Wall clock time and date at job start Tue Mar 31 2020 19:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30889 * 125.89018 * 2 1 4 4 C 1.33656 * 109.76674 * 179.97438 * 3 2 1 5 5 N 1.39601 * 125.61065 * 179.97438 * 4 3 2 6 6 C 1.46954 * 111.00184 * 179.97438 * 5 4 3 7 7 C 1.53054 * 109.36530 * 183.18958 * 6 5 4 8 8 N 1.46956 * 109.36360 * 301.60067 * 7 6 5 9 9 C 1.46904 * 110.99933 * 183.19086 * 8 7 6 10 10 H 1.08991 * 109.47301 * 55.00023 * 9 8 7 11 11 C 1.52998 * 109.46743 * 294.99579 * 9 8 7 12 12 C 1.50701 * 109.46937 * 175.00010 * 9 8 7 13 13 O 1.21279 * 120.00488 * 4.93848 * 12 9 8 14 14 N 1.34776 * 119.99866 * 184.93914 * 12 9 8 15 15 C 1.46497 * 120.00019 * 5.35566 * 14 12 9 16 16 C 1.46495 * 119.99903 * 185.34835 * 14 12 9 17 17 C 1.50705 * 109.46944 * 90.00558 * 16 14 12 18 18 H 1.07993 * 119.99896 * 359.97438 * 17 16 14 19 19 C 1.37874 * 120.00064 * 179.97438 * 17 16 14 20 20 N 1.31523 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47322 * 60.00198 * 21 19 17 23 23 H 1.48505 * 109.47272 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47023 * 300.00007 * 21 19 17 25 25 C 1.46954 * 110.88196 * 59.31912 * 8 7 6 26 26 C 1.46956 * 110.99938 * 303.80196 * 5 4 3 27 27 N 1.31205 * 108.77981 * 0.23223 * 4 3 2 28 28 N 1.34336 * 125.89314 * 179.97438 * 2 1 3 29 29 H 0.96998 * 126.76673 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46866 * 89.99881 * 1 2 3 31 31 H 1.09007 * 109.46548 * 209.99678 * 1 2 3 32 32 H 1.08996 * 109.47083 * 329.99517 * 1 2 3 33 33 H 1.08998 * 109.48887 * 63.22384 * 6 5 4 34 34 H 1.09001 * 109.50661 * 303.17027 * 6 5 4 35 35 H 1.08995 * 109.48871 * 181.63357 * 7 6 5 36 36 H 1.08990 * 109.50566 * 61.57347 * 7 6 5 37 37 H 1.08995 * 109.47434 * 310.77873 * 11 9 8 38 38 H 1.09001 * 109.46668 * 70.77944 * 11 9 8 39 39 H 1.09001 * 109.47180 * 190.77482 * 11 9 8 40 40 H 1.08994 * 109.47687 * 95.99631 * 15 14 12 41 41 H 1.09001 * 109.47458 * 216.00059 * 15 14 12 42 42 H 1.09005 * 109.47166 * 336.00211 * 15 14 12 43 43 H 1.09006 * 109.47422 * 210.00090 * 16 14 12 44 44 H 1.08996 * 109.47679 * 330.00216 * 16 14 12 45 45 H 0.96996 * 120.00044 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.48887 * 60.64561 * 25 8 7 47 47 H 1.09004 * 109.48985 * 180.71002 * 25 8 7 48 48 H 1.09002 * 109.49038 * 296.77596 * 26 5 4 49 49 H 1.09004 * 109.49339 * 56.82063 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2744 1.0604 0.0000 4 6 3.5584 0.6892 0.0006 5 7 4.6544 1.5538 0.0002 6 6 5.9176 0.8028 0.0017 7 6 7.0905 1.7828 0.0816 8 7 7.0319 2.7070 -1.0595 9 6 8.1853 3.6168 -1.0598 10 1 9.1068 3.0352 -1.0373 11 6 8.1223 4.5206 0.1731 12 6 8.1564 4.4640 -2.3058 13 8 7.2172 4.3879 -3.0693 14 7 9.1743 5.3064 -2.5717 15 6 10.3618 5.3141 -1.7138 16 6 9.0933 6.2142 -3.7186 17 6 8.4634 7.5136 -3.2872 18 1 8.1540 7.6493 -2.2615 19 6 8.2821 8.5290 -4.2021 20 7 8.6594 8.3639 -5.4512 21 14 7.5007 10.1392 -3.6676 22 1 8.3267 10.7604 -2.6013 23 1 7.4186 11.0596 -4.8302 24 1 6.1348 9.8777 -3.1466 25 6 5.7687 3.4580 -1.0609 26 6 4.5955 2.4784 -1.1405 27 7 3.6192 -0.6214 -0.0041 28 7 2.2946 -1.0883 0.0005 29 1 2.0055 -2.0142 0.0012 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.9941 0.2181 -0.9150 34 1 5.9427 0.1345 0.8624 35 1 8.0292 1.2295 0.0535 36 1 7.0294 2.3485 1.0112 37 1 7.1266 4.9567 0.2533 38 1 8.3344 3.9324 1.0659 39 1 8.8610 5.3165 0.0783 40 1 11.1329 4.6826 -2.1549 41 1 10.7364 6.3335 -1.6208 42 1 10.0998 4.9319 -0.7272 43 1 10.0956 6.4060 -4.1017 44 1 8.4865 5.7583 -4.5008 45 1 8.5315 9.0781 -6.0949 46 1 5.6923 4.0427 -0.1442 47 1 5.7438 4.1261 -1.9218 48 1 4.6567 1.9131 -2.0704 49 1 3.6566 3.0315 -1.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931624581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:53 Heat of formation + Delta-G solvation = 97.254778 kcal Electronic energy + Delta-G solvation = -29944.014797 eV Core-core repulsion = 25944.478282 eV Total energy + Delta-G solvation = -3999.536516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33773 -40.10393 -38.47245 -35.86889 -34.82989 -32.87472 -32.64106 -32.37708 -30.93406 -30.46038 -28.18661 -27.59975 -26.44118 -25.76708 -24.01733 -23.61904 -22.26212 -21.53991 -20.81547 -19.46002 -18.45204 -18.09997 -16.69043 -16.50485 -16.29975 -15.98658 -15.75762 -15.03192 -14.85607 -14.65165 -14.53821 -14.25985 -14.06453 -13.96510 -13.73824 -13.34248 -13.23765 -13.02644 -12.63186 -12.38888 -12.23600 -12.09074 -12.00439 -11.82805 -11.55834 -11.34242 -11.13675 -11.05352 -10.96888 -10.77219 -10.64616 -10.63533 -10.51778 -10.16181 -10.09199 -9.87676 -9.61381 -8.72589 -8.54386 -8.41635 -8.04438 -7.58617 -6.02554 -4.07727 1.36748 2.33449 2.66338 3.22637 3.32795 3.37478 3.38348 3.46039 3.69279 4.15045 4.24663 4.41793 4.45976 4.74883 4.91787 4.96216 4.99637 5.13490 5.22428 5.22820 5.28850 5.31903 5.36091 5.39345 5.45648 5.49444 5.60038 5.66888 5.75128 5.84314 5.86830 5.92302 5.96681 6.03035 6.09446 6.22232 6.32805 6.42383 6.58917 6.85834 6.95326 7.05378 7.18612 7.24995 7.49496 7.58231 7.94203 7.96935 8.25183 8.46213 8.92028 9.14355 9.57500 11.05338 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002625 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.722980 B =10662.568656 C =11782.580722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.540 5.540 4 C 0.412 3.588 5 N -0.443 5.443 6 C 0.069 3.931 7 C 0.054 3.946 8 N -0.517 5.517 9 C 0.065 3.935 10 H 0.100 0.900 11 C -0.192 4.192 12 C 0.514 3.486 13 O -0.527 6.527 14 N -0.601 5.601 15 C 0.070 3.930 16 C 0.246 3.754 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.039 3.961 26 C 0.074 3.926 27 N -0.350 5.350 28 N -0.484 5.484 29 H 0.439 0.561 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.045 0.955 45 H 0.264 0.736 46 H 0.043 0.957 47 H 0.128 0.872 48 H 0.052 0.948 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -18.669 14.303 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 N -0.272 5.272 4 C 0.042 3.958 5 N -0.167 5.167 6 C -0.059 4.059 7 C -0.074 4.074 8 N -0.241 5.241 9 C -0.047 4.047 10 H 0.118 0.882 11 C -0.251 4.251 12 C 0.300 3.700 13 O -0.404 6.404 14 N -0.333 5.333 15 C -0.074 4.074 16 C 0.127 3.873 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.089 4.089 26 C -0.053 4.053 27 N -0.186 5.186 28 N -0.203 5.203 29 H 0.284 0.716 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.145 0.855 48 H 0.071 0.929 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.954 -18.562 13.668 24.729 hybrid contribution -0.577 0.352 0.510 0.847 sum -9.531 -18.210 14.178 24.969 Atomic orbital electron populations 1.20409 0.83571 1.05016 1.04676 1.24312 0.96551 0.82488 0.95145 1.70261 1.00574 1.29309 1.27100 1.22269 0.90313 0.87372 0.95812 1.59204 0.99108 1.15321 1.43075 1.22154 0.86155 0.95013 1.02583 1.22218 0.97695 0.94665 0.92838 1.62117 1.01909 1.18769 1.41292 1.21636 0.95173 0.93706 0.94186 0.88186 1.22616 1.04236 1.00892 0.97356 1.20028 0.83053 0.80283 0.86636 1.90548 1.33771 1.67051 1.49004 1.48084 1.16605 1.37992 1.30663 1.21932 0.88361 1.02724 0.94404 1.19272 0.97674 0.87158 0.83223 1.21385 1.40574 0.98528 0.96061 0.92566 1.24934 0.95545 0.98814 0.94776 1.69927 1.47291 1.33547 1.02553 0.86576 0.80015 0.82969 0.77962 1.20291 1.21198 1.20137 1.22720 0.86617 0.95596 1.03919 1.22286 1.00229 0.93546 0.89201 1.78265 0.96509 1.11172 1.32638 1.47665 1.03990 1.09726 1.58960 0.71598 0.88875 0.89852 0.88236 0.92375 0.89597 0.89724 0.93474 0.91298 0.91930 0.90103 0.93702 0.91024 0.91237 0.95108 0.93685 0.92668 0.93898 0.85461 0.92931 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.29 2.82 8.23 -155.73 -1.28 1.54 16 3 N -0.54 -7.41 10.96 -11.13 -0.12 -7.53 16 4 C 0.41 5.99 7.39 -321.17 -2.37 3.62 16 5 N -0.44 -6.40 4.80 -174.85 -0.84 -7.23 16 6 C 0.07 0.87 4.98 -3.77 -0.02 0.86 16 7 C 0.05 0.66 5.26 -3.77 -0.02 0.64 16 8 N -0.52 -7.89 4.52 -227.88 -1.03 -8.92 16 9 C 0.07 0.99 1.94 -68.86 -0.13 0.86 16 10 H 0.10 1.32 7.72 -51.93 -0.40 0.92 16 11 C -0.19 -2.57 7.93 37.16 0.29 -2.27 16 12 C 0.51 10.58 6.77 -10.99 -0.07 10.51 16 13 O -0.53 -12.95 13.26 5.56 0.07 -12.87 16 14 N -0.60 -12.62 2.85 -182.96 -0.52 -13.14 16 15 C 0.07 1.09 9.71 59.85 0.58 1.67 16 16 C 0.25 6.43 5.23 -5.19 -0.03 6.40 16 17 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.15 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.04 0.63 4.73 -3.77 -0.02 0.62 16 26 C 0.07 1.14 5.54 -3.77 -0.02 1.12 16 27 N -0.35 -4.64 11.83 29.99 0.35 -4.28 16 28 N -0.48 -4.46 7.43 32.62 0.24 -4.22 16 29 H 0.44 2.24 8.96 -182.34 -1.63 0.60 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.01 8.01 -51.93 -0.42 0.59 16 35 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 36 H 0.05 0.56 6.85 -51.93 -0.36 0.20 16 37 H 0.07 1.02 5.92 -51.93 -0.31 0.71 16 38 H 0.06 0.68 7.16 -51.93 -0.37 0.30 16 39 H 0.08 1.09 5.40 -51.93 -0.28 0.81 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 42 H 0.07 0.88 4.12 -51.93 -0.21 0.66 16 43 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 44 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.04 0.68 6.24 -51.93 -0.32 0.36 16 47 H 0.13 2.53 5.22 -51.93 -0.27 2.26 16 48 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.44 7.95 -51.93 -0.41 1.03 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -36.28 383.05 -12.20 -48.48 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.71 Total: 0.93 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -3.13 Total: 12.12 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.18 Total: -71.21 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.28 -12.20 -48.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.733 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds