Wall clock time and date at job start Tue Mar 31 2020 19:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30886 * 125.89661 * 2 1 4 4 C 1.33653 * 109.77037 * 179.97438 * 3 2 1 5 5 N 1.39604 * 125.60952 * 179.97438 * 4 3 2 6 6 C 1.46955 * 110.99992 * 56.20063 * 5 4 3 7 7 C 1.53051 * 109.36519 * 183.18887 * 6 5 4 8 8 N 1.46955 * 109.36442 * 301.59825 * 7 6 5 9 9 C 1.46897 * 111.00071 * 183.18940 * 8 7 6 10 10 H 1.09002 * 109.46892 * 192.29150 * 9 8 7 11 11 C 1.52999 * 109.47027 * 312.28823 * 9 8 7 12 12 C 1.50701 * 109.47295 * 72.29107 * 9 8 7 13 13 O 1.21280 * 119.99936 * 343.68019 * 12 9 8 14 14 N 1.34778 * 119.99736 * 163.67662 * 12 9 8 15 15 C 1.46502 * 120.00212 * 359.97438 * 14 12 9 16 16 C 1.46501 * 119.99739 * 180.02562 * 14 12 9 17 17 C 1.50693 * 109.47452 * 89.99825 * 16 14 12 18 18 H 1.08001 * 120.00065 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00445 * 179.97438 * 17 16 14 20 20 N 1.31506 * 120.00431 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99538 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47399 * 89.99578 * 21 19 17 23 23 H 1.48503 * 109.46983 * 209.99427 * 21 19 17 24 24 H 1.48493 * 109.47237 * 329.99353 * 21 19 17 25 25 C 1.46959 * 110.88193 * 59.31714 * 8 7 6 26 26 C 1.46961 * 110.99967 * 179.97438 * 5 4 3 27 27 N 1.31199 * 108.77758 * 0.22786 * 4 3 2 28 28 N 1.34341 * 125.89336 * 179.97438 * 2 1 3 29 29 H 0.97004 * 126.75805 * 359.97438 * 28 2 1 30 30 H 1.09000 * 109.47213 * 89.99831 * 1 2 3 31 31 H 1.09001 * 109.47089 * 210.00153 * 1 2 3 32 32 H 1.09001 * 109.46952 * 329.99909 * 1 2 3 33 33 H 1.09001 * 109.49234 * 63.21786 * 6 5 4 34 34 H 1.09004 * 109.49077 * 303.15102 * 6 5 4 35 35 H 1.09005 * 109.49221 * 181.62667 * 7 6 5 36 36 H 1.09003 * 109.48901 * 61.56132 * 7 6 5 37 37 H 1.09002 * 109.46888 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.47670 * 300.00357 * 11 9 8 39 39 H 1.09002 * 109.47018 * 60.00403 * 11 9 8 40 40 H 1.09002 * 109.46550 * 90.00416 * 15 14 12 41 41 H 1.08998 * 109.46833 * 209.99891 * 15 14 12 42 42 H 1.08993 * 109.47393 * 330.00210 * 15 14 12 43 43 H 1.09005 * 109.46761 * 209.99993 * 16 14 12 44 44 H 1.09008 * 109.47162 * 329.99651 * 16 14 12 45 45 H 0.97007 * 120.00465 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.48855 * 60.64580 * 25 8 7 47 47 H 1.09000 * 109.48821 * 180.69002 * 25 8 7 48 48 H 1.09002 * 109.48430 * 56.84692 * 26 5 4 49 49 H 1.08997 * 109.50826 * 296.79206 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0603 0.0000 4 6 3.5584 0.6891 0.0006 5 7 4.6545 1.5536 0.0002 6 6 4.5951 2.4798 1.1396 7 6 5.7681 3.4596 1.0589 8 7 7.0312 2.7085 1.0598 9 6 8.1846 3.6182 1.0595 10 1 9.0918 3.0547 0.8413 11 6 7.9842 4.6954 -0.0084 12 6 8.3111 4.2696 2.4125 13 8 7.3783 4.2443 3.1873 14 7 9.4608 4.8801 2.7617 15 6 10.5877 4.9101 1.8260 16 6 9.5839 5.5129 4.0772 17 6 10.1099 4.5089 5.0703 18 1 10.3309 3.5004 4.7532 19 6 10.3101 4.8780 6.3836 20 7 10.7687 4.0017 7.2504 21 14 9.9287 6.6225 6.9320 22 1 8.5166 6.7015 7.3848 23 1 10.8292 6.9975 8.0517 24 1 10.1369 7.5553 5.7956 25 6 7.0907 1.7823 -0.0796 26 6 5.9177 0.8025 0.0017 27 7 3.6191 -0.6215 -0.0040 28 7 2.2946 -1.0883 0.0005 29 1 2.0054 -2.0142 0.0012 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 4.6557 1.9157 2.0704 34 1 3.6564 3.0332 1.1100 35 1 5.7425 4.1291 1.9187 36 1 5.6924 4.0427 0.1411 37 1 8.8403 5.3702 -0.0090 38 1 7.8927 4.2244 -0.9871 39 1 7.0771 5.2590 0.2097 40 1 10.5176 5.8006 1.2013 41 1 11.5234 4.9311 2.3848 42 1 10.5607 4.0211 1.1960 43 1 10.2730 6.3550 4.0123 44 1 8.6060 5.8678 4.4027 45 1 10.9092 4.2612 8.1744 46 1 7.0299 2.3463 -1.0103 47 1 8.0295 1.2293 -0.0501 48 1 5.9434 0.1328 -0.8579 49 1 5.9934 0.2194 0.9194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931624585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:57 Heat of formation + Delta-G solvation = 93.136579 kcal Electronic energy + Delta-G solvation = -29844.386857 eV Core-core repulsion = 25844.671763 eV Total energy + Delta-G solvation = -3999.715094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.35776 -40.09208 -38.54612 -35.96972 -34.83250 -32.82434 -32.64915 -32.36666 -31.02411 -30.54636 -28.39407 -28.05445 -26.44201 -25.90643 -23.96502 -23.75445 -22.08015 -21.42837 -20.83691 -19.49757 -18.42753 -18.10796 -16.91353 -16.76873 -16.40582 -16.05276 -15.79990 -15.05977 -14.90179 -14.72839 -14.50994 -14.37054 -14.00946 -13.88696 -13.65895 -13.33297 -13.30290 -13.20598 -12.64157 -12.37986 -12.20595 -12.16578 -12.10411 -11.93295 -11.77830 -11.65833 -11.40727 -11.12651 -11.03287 -10.89120 -10.73408 -10.67736 -10.48709 -10.18322 -10.10188 -9.89099 -9.48914 -8.90158 -8.57463 -8.55242 -8.08296 -7.63976 -6.04674 -4.03041 1.35419 2.31998 2.63777 3.20132 3.31485 3.34641 3.37785 3.39340 3.66492 4.12587 4.16147 4.39852 4.42803 4.70981 4.90065 4.90789 4.96210 5.07533 5.14350 5.15007 5.24570 5.29035 5.29521 5.34761 5.40941 5.43132 5.52978 5.64691 5.71784 5.76027 5.79927 5.86543 5.89709 5.98885 6.02124 6.11887 6.18873 6.24496 6.52296 6.70628 6.84052 6.91848 6.97972 7.11393 7.17696 7.39349 7.65200 7.94558 8.30329 8.51563 8.98614 9.06659 9.55671 11.08828 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.002520 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.913026 B =11110.276580 C =11855.513019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.541 5.541 4 C 0.411 3.589 5 N -0.442 5.442 6 C 0.071 3.929 7 C 0.051 3.949 8 N -0.517 5.517 9 C 0.065 3.935 10 H 0.102 0.898 11 C -0.180 4.180 12 C 0.517 3.483 13 O -0.525 6.525 14 N -0.598 5.598 15 C 0.082 3.918 16 C 0.217 3.783 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.266 1.266 25 C 0.056 3.944 26 C 0.067 3.933 27 N -0.348 5.348 28 N -0.483 5.483 29 H 0.439 0.561 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.377 -6.543 -20.385 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 N -0.274 5.274 4 C 0.041 3.959 5 N -0.166 5.166 6 C -0.056 4.056 7 C -0.076 4.076 8 N -0.242 5.242 9 C -0.047 4.047 10 H 0.120 0.880 11 C -0.239 4.239 12 C 0.303 3.697 13 O -0.401 6.401 14 N -0.331 5.331 15 C -0.062 4.062 16 C 0.097 3.903 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.072 4.072 26 C -0.061 4.061 27 N -0.183 5.183 28 N -0.202 5.202 29 H 0.285 0.715 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.196 -6.534 -19.746 25.758 hybrid contribution -0.256 0.106 0.246 0.371 sum -15.452 -6.428 -19.500 25.697 Atomic orbital electron populations 1.20406 0.83563 1.05117 1.04568 1.24303 0.96542 0.82501 0.95179 1.70239 1.00542 1.29349 1.27236 1.22247 0.90273 0.87403 0.95962 1.59218 0.99175 1.15317 1.42926 1.22288 0.99967 0.93698 0.89603 1.22467 0.86985 0.95384 1.02793 1.61998 1.01668 1.18762 1.41740 1.21659 0.95160 0.93848 0.94027 0.88025 1.22379 1.03505 0.99556 0.98492 1.20052 0.82974 0.78898 0.87777 1.90603 1.38579 1.58327 1.52617 1.47804 1.12296 1.55552 1.17418 1.21714 0.91115 1.00135 0.93199 1.19641 0.97447 0.93540 0.79719 1.21335 1.43355 0.98696 0.93074 0.90759 1.24865 0.94592 0.97260 0.96378 1.69899 1.45707 1.34370 1.03701 0.86850 0.78828 0.85263 0.78720 1.19931 1.21140 1.19101 1.22227 0.97970 0.94574 0.92443 1.22176 0.85993 0.95058 1.02834 1.78279 0.96487 1.11126 1.32419 1.47675 1.03976 1.09774 1.58804 0.71532 0.88945 0.89795 0.88236 0.92716 0.88809 0.86987 0.93730 0.91175 0.91779 0.91448 0.93663 0.90589 0.92182 0.95334 0.94606 0.92623 0.93611 0.89512 0.89470 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.01 0.38 0.06 16 2 C 0.29 2.74 8.23 -155.73 -1.28 1.46 16 3 N -0.54 -7.18 10.96 -11.13 -0.12 -7.30 16 4 C 0.41 5.86 7.39 -321.18 -2.37 3.49 16 5 N -0.44 -6.18 4.80 -174.85 -0.84 -7.02 16 6 C 0.07 1.04 5.53 -3.77 -0.02 1.02 16 7 C 0.05 0.77 4.43 -3.77 -0.02 0.75 16 8 N -0.52 -7.85 4.42 -227.88 -1.01 -8.86 16 9 C 0.06 0.97 1.93 -68.87 -0.13 0.83 16 10 H 0.10 1.37 6.27 -51.93 -0.33 1.04 16 11 C -0.18 -2.14 8.19 37.16 0.30 -1.83 16 12 C 0.52 10.48 6.85 -10.98 -0.08 10.40 16 13 O -0.53 -12.78 13.84 5.56 0.08 -12.70 16 14 N -0.60 -12.25 2.86 -182.95 -0.52 -12.77 16 15 C 0.08 1.24 9.36 59.85 0.56 1.80 16 16 C 0.22 5.33 4.23 -5.20 -0.02 5.31 16 17 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 18 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 21 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 25 C 0.06 0.68 5.40 -3.77 -0.02 0.66 16 26 C 0.07 0.86 4.98 -3.76 -0.02 0.84 16 27 N -0.35 -4.62 11.83 29.99 0.35 -4.27 16 28 N -0.48 -4.45 7.43 32.62 0.24 -4.20 16 29 H 0.44 2.28 8.96 -182.34 -1.63 0.64 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.32 7.95 -51.93 -0.41 0.90 16 35 H 0.11 1.96 5.88 -51.93 -0.31 1.65 16 36 H 0.04 0.61 6.41 -51.93 -0.33 0.27 16 37 H 0.07 0.77 6.48 -51.93 -0.34 0.43 16 38 H 0.06 0.64 7.02 -51.93 -0.36 0.28 16 39 H 0.07 0.85 6.39 -51.93 -0.33 0.52 16 40 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 41 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 42 H 0.06 0.75 6.02 -51.93 -0.31 0.44 16 43 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.04 0.94 6.85 -51.92 -0.36 0.58 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.05 0.51 7.02 -51.93 -0.36 0.15 16 47 H 0.09 0.94 8.02 -51.93 -0.42 0.52 16 48 H 0.09 1.03 8.00 -51.93 -0.42 0.61 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -38.24 381.78 -11.91 -50.14 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.79 Total: 0.22 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -3.16 Total: 11.18 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.12 Total: -71.72 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.24 -11.91 -50.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931624585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.280 kcal (2) G-P(sol) polarization free energy of solvation -38.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds