Wall clock time and date at job start Tue Mar 31 2020 19:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99888 * 2 1 4 4 N 1.46501 * 109.46857 * 123.74569 * 3 2 1 5 5 C 1.36736 * 127.13505 * 83.92939 * 4 3 2 6 6 C 1.50701 * 126.34700 * 359.97438 * 5 4 3 7 7 H 1.09002 * 110.74983 * 356.24550 * 6 5 4 8 8 C 1.55309 * 110.84753 * 119.71243 * 6 5 4 9 9 C 1.54945 * 100.98054 * 152.30172 * 8 6 5 10 10 O 1.43693 * 105.11580 * 323.62009 * 9 8 6 11 11 C 1.43239 * 109.99187 * 24.35446 * 10 9 8 12 12 N 1.30291 * 107.30771 * 179.73058 * 5 4 3 13 13 N 1.28527 * 110.05480 * 0.26608 * 12 5 4 14 14 C 1.31225 * 109.85735 * 359.97438 * 13 12 5 15 15 N 1.38580 * 126.47143 * 180.02562 * 14 13 12 16 16 C 1.46899 * 111.00194 * 255.29974 * 15 14 13 17 17 C 1.50705 * 109.46901 * 65.55418 * 16 15 14 18 18 H 1.08000 * 119.99845 * 356.68985 * 17 16 15 19 19 C 1.37881 * 120.00010 * 176.69157 * 17 16 15 20 20 N 1.31513 * 119.99879 * 4.53034 * 19 17 16 21 21 Si 1.86798 * 119.99863 * 184.52685 * 19 17 16 22 22 H 1.48506 * 109.47260 * 5.00552 * 21 19 17 23 23 H 1.48501 * 109.46770 * 125.00440 * 21 19 17 24 24 H 1.48492 * 109.47269 * 245.00383 * 21 19 17 25 25 C 1.46900 * 111.00101 * 19.25680 * 15 14 13 26 26 C 1.53011 * 109.47047 * 163.58471 * 25 15 14 27 27 O 1.42903 * 109.46913 * 67.56707 * 26 25 15 28 28 C 1.42901 * 113.99667 * 184.61975 * 27 26 25 29 29 H 1.08008 * 120.00408 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99989 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00031 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47005 * 3.74905 * 3 2 1 33 33 H 1.08990 * 109.47183 * 243.74825 * 3 2 1 34 34 H 1.08997 * 111.12860 * 270.24194 * 8 6 5 35 35 H 1.09001 * 111.11989 * 34.36773 * 8 6 5 36 36 H 1.09003 * 110.30978 * 82.49450 * 9 8 6 37 37 H 1.08998 * 110.31213 * 204.66435 * 9 8 6 38 38 H 1.09004 * 109.83578 * 238.81551 * 11 10 9 39 39 H 1.09005 * 109.90080 * 117.89139 * 11 10 9 40 40 H 1.09000 * 109.47717 * 185.55224 * 16 15 14 41 41 H 1.09001 * 109.47039 * 305.55749 * 16 15 14 42 42 H 0.97002 * 119.99737 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.47227 * 283.58264 * 25 15 14 44 44 H 1.08997 * 109.47322 * 43.58760 * 25 15 14 45 45 H 1.08997 * 109.46783 * 187.56529 * 26 25 15 46 46 H 1.09002 * 109.46727 * 307.57011 * 26 25 15 47 47 H 1.09001 * 109.46971 * 184.90483 * 28 27 26 48 48 H 1.08999 * 109.46785 * 304.90119 * 28 27 26 49 49 H 1.09001 * 109.47152 * 64.90296 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9721 1.3444 1.1485 5 6 4.2288 0.8110 1.2255 6 6 4.9499 0.0629 0.1340 7 1 4.3065 -0.0652 -0.7365 8 6 6.2679 0.7869 -0.2547 9 6 7.1221 -0.4045 -0.7565 10 8 6.7705 -1.5042 0.0989 11 6 5.4637 -1.2990 0.6483 12 7 4.6893 1.0741 2.4155 13 7 3.8137 1.7274 3.0925 14 6 2.7389 1.9183 2.3643 15 7 1.5868 2.5823 2.7544 16 6 0.5023 1.6329 3.0380 17 6 0.8687 0.7950 4.2358 18 1 1.8347 0.9150 4.7037 19 6 -0.0293 -0.1249 4.7344 20 7 -1.1690 -0.3349 4.1127 21 14 0.3731 -1.0729 6.2929 22 1 1.6494 -0.5707 6.8622 23 1 -0.7182 -0.8848 7.2823 24 1 0.5079 -2.5167 5.9731 25 6 1.8448 3.4482 3.9127 26 6 0.7013 4.4538 4.0626 27 8 -0.4946 3.7638 4.4313 28 6 -1.6516 4.6000 4.4961 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3570 2.1325 0.0672 33 1 2.6387 1.3926 -0.9216 34 1 6.0980 1.5114 -1.0510 35 1 6.7263 1.2608 0.6133 36 1 6.8751 -0.6374 -1.7923 37 1 8.1835 -0.1752 -0.6623 38 1 5.5178 -1.2867 1.7369 39 1 4.7943 -2.0945 0.3205 40 1 -0.4162 2.1818 3.2459 41 1 0.3511 0.9855 2.1742 42 1 -1.8009 -0.9818 4.4637 43 1 1.9130 2.8388 4.8139 44 1 2.7824 3.9837 3.7644 45 1 0.9548 5.1797 4.8351 46 1 0.5454 4.9704 3.1155 47 1 -2.4979 4.0211 4.8658 48 1 -1.4595 5.4342 5.1708 49 1 -1.8797 4.9824 3.5012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809884902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:05 Heat of formation + Delta-G solvation = 9.661223 kcal Electronic energy + Delta-G solvation = -31223.872000 eV Core-core repulsion = 27188.244392 eV Total energy + Delta-G solvation = -4035.627608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.88829 -40.28287 -39.39281 -37.67202 -37.04182 -34.61928 -34.11796 -33.47713 -31.18224 -30.63746 -29.58140 -28.06638 -27.61579 -26.91226 -24.91311 -24.19570 -23.41347 -23.07625 -21.71560 -21.08759 -20.56055 -18.83340 -18.20274 -17.78667 -17.42750 -17.20994 -17.03016 -16.81347 -16.61595 -16.09809 -15.87965 -15.79979 -15.55104 -15.16222 -14.65817 -14.56831 -14.40936 -14.24515 -13.58867 -13.36613 -13.20290 -13.17632 -12.97248 -12.75015 -12.67322 -12.61986 -12.50943 -12.49056 -12.38810 -12.28147 -12.14394 -11.95132 -11.86713 -11.64569 -11.22137 -10.94258 -10.62728 -10.54351 -10.39102 -10.26258 -10.16758 -9.12615 -8.13438 -6.18474 0.79745 1.12902 1.27798 1.31515 1.43096 1.72576 1.94397 2.39441 2.81632 3.05075 3.16210 3.19303 3.35330 3.56421 3.61596 3.80870 3.95395 3.99849 4.15106 4.17945 4.19994 4.33452 4.34052 4.38725 4.50865 4.56299 4.57894 4.63093 4.67726 4.73231 4.79479 4.89033 4.91894 4.94202 4.94981 4.96796 5.12038 5.16395 5.21959 5.35600 5.56242 5.61283 5.71277 5.79760 5.86174 5.92935 6.00206 6.20378 6.49135 6.58495 6.91912 7.45709 7.90686 8.92103 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.004258 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.424523 B = 6574.963186 C = 7208.870655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.198 4.198 3 C 0.141 3.859 4 N -0.468 5.468 5 C 0.178 3.822 6 C -0.024 4.024 7 H 0.131 0.869 8 C -0.136 4.136 9 C 0.051 3.949 10 O -0.401 6.401 11 C 0.067 3.933 12 N -0.320 5.320 13 N -0.368 5.368 14 C 0.390 3.610 15 N -0.454 5.454 16 C 0.198 3.802 17 C -0.534 4.534 18 H 0.038 0.962 19 C 0.033 3.967 20 N -0.908 5.908 21 Si 0.927 3.073 22 H -0.286 1.286 23 H -0.274 1.274 24 H -0.284 1.284 25 C 0.076 3.924 26 C 0.075 3.925 27 O -0.396 6.396 28 C 0.029 3.971 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.260 0.740 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 6.898 -14.773 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.217 4.217 3 C 0.020 3.980 4 N -0.161 5.161 5 C -0.091 4.091 6 C -0.045 4.045 7 H 0.149 0.851 8 C -0.175 4.175 9 C -0.025 4.025 10 O -0.321 6.321 11 C -0.010 4.010 12 N -0.159 5.159 13 N -0.212 5.212 14 C 0.032 3.968 15 N -0.178 5.178 16 C 0.074 3.926 17 C -0.574 4.574 18 H 0.056 0.944 19 C -0.167 4.167 20 N -0.548 5.548 21 Si 0.755 3.245 22 H -0.211 1.211 23 H -0.199 1.199 24 H -0.210 1.210 25 C -0.052 4.052 26 C -0.001 4.001 27 O -0.316 6.316 28 C -0.067 4.067 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.322 6.816 -13.882 16.708 hybrid contribution -1.020 -0.897 1.106 1.752 sum 5.302 5.919 -12.776 15.046 Atomic orbital electron populations 1.23950 0.95755 1.02679 0.94899 1.22952 0.96421 0.97761 1.04566 1.21164 0.92452 0.97629 0.86763 1.46291 1.14065 1.43289 1.12452 1.24582 0.84376 1.02521 0.97646 1.21184 0.97005 0.93202 0.93126 0.85080 1.23328 0.92469 0.98961 1.02712 1.23624 1.00451 0.83783 0.94645 1.88399 1.33085 1.45350 1.65253 1.23018 0.84473 0.95469 0.98073 1.73713 1.24770 1.14583 1.02866 1.74566 1.01911 1.20076 1.24635 1.22773 0.94729 0.95540 0.83728 1.59498 1.02048 1.20180 1.36081 1.20042 0.88685 0.89055 0.94860 1.21775 1.00287 1.20482 1.14835 0.94418 1.25269 0.95176 0.97530 0.98731 1.69984 1.09259 1.35578 1.39979 0.85987 0.77737 0.78745 0.82011 1.21148 1.19918 1.20983 1.21965 0.97501 0.94139 0.91600 1.22508 0.84506 0.93327 0.99795 1.88249 1.17299 1.35791 1.90234 1.22783 0.88184 0.95065 1.00714 0.87885 0.87974 0.87136 0.87999 0.84724 0.86639 0.91415 0.89219 0.88235 0.93218 0.89803 0.91810 0.94865 0.93056 0.94239 0.89685 0.90871 0.91679 0.90781 0.92715 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 12.62 67.78 0.86 -3.05 16 2 C -0.20 -5.52 9.16 25.65 0.24 -5.28 16 3 C 0.14 3.63 5.90 85.63 0.51 4.13 16 4 N -0.47 -16.23 2.79 -518.90 -1.45 -17.67 16 5 C 0.18 6.04 6.64 137.64 0.91 6.95 16 6 C -0.02 -0.57 3.39 -10.28 -0.03 -0.60 16 7 H 0.13 2.20 7.26 -2.39 -0.02 2.18 16 8 C -0.14 -2.58 6.60 32.05 0.21 -2.37 16 9 C 0.05 0.86 7.78 72.65 0.57 1.43 16 10 O -0.40 -10.33 11.36 -148.98 -1.69 -12.02 16 11 C 0.07 1.81 7.39 72.45 0.54 2.35 16 12 N -0.32 -13.73 11.82 -49.54 -0.59 -14.31 16 13 N -0.37 -17.36 11.14 -58.00 -0.65 -18.01 16 14 C 0.39 16.68 5.97 260.11 1.55 18.23 16 15 N -0.45 -19.18 4.66 -710.33 -3.31 -22.48 16 16 C 0.20 9.71 4.67 85.56 0.40 10.11 16 17 C -0.53 -30.21 7.58 25.60 0.19 -30.01 16 18 H 0.04 2.31 6.34 -2.91 -0.02 2.29 16 19 C 0.03 1.87 5.46 84.66 0.46 2.34 16 20 N -0.91 -52.03 13.29 21.45 0.29 -51.75 16 21 Si 0.93 46.88 29.54 68.60 2.03 48.91 16 22 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 23 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 25 C 0.08 3.04 4.82 86.31 0.42 3.45 16 26 C 0.08 2.48 6.22 71.99 0.45 2.93 16 27 O -0.40 -15.48 7.76 -148.98 -1.16 -16.63 16 28 C 0.03 0.83 11.01 113.37 1.25 2.08 16 29 H 0.10 2.91 7.84 -2.91 -0.02 2.89 16 30 H 0.10 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.11 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.10 2.68 7.74 -2.38 -0.02 2.66 16 33 H 0.14 2.23 7.61 -2.39 -0.02 2.22 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.65 8.00 -2.39 -0.02 1.63 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.69 7.55 -2.38 -0.02 1.67 16 39 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.06 3.35 5.50 -2.39 -0.01 3.33 16 41 H 0.03 1.65 5.06 -2.39 -0.01 1.64 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.04 1.90 6.11 -2.39 -0.01 1.89 16 44 H 0.08 3.17 7.81 -2.39 -0.02 3.15 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.12 393.43 2.92 -72.20 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.94 Total: 19.10 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 8.51 Total: 12.67 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -5.70 Total: -124.23 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -2.85 Total: -28.65 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.12 2.92 -72.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809884902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.863 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds