Wall clock time and date at job start Tue Mar 31 2020 21:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47350 * 2 1 4 4 N 1.46507 * 109.46785 * 120.00098 * 2 1 3 5 5 C 1.34775 * 119.99617 * 274.99419 * 4 2 1 6 6 O 1.21588 * 120.00238 * 5.09078 * 5 4 2 7 7 N 1.34776 * 119.99922 * 185.08250 * 5 4 2 8 8 C 1.46965 * 120.59623 * 185.13821 * 7 5 4 9 9 C 1.53370 * 108.77797 * 235.29470 * 8 7 5 10 10 H 1.08993 * 109.61098 * 70.23238 * 9 8 7 11 11 C 1.53005 * 109.60786 * 190.74574 * 9 8 7 12 12 N 1.46968 * 108.63082 * 310.48570 * 9 8 7 13 13 C 1.36935 * 120.59165 * 235.24823 * 12 9 8 14 14 H 1.08001 * 120.00442 * 51.49854 * 13 12 9 15 15 C 1.38822 * 119.99939 * 231.49515 * 13 12 9 16 16 N 1.31620 * 119.99812 * 204.91226 * 15 13 12 17 17 Si 1.86797 * 119.99828 * 24.91454 * 15 13 12 18 18 H 1.48494 * 109.47451 * 95.33181 * 17 15 13 19 19 H 1.48500 * 109.46906 * 215.33600 * 17 15 13 20 20 H 1.48498 * 109.47097 * 335.33041 * 17 15 13 21 21 C 1.46960 * 118.81237 * 55.23314 * 12 9 8 22 22 H 1.08995 * 109.61324 * 64.68238 * 21 12 9 23 23 C 1.52993 * 109.60857 * 185.02516 * 21 12 9 24 24 C 1.47294 * 120.81473 * 5.29703 * 7 5 4 25 25 C 1.50700 * 109.46970 * 239.99514 * 2 1 3 26 26 C 1.35352 * 126.74737 * 84.71779 * 25 2 1 27 27 N 1.35316 * 106.17473 * 179.84787 * 26 25 2 28 28 C 1.46498 * 125.87336 * 180.18274 * 27 26 25 29 29 N 1.28724 * 108.26076 * 0.41312 * 27 26 25 30 30 N 1.28634 * 110.17802 * 359.74109 * 29 27 26 31 31 H 1.09001 * 109.47410 * 300.00090 * 1 2 3 32 32 H 1.08998 * 109.46918 * 60.00521 * 1 2 3 33 33 H 1.09007 * 109.47176 * 180.02562 * 1 2 3 34 34 H 0.97000 * 120.00218 * 95.00218 * 4 2 1 35 35 H 1.09003 * 109.61482 * 115.45847 * 8 7 5 36 36 H 1.09001 * 109.60731 * 355.12296 * 8 7 5 37 37 H 1.08997 * 109.47119 * 59.99840 * 11 9 8 38 38 H 1.09004 * 109.46642 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47138 * 299.99690 * 11 9 8 40 40 H 0.97004 * 119.99638 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47708 * 51.02856 * 23 21 12 42 42 H 1.09010 * 109.47178 * 171.02320 * 23 21 12 43 43 H 1.08995 * 109.47575 * 291.02601 * 23 21 12 44 44 H 1.09009 * 109.54452 * 4.96828 * 24 7 5 45 45 H 1.08995 * 109.72166 * 244.60129 * 24 7 5 46 46 H 1.07995 * 126.91485 * 359.97438 * 26 25 2 47 47 H 1.08996 * 109.47249 * 270.29953 * 28 27 26 48 48 H 1.09006 * 109.46445 * 30.29782 * 28 27 26 49 49 H 1.09001 * 109.47422 * 150.29371 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.7716 1.1355 2.4363 7 7 2.6918 -0.6248 3.4304 8 6 2.7365 0.0562 4.7319 9 6 4.1893 0.0891 5.2223 10 1 4.7683 0.7758 4.6050 11 6 4.2284 0.5475 6.6816 12 7 4.7518 -1.2644 5.1153 13 6 5.3041 -1.8780 6.2078 14 1 4.7493 -1.9359 7.1326 15 6 6.5771 -2.4257 6.1266 16 7 6.9257 -3.4035 6.9359 17 14 7.7953 -1.7750 4.8689 18 1 8.6673 -0.7555 5.5057 19 1 8.6300 -2.8942 4.3632 20 1 7.0570 -1.1579 3.7378 21 6 4.7105 -1.9477 3.8148 22 1 5.3291 -1.4077 3.0980 23 6 5.2328 -3.3774 3.9693 24 6 3.2577 -1.9806 3.3245 25 6 2.0323 -0.7105 -1.2304 26 6 2.2081 -0.1737 -2.4604 27 7 2.6749 -1.1729 -3.2446 28 6 3.0163 -1.0615 -4.6648 29 7 2.7627 -2.2395 -2.5292 30 7 2.3868 -1.9971 -1.3232 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 1.1527 35 1 2.1203 -0.4854 5.4496 36 1 2.3634 1.0748 4.6248 37 1 3.6545 -0.1463 7.2958 38 1 5.2617 0.5696 7.0278 39 1 3.7969 1.5453 6.7607 40 1 7.8153 -3.7859 6.8794 41 1 4.7136 -3.8670 4.7932 42 1 5.0544 -3.9310 3.0473 43 1 6.3025 -3.3531 4.1772 44 1 3.2299 -2.3072 2.2848 45 1 2.6793 -2.6696 3.9399 46 1 2.0165 0.8471 -2.7561 47 1 2.1358 -1.2815 -5.2685 48 1 3.3590 -0.0488 -4.8776 49 1 3.8081 -1.7710 -4.9050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925958382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:56 Heat of formation + Delta-G solvation = 94.519340 kcal Electronic energy + Delta-G solvation = -30628.918686 eV Core-core repulsion = 26629.263553 eV Total energy + Delta-G solvation = -3999.655133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.28083 -41.44572 -39.37001 -37.10099 -35.79923 -35.28329 -34.73133 -33.50379 -32.59284 -30.49018 -29.68524 -28.76000 -27.76884 -27.42589 -25.50503 -24.69231 -23.09395 -22.31277 -22.05085 -21.39597 -20.71760 -19.47956 -18.38345 -17.95338 -17.57073 -17.43737 -16.89948 -16.62644 -16.37859 -15.94809 -15.75864 -15.35694 -15.25148 -14.90585 -14.67389 -14.56831 -14.18950 -14.07822 -13.88156 -13.81984 -13.56107 -13.44238 -13.16893 -12.95009 -12.86083 -12.79815 -12.53277 -12.29970 -12.19197 -12.11892 -11.95221 -11.92972 -11.80463 -11.66171 -11.48976 -11.10923 -11.03216 -10.51636 -10.40667 -10.08431 -9.58870 -8.35415 -8.17531 -5.65165 0.61577 1.31464 1.36693 1.40590 1.50045 1.53661 1.72024 2.14316 2.43348 2.86416 3.03104 3.19443 3.32488 3.79749 3.93663 4.01845 4.13474 4.19165 4.22358 4.28574 4.34639 4.36190 4.39080 4.40634 4.52570 4.63301 4.65397 4.70136 4.75025 4.78873 4.80246 4.88218 4.93812 4.97975 5.02366 5.10125 5.22746 5.29917 5.34681 5.40504 5.55566 5.60693 5.63876 5.66434 5.97439 6.05996 6.38568 6.94309 7.09306 7.44207 7.55990 7.64730 8.22850 8.99167 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.003441 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.877870 B = 8135.236008 C = 9413.961085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.252 3.748 3 H 0.101 0.899 4 N -0.734 5.734 5 C 0.709 3.291 6 O -0.625 6.625 7 N -0.624 5.624 8 C 0.129 3.871 9 C 0.148 3.852 10 H 0.019 0.981 11 C -0.120 4.120 12 N -0.605 5.605 13 C -0.252 4.252 14 H 0.044 0.956 15 C 0.026 3.974 16 N -0.929 5.929 17 Si 0.908 3.092 18 H -0.305 1.305 19 H -0.298 1.298 20 H -0.254 1.254 21 C 0.151 3.849 22 H 0.022 0.978 23 C -0.127 4.127 24 C 0.113 3.887 25 C -0.050 4.050 26 C -0.018 4.018 27 N -0.286 5.286 28 C 0.069 3.931 29 N -0.119 5.119 30 N -0.298 5.298 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.405 0.595 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.238 0.762 47 H 0.111 0.889 48 H 0.131 0.869 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 7.791 -24.739 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.145 3.855 3 H 0.119 0.881 4 N -0.392 5.392 5 C 0.410 3.590 6 O -0.506 6.506 7 N -0.359 5.359 8 C 0.004 3.996 9 C 0.042 3.958 10 H 0.037 0.963 11 C -0.178 4.178 12 N -0.332 5.332 13 C -0.382 4.382 14 H 0.062 0.938 15 C -0.174 4.174 16 N -0.570 5.570 17 Si 0.737 3.263 18 H -0.234 1.234 19 H -0.225 1.225 20 H -0.178 1.178 21 C 0.044 3.956 22 H 0.040 0.960 23 C -0.185 4.185 24 C -0.012 4.012 25 C -0.190 4.190 26 C -0.170 4.170 27 N -0.079 5.079 28 C -0.070 4.070 29 N -0.098 5.098 30 N -0.164 5.164 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.254 0.746 47 H 0.130 0.870 48 H 0.150 0.850 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.628 6.973 -24.695 28.172 hybrid contribution 1.189 0.475 -0.214 1.298 sum -10.439 7.448 -24.908 28.016 Atomic orbital electron populations 1.22103 0.92914 1.02276 1.03356 1.18960 0.94506 0.94720 0.77357 0.88118 1.45239 1.71274 1.14317 1.08332 1.15856 0.78426 0.84117 0.80580 1.90824 1.58476 1.17228 1.84114 1.47286 1.61340 1.17819 1.09429 1.21936 0.97373 0.97872 0.82369 1.21114 0.92052 0.86234 0.96415 0.96288 1.21581 1.01575 1.00260 0.94408 1.44531 1.69544 1.12669 1.06428 1.18190 0.95857 1.31915 0.92197 0.93800 1.26153 0.98130 0.96290 0.96782 1.70004 1.20656 1.24359 1.42026 0.86527 0.80290 0.77647 0.81835 1.23390 1.22527 1.17837 1.21133 0.93661 0.93202 0.87555 0.95992 1.21791 0.99869 0.95446 1.01367 1.22193 0.94806 0.82822 1.01339 1.22139 1.07733 0.92045 0.97043 1.23883 1.04523 0.98472 0.90161 1.47695 1.40487 1.06558 1.13209 1.22769 1.04795 1.07599 0.71821 1.78256 1.21449 1.11734 0.98344 1.74911 1.15151 1.15688 1.10630 0.92515 0.88869 0.92934 0.75684 0.91567 0.89250 0.93013 0.93733 0.90666 0.92870 0.92295 0.90853 0.94902 0.89299 0.90785 0.74561 0.87021 0.85039 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.47 71.98 0.68 -2.15 16 2 C 0.25 5.65 3.02 44.24 0.13 5.78 16 3 H 0.10 2.27 7.65 -2.39 -0.02 2.25 16 4 N -0.73 -20.78 4.94 -461.40 -2.28 -23.06 16 5 C 0.71 24.29 8.26 179.06 1.48 25.77 16 6 O -0.62 -24.04 15.42 -3.99 -0.06 -24.10 16 7 N -0.62 -22.05 2.96 -835.15 -2.47 -24.52 16 8 C 0.13 4.64 5.90 86.41 0.51 5.15 16 9 C 0.15 6.00 3.65 45.03 0.16 6.16 16 10 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 11 C -0.12 -4.50 8.17 71.98 0.59 -3.91 16 12 N -0.61 -27.89 2.23 -650.71 -1.45 -29.34 16 13 C -0.25 -13.46 7.17 84.04 0.60 -12.86 16 14 H 0.04 2.60 7.21 -2.91 -0.02 2.58 16 15 C 0.03 1.43 3.81 84.86 0.32 1.75 16 16 N -0.93 -55.18 13.97 21.65 0.30 -54.88 16 17 Si 0.91 45.76 25.01 68.60 1.72 47.48 16 18 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 19 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 20 H -0.25 -12.42 5.18 99.48 0.52 -11.90 16 21 C 0.15 6.29 2.45 45.03 0.11 6.40 16 22 H 0.02 1.00 6.64 -2.39 -0.02 0.98 16 23 C -0.13 -5.37 7.67 71.98 0.55 -4.82 16 24 C 0.11 3.89 5.84 86.35 0.50 4.39 16 25 C -0.05 -1.04 6.18 41.60 0.26 -0.78 16 26 C -0.02 -0.23 11.55 83.49 0.96 0.73 16 27 N -0.29 -4.03 3.74 -369.23 -1.38 -5.41 16 28 C 0.07 0.17 11.39 127.77 1.46 1.63 16 29 N -0.12 -2.80 13.17 37.02 0.49 -2.31 16 30 N -0.30 -7.89 11.72 -48.60 -0.57 -8.46 16 31 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.41 11.38 5.64 -92.71 -0.52 10.86 16 35 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 36 H 0.09 3.14 6.99 -2.39 -0.02 3.12 16 37 H 0.05 1.99 7.40 -2.39 -0.02 1.97 16 38 H 0.04 1.84 7.75 -2.39 -0.02 1.82 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.06 2.71 7.49 -2.39 -0.02 2.69 16 42 H 0.07 2.52 8.13 -2.38 -0.02 2.50 16 43 H 0.03 1.54 3.36 -2.39 -0.01 1.53 16 44 H 0.09 2.66 5.73 -2.38 -0.01 2.64 16 45 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 46 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 47 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.13 -0.48 8.14 -2.38 -0.02 -0.50 16 49 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -76.67 378.77 2.87 -73.81 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.25 Total: 17.56 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 8.33 Total: 33.24 kcal Atomic # 7 Polarization: -140.62 SS G_CDS: -7.36 Total: -147.98 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.72 Total: 47.48 kcal Total: -76.67 2.87 -73.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925958382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.328 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds