 -5.25 11.36 -35.23 -0.40 -5.65 16 11 C 0.06 0.90 7.39 37.88 0.28 1.18 16 12 N -0.28 -5.85 11.82 32.99 0.39 -5.46 16 13 N -0.33 -7.59 11.14 30.32 0.34 -7.26 16 14 C 0.41 8.75 5.97 -318.87 -1.90 6.85 16 15 N -0.47 -9.80 4.66 -175.87 -0.82 -10.62 16 16 C 0.18 4.34 4.67 -4.97 -0.02 4.32 16 17 C -0.53 -14.68 7.58 -34.44 -0.26 -14.94 16 18 H 0.06 1.86 6.34 -52.49 -0.33 1.53 16 19 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 20 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 21 Si 0.88 22.43 29.54 -169.99 -5.02 17.41 16 22 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C 0.07 1.45 4.82 -3.82 -0.02 1.43 16 26 C 0.07 1.18 6.22 37.16 0.23 1.41 16 27 O -0.35 -6.93 7.76 -35.23 -0.27 -7.21 16 28 C 0.03 0.47 11.01 101.05 1.11 1.58 16 29 H 0.10 1.47 7.84 -52.48 -0.41 1.06 16 30 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.10 1.45 7.74 -51.93 -0.40 1.05 16 33 H 0.09 0.95 7.61 -51.93 -0.40 0.55 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.18 8.00 -51.93 -0.42 0.76 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.42 7.55 -51.93 -0.39 1.03 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.98 5.50 -51.93 -0.29 1.69 16 41 H 0.04 0.91 5.06 -51.93 -0.26 0.65 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.08 1.85 6.11 -51.93 -0.32 1.53 16 44 H 0.07 1.37 7.81 -51.93 -0.41 0.97 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -33.23 393.43 -9.09 -42.32 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.78 Total: 2.74 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.87 Total: 1.18 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.32 Total: -56.72 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.67 Total: -12.86 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.23 -9.09 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809884902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.872 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds