Wall clock time and date at job start Tue Mar 31 2020 19:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30889 * 125.89018 * 2 1 4 4 C 1.33656 * 109.76674 * 179.97438 * 3 2 1 5 5 N 1.39601 * 125.61065 * 179.97438 * 4 3 2 6 6 C 1.46954 * 111.00184 * 179.97438 * 5 4 3 7 7 C 1.53054 * 109.36530 * 183.18958 * 6 5 4 8 8 N 1.46956 * 109.36360 * 301.60067 * 7 6 5 9 9 C 1.46904 * 110.99933 * 183.19086 * 8 7 6 10 10 H 1.08991 * 109.47301 * 55.00023 * 9 8 7 11 11 C 1.52998 * 109.46743 * 294.99579 * 9 8 7 12 12 C 1.50701 * 109.46937 * 175.00010 * 9 8 7 13 13 O 1.21279 * 120.00488 * 4.93848 * 12 9 8 14 14 N 1.34776 * 119.99866 * 184.93914 * 12 9 8 15 15 C 1.46497 * 120.00019 * 5.35566 * 14 12 9 16 16 C 1.46495 * 119.99903 * 185.34835 * 14 12 9 17 17 C 1.50705 * 109.46944 * 90.00558 * 16 14 12 18 18 H 1.07993 * 119.99896 * 359.97438 * 17 16 14 19 19 C 1.37874 * 120.00064 * 179.97438 * 17 16 14 20 20 N 1.31523 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47322 * 60.00198 * 21 19 17 23 23 H 1.48505 * 109.47272 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47023 * 300.00007 * 21 19 17 25 25 C 1.46954 * 110.88196 * 59.31912 * 8 7 6 26 26 C 1.46956 * 110.99938 * 303.80196 * 5 4 3 27 27 N 1.31205 * 108.77981 * 0.23223 * 4 3 2 28 28 N 1.34336 * 125.89314 * 179.97438 * 2 1 3 29 29 H 0.96998 * 126.76673 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46866 * 89.99881 * 1 2 3 31 31 H 1.09007 * 109.46548 * 209.99678 * 1 2 3 32 32 H 1.08996 * 109.47083 * 329.99517 * 1 2 3 33 33 H 1.08998 * 109.48887 * 63.22384 * 6 5 4 34 34 H 1.09001 * 109.50661 * 303.17027 * 6 5 4 35 35 H 1.08995 * 109.48871 * 181.63357 * 7 6 5 36 36 H 1.08990 * 109.50566 * 61.57347 * 7 6 5 37 37 H 1.08995 * 109.47434 * 310.77873 * 11 9 8 38 38 H 1.09001 * 109.46668 * 70.77944 * 11 9 8 39 39 H 1.09001 * 109.47180 * 190.77482 * 11 9 8 40 40 H 1.08994 * 109.47687 * 95.99631 * 15 14 12 41 41 H 1.09001 * 109.47458 * 216.00059 * 15 14 12 42 42 H 1.09005 * 109.47166 * 336.00211 * 15 14 12 43 43 H 1.09006 * 109.47422 * 210.00090 * 16 14 12 44 44 H 1.08996 * 109.47679 * 330.00216 * 16 14 12 45 45 H 0.96996 * 120.00044 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.48887 * 60.64561 * 25 8 7 47 47 H 1.09004 * 109.48985 * 180.71002 * 25 8 7 48 48 H 1.09002 * 109.49038 * 296.77596 * 26 5 4 49 49 H 1.09004 * 109.49339 * 56.82063 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2744 1.0604 0.0000 4 6 3.5584 0.6892 0.0006 5 7 4.6544 1.5538 0.0002 6 6 5.9176 0.8028 0.0017 7 6 7.0905 1.7828 0.0816 8 7 7.0319 2.7070 -1.0595 9 6 8.1853 3.6168 -1.0598 10 1 9.1068 3.0352 -1.0373 11 6 8.1223 4.5206 0.1731 12 6 8.1564 4.4640 -2.3058 13 8 7.2172 4.3879 -3.0693 14 7 9.1743 5.3064 -2.5717 15 6 10.3618 5.3141 -1.7138 16 6 9.0933 6.2142 -3.7186 17 6 8.4634 7.5136 -3.2872 18 1 8.1540 7.6493 -2.2615 19 6 8.2821 8.5290 -4.2021 20 7 8.6594 8.3639 -5.4512 21 14 7.5007 10.1392 -3.6676 22 1 8.3267 10.7604 -2.6013 23 1 7.4186 11.0596 -4.8302 24 1 6.1348 9.8777 -3.1466 25 6 5.7687 3.4580 -1.0609 26 6 4.5955 2.4784 -1.1405 27 7 3.6192 -0.6214 -0.0041 28 7 2.2946 -1.0883 0.0005 29 1 2.0055 -2.0142 0.0012 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 5.9941 0.2181 -0.9150 34 1 5.9427 0.1345 0.8624 35 1 8.0292 1.2295 0.0535 36 1 7.0294 2.3485 1.0112 37 1 7.1266 4.9567 0.2533 38 1 8.3344 3.9324 1.0659 39 1 8.8610 5.3165 0.0783 40 1 11.1329 4.6826 -2.1549 41 1 10.7364 6.3335 -1.6208 42 1 10.0998 4.9319 -0.7272 43 1 10.0956 6.4060 -4.1017 44 1 8.4865 5.7583 -4.5008 45 1 8.5315 9.0781 -6.0949 46 1 5.6923 4.0427 -0.1442 47 1 5.7438 4.1261 -1.9218 48 1 4.6567 1.9131 -2.0704 49 1 3.6566 3.0315 -1.1123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931624581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:52 Heat of formation + Delta-G solvation = 70.521554 kcal Electronic energy + Delta-G solvation = -29945.174037 eV Core-core repulsion = 25944.478282 eV Total energy + Delta-G solvation = -4000.695755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.21953 -41.45376 -39.81181 -37.09854 -36.53908 -34.77622 -33.47686 -33.46470 -32.03963 -31.65884 -29.53541 -28.80951 -27.70844 -27.09387 -25.65964 -24.79610 -23.76018 -22.57961 -21.72194 -20.63403 -19.91261 -18.99191 -18.65202 -17.95161 -17.53400 -17.19525 -16.92478 -16.55200 -16.17838 -16.05767 -15.88365 -15.39659 -15.37078 -15.13547 -14.74196 -14.56996 -14.13022 -14.03082 -13.73208 -13.69672 -13.51242 -13.38771 -13.24714 -13.10084 -12.92477 -12.77552 -12.75962 -12.58358 -12.29268 -12.23904 -12.13546 -12.01968 -11.80996 -11.66541 -11.58752 -11.08530 -10.77453 -10.62686 -10.28731 -9.58849 -9.36939 -9.22083 -8.20425 -6.35497 0.52418 1.37273 1.41668 1.48670 1.52654 1.78297 1.86908 2.25294 2.36385 2.42115 2.93849 3.08901 3.42096 3.58151 3.65863 3.78816 4.00374 4.06817 4.14218 4.15433 4.23655 4.32984 4.37530 4.40729 4.60993 4.67319 4.70183 4.72108 4.74082 4.75882 4.79110 4.90354 4.92225 4.97110 5.03781 5.06699 5.12960 5.14827 5.26752 5.29153 5.53311 5.59531 5.84014 5.90639 6.01543 6.08502 6.11124 6.23798 6.72841 6.84811 7.08538 7.30801 7.55044 8.86292 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002625 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.722980 B =10662.568656 C =11782.580722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.302 3.698 3 N -0.583 5.583 4 C 0.392 3.608 5 N -0.447 5.447 6 C 0.073 3.927 7 C 0.059 3.941 8 N -0.533 5.533 9 C 0.078 3.922 10 H 0.135 0.865 11 C -0.186 4.186 12 C 0.502 3.498 13 O -0.579 6.579 14 N -0.609 5.609 15 C 0.065 3.935 16 C 0.261 3.739 17 C -0.539 4.539 18 H 0.055 0.945 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.966 3.034 22 H -0.259 1.259 23 H -0.280 1.280 24 H -0.277 1.277 25 C 0.051 3.949 26 C 0.089 3.911 27 N -0.369 5.369 28 N -0.471 5.471 29 H 0.457 0.543 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.021 0.979 44 H -0.004 1.004 45 H 0.266 0.734 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.030 0.970 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -19.849 17.361 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.024 3.976 3 N -0.316 5.316 4 C 0.022 3.978 5 N -0.171 5.171 6 C -0.055 4.055 7 C -0.068 4.068 8 N -0.257 5.257 9 C -0.033 4.033 10 H 0.152 0.848 11 C -0.244 4.244 12 C 0.290 3.710 13 O -0.459 6.459 14 N -0.340 5.340 15 C -0.077 4.077 16 C 0.139 3.861 17 C -0.578 4.578 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.790 3.210 22 H -0.184 1.184 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.077 4.077 26 C -0.039 4.039 27 N -0.205 5.205 28 N -0.192 5.192 29 H 0.306 0.694 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.039 0.961 44 H 0.014 0.986 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.049 0.951 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.087 -19.798 16.775 27.494 hybrid contribution -0.611 0.583 -0.478 0.971 sum -9.698 -19.215 16.297 26.998 Atomic orbital electron populations 1.20679 0.79790 1.06750 1.06087 1.25184 0.98224 0.81495 0.92692 1.70247 1.00778 1.31561 1.28992 1.22384 0.90662 0.87819 0.96960 1.59186 1.00009 1.15808 1.42076 1.22182 0.85785 0.95103 1.02381 1.22335 0.98699 0.93981 0.91827 1.62049 1.01196 1.18981 1.43519 1.21603 0.96499 0.93550 0.91668 0.84793 1.22582 1.03238 1.00967 0.97605 1.21130 0.81821 0.80180 0.87867 1.90541 1.35628 1.68641 1.51111 1.48092 1.18688 1.37238 1.30025 1.22228 0.86784 1.03227 0.95435 1.18709 0.95759 0.87364 0.84258 1.21660 1.40648 0.99413 0.96054 0.92676 1.25865 0.95955 1.02650 0.94748 1.70057 1.48375 1.34798 1.03711 0.85492 0.78891 0.78489 0.78097 1.18375 1.20510 1.20276 1.22390 0.87861 0.95382 1.02115 1.21993 0.99497 0.93392 0.88969 1.78135 0.98865 1.10690 1.32845 1.47593 1.02716 1.10822 1.58097 0.69372 0.87406 0.86338 0.88227 0.93912 0.88174 0.86766 0.92236 0.93189 0.88077 0.89985 0.91508 0.91672 0.87460 0.96136 0.98556 0.92472 0.93457 0.89583 0.95121 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.30 5.37 8.23 138.24 1.14 6.51 16 3 N -0.58 -15.92 10.96 -189.11 -2.07 -17.99 16 4 C 0.39 11.39 7.39 260.91 1.93 13.32 16 5 N -0.45 -12.92 4.80 -707.12 -3.39 -16.32 16 6 C 0.07 1.78 4.98 86.31 0.43 2.20 16 7 C 0.06 1.28 5.26 86.31 0.45 1.73 16 8 N -0.53 -15.86 4.52 -874.89 -3.96 -19.82 16 9 C 0.08 2.25 1.94 44.17 0.09 2.33 16 10 H 0.13 2.98 7.72 -2.39 -0.02 2.96 16 11 C -0.19 -4.42 7.93 71.98 0.57 -3.85 16 12 C 0.50 21.05 6.77 87.66 0.59 21.64 16 13 O -0.58 -30.27 13.26 -3.03 -0.04 -30.31 16 14 N -0.61 -25.91 2.85 -851.14 -2.43 -28.34 16 15 C 0.06 1.91 9.71 127.77 1.24 3.15 16 16 C 0.26 14.28 5.23 85.64 0.45 14.73 16 17 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 18 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 19 C 0.01 0.39 5.46 84.65 0.46 0.85 16 20 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 21 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 C 0.05 1.71 4.73 86.31 0.41 2.12 16 26 C 0.09 2.88 5.54 86.31 0.48 3.36 16 27 N -0.37 -9.52 11.83 -59.03 -0.70 -10.22 16 28 N -0.47 -7.95 7.43 -50.72 -0.38 -8.33 16 29 H 0.46 3.65 8.96 -213.10 -1.91 1.74 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 -0.08 8.14 -2.38 -0.02 -0.10 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 2.16 8.01 -2.39 -0.02 2.14 16 35 H 0.11 1.84 8.12 -2.39 -0.02 1.82 16 36 H 0.06 1.18 6.85 -2.39 -0.02 1.17 16 37 H 0.05 1.40 5.92 -2.39 -0.01 1.39 16 38 H 0.10 1.68 7.16 -2.39 -0.02 1.66 16 39 H 0.08 1.95 5.40 -2.39 -0.01 1.93 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 42 H 0.11 2.32 4.12 -2.38 -0.01 2.31 16 43 H 0.02 1.15 8.07 -2.38 -0.02 1.13 16 44 H 0.00 -0.24 7.35 -2.39 -0.02 -0.25 16 45 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.05 1.53 6.24 -2.39 -0.01 1.51 16 47 H 0.09 3.69 5.22 -2.39 -0.01 3.68 16 48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 2.84 7.95 -2.38 -0.02 2.82 16 Total: -1.00 -85.35 383.05 -2.36 -87.71 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.93 Total: 15.65 kcal Atomic # 6 Polarization: 28.22 SS G_CDS: 9.22 Total: 37.45 kcal Atomic # 7 Polarization: -145.14 SS G_CDS: -12.64 Total: -157.78 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.04 Total: -30.31 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -85.35 -2.36 -87.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.229 kcal (2) G-P(sol) polarization free energy of solvation -85.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds