Wall clock time and date at job start Tue Mar 31 2020 21:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47350 * 2 1 4 4 N 1.46507 * 109.46785 * 120.00098 * 2 1 3 5 5 C 1.34775 * 119.99617 * 274.99419 * 4 2 1 6 6 O 1.21588 * 120.00238 * 5.09078 * 5 4 2 7 7 N 1.34776 * 119.99922 * 185.08250 * 5 4 2 8 8 C 1.46965 * 120.59623 * 185.13821 * 7 5 4 9 9 C 1.53370 * 108.77797 * 235.29470 * 8 7 5 10 10 H 1.08993 * 109.61098 * 70.23238 * 9 8 7 11 11 C 1.53005 * 109.60786 * 190.74574 * 9 8 7 12 12 N 1.46968 * 108.63082 * 310.48570 * 9 8 7 13 13 C 1.36935 * 120.59165 * 235.24823 * 12 9 8 14 14 H 1.08001 * 120.00442 * 51.49854 * 13 12 9 15 15 C 1.38822 * 119.99939 * 231.49515 * 13 12 9 16 16 N 1.31620 * 119.99812 * 204.91226 * 15 13 12 17 17 Si 1.86797 * 119.99828 * 24.91454 * 15 13 12 18 18 H 1.48494 * 109.47451 * 95.33181 * 17 15 13 19 19 H 1.48500 * 109.46906 * 215.33600 * 17 15 13 20 20 H 1.48498 * 109.47097 * 335.33041 * 17 15 13 21 21 C 1.46960 * 118.81237 * 55.23314 * 12 9 8 22 22 H 1.08995 * 109.61324 * 64.68238 * 21 12 9 23 23 C 1.52993 * 109.60857 * 185.02516 * 21 12 9 24 24 C 1.47294 * 120.81473 * 5.29703 * 7 5 4 25 25 C 1.50700 * 109.46970 * 239.99514 * 2 1 3 26 26 C 1.35352 * 126.74737 * 84.71779 * 25 2 1 27 27 N 1.35316 * 106.17473 * 179.84787 * 26 25 2 28 28 C 1.46498 * 125.87336 * 180.18274 * 27 26 25 29 29 N 1.28724 * 108.26076 * 0.41312 * 27 26 25 30 30 N 1.28634 * 110.17802 * 359.74109 * 29 27 26 31 31 H 1.09001 * 109.47410 * 300.00090 * 1 2 3 32 32 H 1.08998 * 109.46918 * 60.00521 * 1 2 3 33 33 H 1.09007 * 109.47176 * 180.02562 * 1 2 3 34 34 H 0.97000 * 120.00218 * 95.00218 * 4 2 1 35 35 H 1.09003 * 109.61482 * 115.45847 * 8 7 5 36 36 H 1.09001 * 109.60731 * 355.12296 * 8 7 5 37 37 H 1.08997 * 109.47119 * 59.99840 * 11 9 8 38 38 H 1.09004 * 109.46642 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47138 * 299.99690 * 11 9 8 40 40 H 0.97004 * 119.99638 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47708 * 51.02856 * 23 21 12 42 42 H 1.09010 * 109.47178 * 171.02320 * 23 21 12 43 43 H 1.08995 * 109.47575 * 291.02601 * 23 21 12 44 44 H 1.09009 * 109.54452 * 4.96828 * 24 7 5 45 45 H 1.08995 * 109.72166 * 244.60129 * 24 7 5 46 46 H 1.07995 * 126.91485 * 359.97438 * 26 25 2 47 47 H 1.08996 * 109.47249 * 270.29953 * 28 27 26 48 48 H 1.09006 * 109.46445 * 30.29782 * 28 27 26 49 49 H 1.09001 * 109.47422 * 150.29371 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.7716 1.1355 2.4363 7 7 2.6918 -0.6248 3.4304 8 6 2.7365 0.0562 4.7319 9 6 4.1893 0.0891 5.2223 10 1 4.7683 0.7758 4.6050 11 6 4.2284 0.5475 6.6816 12 7 4.7518 -1.2644 5.1153 13 6 5.3041 -1.8780 6.2078 14 1 4.7493 -1.9359 7.1326 15 6 6.5771 -2.4257 6.1266 16 7 6.9257 -3.4035 6.9359 17 14 7.7953 -1.7750 4.8689 18 1 8.6673 -0.7555 5.5057 19 1 8.6300 -2.8942 4.3632 20 1 7.0570 -1.1579 3.7378 21 6 4.7105 -1.9477 3.8148 22 1 5.3291 -1.4077 3.0980 23 6 5.2328 -3.3774 3.9693 24 6 3.2577 -1.9806 3.3245 25 6 2.0323 -0.7105 -1.2304 26 6 2.2081 -0.1737 -2.4604 27 7 2.6749 -1.1729 -3.2446 28 6 3.0163 -1.0615 -4.6648 29 7 2.7627 -2.2395 -2.5292 30 7 2.3868 -1.9971 -1.3232 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 1.1527 35 1 2.1203 -0.4854 5.4496 36 1 2.3634 1.0748 4.6248 37 1 3.6545 -0.1463 7.2958 38 1 5.2617 0.5696 7.0278 39 1 3.7969 1.5453 6.7607 40 1 7.8153 -3.7859 6.8794 41 1 4.7136 -3.8670 4.7932 42 1 5.0544 -3.9310 3.0473 43 1 6.3025 -3.3531 4.1772 44 1 3.2299 -2.3072 2.2848 45 1 2.6793 -2.6696 3.9399 46 1 2.0165 0.8471 -2.7561 47 1 2.1358 -1.2815 -5.2685 48 1 3.3590 -0.0488 -4.8776 49 1 3.8081 -1.7710 -4.9050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925958382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:57 Heat of formation + Delta-G solvation = 119.314199 kcal Electronic energy + Delta-G solvation = -30627.843500 eV Core-core repulsion = 26629.263553 eV Total energy + Delta-G solvation = -3998.579947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.56290 -40.03343 -37.78859 -36.03575 -34.51365 -34.14073 -33.15627 -31.71131 -31.38925 -29.57734 -28.31406 -27.93623 -26.20871 -25.81122 -24.29102 -23.24914 -22.40474 -21.14208 -20.54117 -19.89772 -19.21212 -18.20259 -17.35455 -16.93333 -16.32671 -16.12681 -15.25615 -15.03486 -14.89264 -14.82000 -14.61778 -14.26733 -13.90978 -13.72530 -13.52609 -13.41333 -13.19395 -12.67473 -12.50356 -12.30468 -12.19674 -12.09783 -12.05229 -11.73115 -11.40555 -11.30045 -11.22865 -11.13183 -10.81244 -10.49350 -10.38599 -10.33436 -10.17126 -9.99780 -9.92045 -9.72670 -9.53993 -9.42066 -8.96673 -8.45584 -8.02774 -6.44790 -6.03685 -3.54445 1.26277 2.00110 2.22571 2.96356 3.37247 3.48491 3.52929 3.56523 3.89133 4.11913 4.29389 4.46780 4.48044 4.52681 4.77732 4.85716 4.90950 5.06798 5.20663 5.26962 5.37882 5.47761 5.63338 5.65314 5.76952 5.78828 5.90444 5.99787 6.02847 6.10030 6.15338 6.20629 6.30743 6.34875 6.40561 6.46195 6.54899 6.66839 6.68454 6.89364 6.96473 7.02015 7.21147 7.37033 7.41341 8.08722 8.20409 8.30510 8.52591 8.92512 9.03701 9.70229 10.25365 11.09475 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.003441 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.877870 B = 8135.236008 C = 9413.961085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.253 3.747 3 H 0.102 0.898 4 N -0.742 5.742 5 C 0.709 3.291 6 O -0.603 6.603 7 N -0.617 5.617 8 C 0.119 3.881 9 C 0.152 3.848 10 H 0.029 0.971 11 C -0.128 4.128 12 N -0.595 5.595 13 C -0.275 4.275 14 H 0.073 0.927 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.860 3.140 18 H -0.295 1.295 19 H -0.297 1.297 20 H -0.259 1.259 21 C 0.154 3.846 22 H 0.034 0.966 23 C -0.134 4.134 24 C 0.100 3.900 25 C -0.025 4.025 26 C -0.040 4.040 27 N -0.295 5.295 28 C 0.082 3.918 29 N -0.081 5.081 30 N -0.259 5.259 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.405 0.595 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.193 0.807 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 6.258 -21.557 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.145 3.855 3 H 0.119 0.881 4 N -0.400 5.400 5 C 0.411 3.589 6 O -0.483 6.483 7 N -0.352 5.352 8 C -0.006 4.006 9 C 0.045 3.955 10 H 0.047 0.953 11 C -0.186 4.186 12 N -0.320 5.320 13 C -0.403 4.403 14 H 0.091 0.909 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.688 3.312 18 H -0.223 1.223 19 H -0.224 1.224 20 H -0.184 1.184 21 C 0.048 3.952 22 H 0.052 0.948 23 C -0.191 4.191 24 C -0.025 4.025 25 C -0.164 4.164 26 C -0.192 4.192 27 N -0.088 5.088 28 C -0.060 4.060 29 N -0.061 5.061 30 N -0.126 5.126 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.210 0.790 47 H 0.110 0.890 48 H 0.118 0.882 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.386 5.453 -21.439 24.438 hybrid contribution 0.872 0.882 -1.090 1.651 sum -9.514 6.336 -22.529 25.262 Atomic orbital electron populations 1.22188 0.94064 1.02560 1.02776 1.18808 0.93652 0.95002 0.78082 0.88054 1.45193 1.72113 1.14339 1.08380 1.15778 0.78632 0.84345 0.80176 1.90844 1.57532 1.16273 1.83696 1.47255 1.60964 1.17738 1.09240 1.22128 0.99105 0.97329 0.81998 1.20989 0.91050 0.87893 0.95533 0.95300 1.21664 1.02822 0.98473 0.95677 1.44373 1.69589 1.11462 1.06622 1.18410 0.96470 1.33190 0.92224 0.90934 1.25823 0.97000 0.95941 0.95424 1.69931 1.20337 1.22678 1.39839 0.87290 0.81922 0.78659 0.83288 1.22285 1.22370 1.18420 1.21089 0.91591 0.93776 0.88776 0.94806 1.21887 1.01877 0.94991 1.00364 1.22389 0.97361 0.82720 1.00018 1.22122 1.05947 0.92199 0.96105 1.23260 1.07226 0.97131 0.91533 1.47267 1.42279 1.07507 1.11771 1.22281 1.03673 1.05490 0.74520 1.78343 1.19676 1.09919 0.98168 1.74995 1.13827 1.14246 1.09494 0.90768 0.91864 0.92277 0.75755 0.91956 0.89871 0.92276 0.91570 0.94107 0.92719 0.90280 0.94417 0.92522 0.91642 0.91115 0.78954 0.89015 0.88218 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.47 37.16 0.35 -1.31 16 2 C 0.25 3.09 3.02 -69.08 -0.21 2.88 16 3 H 0.10 1.26 7.65 -51.93 -0.40 0.86 16 4 N -0.74 -11.06 4.94 -59.81 -0.30 -11.35 16 5 C 0.71 12.68 8.26 -86.92 -0.72 11.97 16 6 O -0.60 -12.06 15.42 5.29 0.08 -11.98 16 7 N -0.62 -11.34 2.96 -177.94 -0.53 -11.87 16 8 C 0.12 2.21 5.90 -3.60 -0.02 2.19 16 9 C 0.15 3.13 3.65 -67.48 -0.25 2.88 16 10 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.13 -2.43 8.17 37.16 0.30 -2.13 16 12 N -0.59 -13.73 2.23 -157.02 -0.35 -14.08 16 13 C -0.27 -7.21 7.17 -15.06 -0.11 -7.32 16 14 H 0.07 2.07 7.21 -52.49 -0.38 1.69 16 15 C 0.06 1.66 3.81 -17.43 -0.07 1.60 16 16 N -0.89 -25.76 13.97 55.49 0.78 -24.99 16 17 Si 0.86 21.81 25.01 -169.99 -4.25 17.56 16 18 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.26 -6.49 5.18 56.52 0.29 -6.19 16 21 C 0.15 3.29 2.45 -67.49 -0.17 3.12 16 22 H 0.03 0.78 6.64 -51.93 -0.34 0.44 16 23 C -0.13 -2.86 7.67 37.15 0.28 -2.58 16 24 C 0.10 1.79 5.84 -3.41 -0.02 1.77 16 25 C -0.02 -0.29 6.18 -82.78 -0.51 -0.80 16 26 C -0.04 -0.33 11.55 -17.04 -0.20 -0.53 16 27 N -0.29 -2.50 3.74 -68.06 -0.25 -2.76 16 28 C 0.08 0.25 11.39 59.85 0.68 0.93 16 29 N -0.08 -1.02 13.17 60.35 0.79 -0.22 16 30 N -0.26 -3.58 11.72 33.29 0.39 -3.19 16 31 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.40 5.97 5.64 -40.82 -0.23 5.74 16 35 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 36 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 37 H 0.06 1.14 7.40 -51.93 -0.38 0.76 16 38 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 1.81 7.49 -51.93 -0.39 1.43 16 42 H 0.04 0.67 8.13 -51.92 -0.42 0.25 16 43 H 0.06 1.34 3.36 -51.93 -0.17 1.17 16 44 H 0.07 1.04 5.73 -51.92 -0.30 0.74 16 45 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 46 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 48 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 49 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -34.37 378.77 -6.24 -40.61 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.67 Total: 3.89 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -0.64 Total: 12.67 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: 0.53 Total: -68.46 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.25 Total: 17.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.37 -6.24 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925958382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.923 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds